BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40990.1
Length=1125
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493878 jgi|Araly1|493878|fgenesh2_kg.7__3311__AT5G40990.1 1640 0.0
Ahg337558 jgi|Araly1|337558|fgenesh1_pg.C_scaffold_1004123 1153 0.0
Ahg337560 jgi|Araly1|337560|fgenesh1_pg.C_scaffold_1004125 989 0.0
Ahg478837 jgi|Araly1|478837|fgenesh2_kg.3__1538__AT3G14225.1 420 1e-116
> Ahg493878 jgi|Araly1|493878|fgenesh2_kg.7__3311__AT5G40990.1
Length=1107
Score = 1640 bits (888), Expect = 0.0
Identities = 1052/1128 (93%), Gaps = 24/1128 (2%)
Strand=Plus/Plus
Query 1 ATGGAAAACTCTCAATTAGTTTCGATCACTTTCTTAGCTTACACTATAATCATATCAATC 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 1 ATGGAAAACTCTCAATTAGTTTCGATCACTTTCTTAGCTTACACAATAATCATATCAGTC 60
Query 61 GGCTCCATCAACTGCATAGACAACAATAATCTTGTAACAAACCAATCCGCTCTGTTCGTG 120
|||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||
Sbjct 61 GGCTCCATCAACTGCATAGACAACAACAATCTGGTAACAAACCAATCCGCTTTGTTCGTG 120
Query 121 TTTGGAGATTCTGTGTTCGATGCTGGAAATAACAACTACATCGATACTCTCTCTAGTGTC 180
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 121 TTTGGAGATTCTGTGTTCGATGCTGGAAACAACAACTACATCGATACTTTCTCTAGTGTC 180
Query 181 CGGTCTAATTACTGGCCGTATGGTCAAACAACATTCAAATCCCCTACTGGAAGAGTCTCT 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CGGTCTAATTACTGGCCGTATGGTCAAACAACATTCAAATCCCCTACTGGAAGAGTCTCC 240
Query 241 GACGGACGTTTGATTCCTGATTTCATCGCGGAGTACGCATGGTTACCGTTGATCCCGCCA 300
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 241 GACGGACGTTTGATTCCTGATTTCATCGCGGAGTACGCATGGTTACCATTGATCCCACCA 300
Query 301 AATTTACAACCATTCAACGGTAACAGCCAATTTGCCTATGGGGTAAACTTTGCGTCAGGT 360
|||||||||||| || ||||||||||||||||| ||||||||||||| ||||| ||||||
Sbjct 301 AATTTACAACCACTCCACGGTAACAGCCAATTTACCTATGGGGTAAATTTTGCTTCAGGT 360
Query 361 GGCGCCGGAGCTTTAGTCGGAACCTTTTCTGGATTGGTGATAAATTTGAGAACACAATTA 420
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 361 GGCGCCGGAGCTTTGGTCGGAACCTTTTCCGGATTGGTGATAAATTTGAGAACACAATTA 420
Query 421 AACAACTTCAAAAAGGTTGAAGAAATGTTAAGGTCTAAGTTAGGAGATGCTGAGGGGAAG 480
||||||||||| ||||||||| ||||||| ||||||||||||||||||| ||||||||||
Sbjct 421 AACAACTTCAAGAAGGTTGAAAAAATGTTGAGGTCTAAGTTAGGAGATGTTGAGGGGAAG 480
Query 481 AGGGTTATCTCAAGAGCTGTTTATTTGTTTCATATTGGACTCAACGACTATCAATATCCA 540
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 481 AGGGTTATCTCAAGAGCTGTTTATTTGTTTCATATTGGACTCAACGATTATCAATATCCG 540
