BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41000.1
Length=2276
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493877 jgi|Araly1|493877|fgenesh2_kg.7__3310__AT5G41000