Query 541 TTCACTACAAATTCTTCC-TTATTTCAATCCATTTCCAACGAGAAATACGTAGATTATGT 599
||||||||||| |||||| || ||||||||||||||||||||||||||||| ||||||||
Sbjct 541 TTCACTACAAACTCTTCCATT-TTTCAATCCATTTCCAACGAGAAATACGTCGATTATGT 599
Query 600 TGTCGGTAACATGACAGACGTTTTCAAGGAAGTGTATAATCTTGGAGGAAGGAAGTTTGG 659
||| ||||||||||||||||||||||||| | | | ||| | | |||||
Sbjct 600 TGTTGGTAACATGACAGACGTTTTCAAGG--G---A-A-----GGA--A-G----TTTGG 641
Query 660 AATCTTGAACACGGGACCGTACGATTGTGCACCAGCCTCATTGGTTATAGACCAAACAAA 719
| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 642 ATTCTTGAACACAGGACCATACGATTGTGCACCAGCCTCATTGGTTATAGACCAAACAAA 701
Query 720 AATAAGATCTTGTTTCCAGCCGGTCACTGAA-CTGATCAATATGCACAACGAGAAGCTTC 778
||| |||||||||| |||||||||||| || ||||||||| |||||||| ||||||| |
Sbjct 702 GATAGGATCTTGTTTTCAGCCGGTCACT-AAGCTGATCAATCTGCACAACAAGAAGCTCC 760
Query 779 TGAATGGTTTGAGACGGCTAAATCATGAACTATCCGGATTCAAATACGCCCTTCACGACT 838
||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 761 TGAATGGTTTGAGGCGGCTAAATCATGAACTATCCGGATTCAAATACTCCCTCCACGACT 820
Query 839 ATCACACTTCCCTATCGGAAAGGATGAACGATCCTTCAAAATATGGGTTCAAGGAGGGGA 898
||||||||||||| |||||||| ||||| ||||||||||||| ||||||||||||||||
Sbjct 821 ATCACACTTCCCTCTCGGAAAGAATGAATAATCCTTCAAAATACGGGTTCAAGGAGGGGA 880
Query 899 AGAAAGCATGTTGCGGAAGCGGACCATTGAGAGGAATCAATACGTGTGGAGGCCGAATGG 958
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 881 AGAAGGCATGTTGTGGAAGCGGACCATTGAGAGGAATCAATACGTGTGGAGGCCGAATGG 940
Query 959 GACTGTCGCAAAGTTACGAGTTATGTGAAAACGTTACAGACTATTTGTTCTTTGATCCTT 1018
||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 941 GACTGTCACAAAATTACGAGTTATGTGAAAACGTTACAGACTATTTGTTCTATGATCCTT 1000
Query 1019 TTCATTTGACGGAAAAGGCTAATC-GACAGATCGCTGAGCTGATTTGGAGCGGACCTACC 1077
|||||||||||||||| ||||||| | ||||||||||||||||||||||||||||| |||
Sbjct 1001 TTCATTTGACGGAAAAAGCTAATCAG-CAGATCGCTGAGCTGATTTGGAGCGGACCGACC 1059
Query 1078 AACATTACTGGACCCTATAATCTCAAAGCGCTGTTTGAACTTAATTAA 1125
||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1060 AACATCACTGGACCCTATAATCTCAAAGCGCTGTTTGAACTTAACTAA 1107
> Ahg337558 jgi|Araly1|337558|fgenesh1_pg.C_scaffold_1004123
Length=1131
Score = 1153 bits (624), Expect = 0.0
Identities = 974/1142 (85%), Gaps = 28/1142 (2%)
Strand=Plus/Plus
Query 1 ATGGAAAACTCTCAATTAGTTTCGATCACT-TTCTTAGCTTACACTATAATCATATCAAT 59
||||||||||||| || | || |||| | ||||| |||||||| | |||| ||| ||
Sbjct 1 ATGGAAAACTCTCGATCAACGTCAATCA-TCTTCTTTGCTTACACAACAATCGTATTGAT 59
Query 60 CGGCTCCATCAACTGCATAG------ACAACAATAATCTTGTAACAAACCAATCCGCTCT 113
|| ||||||||||||| || ||||||| ||||| |||||||||||||||||| |
Sbjct 60 CGATTCCATCAACTGCAGAGACAACAACAACAACAATCTGGTAACAAACCAATCCGCTTT 119
Query 114 GTTCGTGTTTGGAGATTCTGTGTTCGATGCTGGAAATAACAACTACATCGATACTCT-CT 172
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 120 GTTCGTGTTTGGAGATTCTGTGTTCGATGCTGGAAACAACAACTACATCGATACTCTTCC 179
Query 173 CTAGTGTCCGGTCTAATTACTGGCCGTATGGTCAAACAACATTCAAATCCCCTACTGGAA 232
| ||| ||||||||||||||||||| || || ||||| || ||||||| |||||||||||
Sbjct 180 C-AGTTTCCGGTCTAATTACTGGCCATACGGCCAAACCACTTTCAAATTCCCTACTGGAA 238
Query 233 GAGTCTCTGACGGACGTTTGATTCCTGATTTCATCGCGGAGTACGCATGGTTACCGTTGA 292
||||||| ||||||||| ||||||||||| || |||||||||||||||||||||||||
Sbjct 239 GAGTCTCCGACGGACGTACAATTCCTGATTTTATTGCGGAGTACGCATGGTTACCGTTGA 298
Query 293 TCCCGCCAAATTTACAACCAT-TCAACGGT-AACAGCCAATTTGCCTATGGGGTAAACTT 350
|||| ||| || |||||||| | |||||| || | | | ||| ||||||| || | ||
Sbjct 299 TCCCACCATATCTACAACCAAGT-AACGGTCAAAATC-AGTTTACCTATGGAGTTAGTTT 356
Query 351 TGCGTCAGGTGGCGCCGGAGCTTTAGTCGGAACCTTTTCTGGATTGGTGATAAATTTGAG 410
||| || | || ||||||||||||| ||| |||||| | ||| |||||||| ||||||
Sbjct 357 TGCTTCCGCCGGTGCCGGAGCTTTAGCCGGCACCTTTCCCGGAATGGTGATAGATTTGAA 416
Query 411 AACACAATTAAACAACTTCAAAAAGGTTGAAGAAATGTTAAGGTCTAAGTTAGGAGATGC 470
|||||||||| ||||||| ||||||||||||||| |||| || | |||||||||||| ||
Sbjct 417 AACACAATTAGACAACTTTAAAAAGGTTGAAGAATTGTTGAGATTTAAGTTAGGAGAAGC 476
Query 471 TGAGGGGAAGAGGGTTATCT-CAAGAGCTGTTTATTTGTTTCATATTGGACTCAACGACT 529
| |||||||||||||| | ||| ||| |||||| |||||||||| ||| ||||||| |
Sbjct 477 ACAAGGGAAGAGGGTTAT-TGCAACAGCAGTTTATCTGTTTCATATCGGAGTCAACGATT 535
Query 530 ATCAATATCCATTCACTACAAATTCTTCCTTATTTC-AATCCATTTCCAACGAGA-A-AT 586
|||||||||||||| ||||||| |||||| | |||| |||||| | || ||||| | ||
Sbjct 536 ATCAATATCCATTCTCTACAAACTCTTCCGT-TTTCCAATCCAAT-CCT-CGAGAGATAT 592
Query 587 ACGTAGATTATGTTGTCGGTAACATGACAGACGTTTTCAAGGAAGTGTATA-ATCTTGGA 645
|||| |||| ||||||| |||||| ||||| ||| ||||||||||||||| | |||||
Sbjct 593 ACGTTGATTTTGTTGTCAGTAACACGACAGCCGTGATCAAGGAAGTGTATAGAA-TTGGA 651
Query 646 GGAAGGAAGTTTGGAATCTTGAACACGGGACCGTACGATTGTGCACCAGCCTCATTGGTT 705
||||||||||||||| ||||||||| |||| |||| ||||||||||||||||||||| ||
Sbjct 652 GGAAGGAAGTTTGGATTCTTGAACATGGGAGCGTATGATTGTGCACCAGCCTCATTGATT 711
Query 706 ATAGACCAAACAAAAATAAGATCTTGTTTCCAGCCGGTCACTGAACTGATCAATATGCAC 765
|||||||||||||||||| |||||||||| |||||||||| || ||||||| | |||||
Sbjct 712 ATAGACCAAACAAAAATAGGATCTTGTTTTAAGCCGGTCACCGAGCTGATCAGTCTGCAC 771
Query 766 AACGAGAAGCTTCTGAATGGTTTGAGACGGCTAAATCATGAACTATCCGGATTCAAATAC 825
||||| ||||||| | |||||||||| |||||| | | ||||||||| ||||||||||||
Sbjct 772 AACGATAAGCTTCGGGATGGTTTGAGGCGGCTAGAGCGTGAACTATCGGGATTCAAATAC 831
Query 826 GCCCTTCACGACTATCACACTTCCCTATCGGAAAGGATGAACGATCCTTCAAAATATGGG 885
|| ||||| ||||||||||||||| |||| ||| | |||||| ||||||| ||||| |||
Sbjct 832 GCTCTTCATGACTATCACACTTCCTTATCCGAACGAATGAACAATCCTTCGAAATACGGG 891
Query 886 TTCAAGGAGGGGAAGAAAGCATGTTGCGGAAGCGGACCATTGAGAGGAATCAATACGTGT 945
|| |||||||||||||| |||||||| |||| |||||||||||| ||||||||||| |||
Sbjct 892 TTTAAGGAGGGGAAGAAGGCATGTTGTGGAACCGGACCATTGAGGGGAATCAATACATGT 951
Query 946 GGAGGCCGAATGGGACTGTCGCAAAGTTACGAGTTATGTGAAAACGTTACAGACTATTTG 1005
||||||||||||||| | || ||||||||||||||||| |||||||||||||| || |||
Sbjct 952 GGAGGCCGAATGGGAGTATCTCAAAGTTACGAGTTATGCGAAAACGTTACAGATTACTTG 1011
Query 1006 TTCTTTGATCCTTTTCATTTGACGGA-AAAGGCTA-ATCGACAGATCGCTGAGCTGATTT 1063
||||||||||||||||||||||| || |||| | | ||| ||| || || ||||||||||
Sbjct 1012 TTCTTTGATCCTTTTCATTTGACTGAGAAAG-C-ACATCAACAAATTGCAGAGCTGATTT 1069
Query 1064 GGAGCGGACCTACCAACATTACTGGACCCTATAATCTCAAAGCGCTGTTTGAACTTAATT 1123
|||||||| | |||||| | || | ||| ||||||||||||||||||||||||||| |||
Sbjct 1070 GGAGCGGATCGACCAACGTCACCGAACCTTATAATCTCAAAGCGCTGTTTGAACTTCATT 1129
Query 1124 AA 1125
||
Sbjct 1130 AA 1131
> Ahg337560 jgi|Araly1|337560|fgenesh1_pg.C_scaffold_1004125
Length=1131
Score = 989 bits (535), Expect = 0.0
Identities = 945/1140 (83%), Gaps = 40/1140 (4%)
Strand=Plus/Plus
Query 1 ATGGAAAACTCTCAATTAGTTTCGATCACT-TTCTTAGCT-TACACTA-TAATCATATCA 57
|||| || ||||| |||||||||||||| | ||||| | | || || | ||||| ||||
Sbjct 1 ATGGGAAGCTCTCGATTAGTTTCGATCA-TCTTCTTCG-TCTATAC-AGTAATCTTATCG 57
Query 58 ATCGGCTCCATCAACTGCATAGACAACAATAATCTTGTAACAAACCAATCCGC-TCTGTT 116
|||||||| |||||||||| | |||| || |||||||||||||||||| | || | ||||
Sbjct 58 ATCGGCTCAATCAACTGCAAAAACAAGAACAATCTTGTAACAAACCAAGCTGCGT-TGTT 116
Query 117 CGTGTTTGGAGATTCTGTGTTCGATGCTGGAAATAACAACTACATCGATACTC-TCTCTA 175
|||||| ||||||||| |||||||||| ||||| ||||||||||||||||| | |||| |
Sbjct 117 CGTGTTCGGAGATTCTCTGTTCGATGCCGGAAACAACAACTACATCGATAC-CGTCTCAA 175
Query 176 GTGTCCGGTCTAAT-TACTGGCCGTATGGTCAAACAACATTCAAA-TCCCCTACTGGAAG 233
|| ||||||||||| || |||||||| |||| ||| || |||||| | ||| || |||||
Sbjct 176 GTTTCCGGTCTAATATA-TGGCCGTACGGTCGAACCACTTTCAAAGTTCCC-ACCGGAAG 233
Query 234 AGTCTCTGACGGACGTTTGATTCCTGATTTCATCGCGGAGTACGCATGGTTACCGTTGAT 293
| |||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 234 ACTCTCAGACGGACGATTGATTCCTGATTTCATCGCGGAGAACGCATGGTTACCGTTGAT 293
Query 294 CCCGCCAAATTTACAACCATTCAACGGTAACAGCCAATTTGCCTATGGGGTAAACTTTGC 353
|||||||||| |||||||| ||||||||||| |||||| ||||||| |||| |||||
Sbjct 294 CCCGCCAAATCTACAACCAAGCAACGGTAACAATCAATTTACCTATGGAGTAAGTTTTGC 353
Query 354 GTCAGGTGGCGCCGGAGCTTTAGTCGGAACCTTTTCTGGATTGGTGATAAATTTGAGAAC 413
|| | |||||||||||||||||||| || |||| ||||| ||| ||||||||| ||||
Sbjct 354 TTCTGCTGGCGCCGGAGCTTTAGTCGAAAGCTTTCCTGGAATGGCAATAAATTTGGGAAC 413
Query 414 ACAATTAAACAACTTCAAAAAGGTTGAAGAA-ATGTTAAGGTCT-AAGTTAGGAGATGCT 471
||| ||||||||||||| | |||||| || | ||| || ||| || |||||||||||
Sbjct 414 ACAGCTAAACAACTTCAAGGATGTTGAA-AAGAGGTTGAGATCTGAA-TTAGGAGATGCA 471
Query 472 GAGGGGAAGAGGGTTATCTCAAGAGCTGTTTATTTGTTTCATATTGGACTCAACGACTAT 531
|| || |||||| ||||||||||||||||| |||||||||| ||| | |||||||||
Sbjct 472 GATACCAAAAGGGTTTTCTCAAGAGCTGTTTATCTGTTTCATATCGGAGTTAACGACTAT 531
Query 532 CAATATCCATTCACTACAAATTCTTCCTTATTTC-AATCCATTTCCAACGAGAAATACGT 590
||||| ||| || |||| || || |||| |||||| |||||| ||||||| |||
Sbjct 532 TTTTATCCTTTCTCTGCAAACTCCTCAAC-TTTCCAATCCAATTCCAAAGAGAAATTCGT 590
Query 591 AGATTATGTTGTCGGTAACATGACAGACGTTTTCAAGGA-AGTGTATAATCTTGGAGGAA 649
|||| |||| ||||||||| |||| ||| ||||| | | | ||||| | |||||||
Sbjct 591 CGATTTTGTTATCGGTAACACGACATCCGTGATCAAG-ACACTTTATAAAATGGGAGGAA 649
Query 650 GGAAGTTTGGAATCTTGAACACGGGACCGTACGATTGTGCACCA-GCCTCATTGGTTATA 708
|||| |||||| | |||||| |||||||||||| ||||||||| | |||||| | | |
Sbjct 650 GGAAATTTGGATTTTTGAACGTGGGACCGTACGAATGTGCACCAAGT-TCATTGATAAGA 708
Query 709 GACCAAACAAAAATAAGATCTTGTTTCCAGCCGGTCACTGAACTGATCA-ATATGCACAA 767
|||| |||||| ||| ||||||||||| | || |||||||| || || | ||||||||||
Sbjct 709 GACCGAACAAAGATAGGATCTTGTTTCAAACCTGTCACTGAGCTTAT-AGATATGCACAA 767
Query 768 CGAGAAGCTTCTGAATGGT-TTGAGACGGCTA-AATCATGAACTATCCGGATTCAAATAC 825
| ||||| ||| | ||| | || || |||||| || | |||| |||||||||| | ||||
Sbjct 768 CAAGAAGTTTCCGGATG-TCTTAAGGCGGCTACAA-CGTGAATTATCCGGATTTAGATAC 825
Query 826 GCCCTTCACGACTATCACACTTCCCTATCGGAAAGGATGAACGATCCTTCAAAATATGGG 885
|| ||||||||||||||| |||| || || ||||| || || |||||||||||||||||
Sbjct 826 GCTCTTCACGACTATCACTCTTCACTTTCCGAAAGAATCAATAATCCTTCAAAATATGGG 885
Query 886 TTCAAGGAGGGGAAGAAAGCATGTTGCGGAAGCGGACCATTGAGAGGAATCAATACGTGT 945
||||| || |||||||| |||||||| |||||||||||| ||||||||||||||||||||
Sbjct 886 TTCAAAGAAGGGAAGAAGGCATGTTGTGGAAGCGGACCACTGAGAGGAATCAATACGTGT 945
Query 946 GGAGGCCGAAT-GGGACTGTCGCAAAGTTACGAGTTATGTGAAAACGTTACAGACTATTT 1004
||| |||||| ||| | |||||| |||||||| |||| ||||||||||| || |||||
Sbjct 946 GGAAACCGAATAGGGCCA-TCGCAAGGTTACGAGCTATGCGAAAACGTTACCGATTATTT 1004
Query 1005 GTTCTTTGAT-CCTTTTCATTTGACGGAAAAGGCTAATCGACAGATCGCTGAGCTGATTT 1063
|||||||||| ||| | |||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 1005 GTTCTTTGATTCCTCT-CATTTGACGGAAAAGGCTCATCGACAGATCGCAGAGCTGATTT 1063
Query 1064 GGAGCGGACCTACCAACAT-T-ACTGGACCCTATAATCTCAAAGCGCTG-TTTGAACTTA 1120
|| ||||| | ||| | || | |||||||| |||||||||||||| || |||||| |||
Sbjct 1064 GGGGCGGATC-ACCCA-ATGTCACTGGACCTTATAATCTCAAAGC-CTTATTTGAATTTA 1120
> Ahg478837 jgi|Araly1|478837|fgenesh2_kg.3__1538__AT3G14225.1
Length=1134
Score = 420 bits (227), Expect = 1e-116
Identities = 796/1061 (75%), Gaps = 78/1061 (7%)
Strand=Plus/Plus
Query 89 ATCTTGTAACAAACCAATCCG-CTCTGTTCGTGTTTGGAGATTCTG-TGTTCGATGCTGG 146
||||| |||| |||||| ||| || ||||||| ||||||||||| | |||| || || ||
Sbjct 89 ATCTTATAACGAACCAAGCCGCCT-TGTTCGTTTTTGGAGATTC-GCTGTTTGAAGCCGG 146
Query 147 AAATAACAACTACATCGA-TACTCTCTCTAGTGTCCGGTCTAATTACTGGCCGTATGGTC 205
||| || || ||| |||| | || |||| ||| |||| || |||| |||||| ||||| |
Sbjct 147 AAACAATAATTACTTCGACT-CTGTCTCAAGTTTCCGATCGAATTTCTGGCCATATGG-C 204
Query 206 -AAACAACATTCAAATCCCCTACTGGAAGAGTCTCTGACGGACGTTTGATTCCT-GATTT 263
||||||| ||||| | || || ||| | || || || ||||| | | | | |||||
Sbjct 205 AAAACAACGTTCAAGTTTCCAACGGGACGGGTTTCGGATGGACGAAT-AATGATAGATTT 263
Query 264 CATCGCGGAGTACGCATGGTTACCGTTGATCCCGCCAAATTTACAACCAT--TCAACGGT 321
|| || || |||||||||||||||||||||||||||||| ||||||| | | || ||
Sbjct 264 TATTGCTGATTACGCATGGTTACCGTTGATCCCGCCAAATCTACAACC-TGGT-TACAGT 321
Query 322 AACAGCCAATTTGCCTATGGGGTAAACTTTGCG-T-C-AGGTGGCGCCGGAGCTTTAGTC 378
||||| ||||| ||||||| | || ||| || | | | | |||||||| ||| | |
Sbjct 322 AACAGTCAATTAACCTATGGACTTAA-TTT-CGCTACTA-CAGCCGCCGGAGTTTTCGCC 378
Query 379 GGAACCTTTTCTGGATTGGTGA-TAA-ATTT-----GA-----GAACACAATTAAACAAC 426
||||| ||| | |||| ||| | ||| ||| || ||||||| |||||||||
Sbjct 379 GGAACGTTTCCGGGATCGGTAACTAATCTTTCGAAAGACTTGGGAACACAGTTAAACAAC 438
Query 427 TTCAAAAAGGTTGAAG-AAATGTTAAGGTCTAAGTTAGGAGATGCTGAGG-G-GAAGAGG 483
||||| || | || || ||| ||| || ||||| ||||||||||| |||| | |||||
Sbjct 439 TTCAAGAACG-TGGAGAAAACGTTGAGATCTAATTTAGGAGATGCAGAGGCGAGAAGA-- 495
Query 484 GTTATCTC-AAGAGCTGTTTAT-TTGTTTCATATTGGACTC-AACGACTATCAATATCCA 540
|| ||||| || |||||||||| || ||||| || ||| | || ||||||||||| |||
Sbjct 496 GTAATCTCGAA-AGCTGTTTATCTT-TTTCACATCGGA-GCAAATGACTATCAATACCCA 552
Query 541 TTCACTACAAATTCTTCCTTA-TTTCAAT-CCATTTCCAACGAGAA-ATACGTAGA-TTA 596
||| | | ||| | | | | ||| | | || | |||| || || || || || ||
Sbjct 553 TTCTTTGCCAATACCT-C-AACTTTTAGTAACACTACCAAAGA-AAGATTGGTCGAGTT- 608
Query 597 TGT--TGTCGGTAACATGA-CAGACGTTTTCAAGGAAGTGTAT-AATCTTGGAGGAAGGA 652
|| | || |||||| | || ||| || ||||| ||||| ||| | |||| |||||
Sbjct 609 CGTCAT-TC-GTAACACAACCA-CCGTCATCGAGGAATTGTATAAAT-TAGGAGCAAGGA 664
Query 653 AGTTTGGAATCTTGAACACGGGACCGTACGATTGTGCACC-AGCCTCATTGGTTATAGAC 711
| |||||| |||||| | ||| || | | ||| |||| || | ||| | | ||||||
Sbjct 665 AATTTGGATTCTTGAGCTTGGGTCCATTTGGCTGTACACCAAG-CGCATCGATAATAGAC 723
Query 712 CAAACAAAAATAAGATCTTGTTTCCAGCCGGTCA-CTGAACTGATCAATATGCACAA-CG 769
| |||| ||| ||||||||||| ||||||| | | || ||||||||| | || || |
Sbjct 724 CGGGCAAAGATAGGATCTTGTTTCGAGCCGGT-AGCAGAGCTGATCAATCTCCATAACCA 782
Query 770 AGAAGCTTCTGAATGGT-TTGAGACGGCTAAATC-ATGAACTATCCGGATTCAAATACGC 827
|||| ||| || || ||||| || ||| | | | |||||||||||||||||||
Sbjct 783 AGAA--TTCCCAAAAGTCTTGAGGCGTCTAGAGCGCCG-GTTATCCGGATTCAAATACGC 839
Query 828 CCTTCACGACTATCACACTTCCCTATCGGAAAGGATGAACGATCCTTCAAAATATGGGTT 887
|||||||||| ||||||||| |||| ||||||| ||| | ||||| ||| || ||
Sbjct 840 TCTTCACGACTTTCACACTTCTTTATCCCAAAGGATCAACAACCCTTCTCGATACGGTTT 899
Query 888 CAAGGAGGGGAAGAAAGCATGTTGCGGAAGCGGACCATTGAGAGGAATCAATACGTGTGG 947
|||||| ||||||| ||||||||||| || || || ||||| ||||||||||| |||||
Sbjct 900 CAAGGAAGGGAAGATGGCATGTTGCGGGAGTGGGCCGTTGAGGGGAATCAATACATGTGG 959
Query 948 AGGCCG-AATGGGACTGTCGCAAAGTTACGAGTTATGTGAAAACG-TTACAGACTATTTG 1005
| ||| ||| |||| |||||| |||||||| |||| ||||||| | | || || |
Sbjct 960 ATTCCGAAAT-GGACCATCGCAAGGTTACGAGCTATGCGAAAACGCTGA-TGATTACGTC 1017
Query 1006 TTCTTTGATCCTTTTCATTTGACGGAAAAGGCTAATCGACAGATCGCTGAGCTGATTTGG 1065
||||||||||| | ||||||| ||||||||||| ||| ||||||||||||||||||||||
Sbjct 1018 TTCTTTGATCCCTCTCATTTGTCGGAAAAGGCTCATCAACAGATCGCTGAGCTGATTTGG 1077
Query 1066 AGCGGACCTACCAACAT-T-ACTGGACCCTATAATCTCAAA 1104
|||||||| || | || | |||| ||| || ||||| |||
Sbjct 1078 AGCGGACCG-CCTA-ATGTCACTGCACCTTACAATCTTAAA 1116
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41935208700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5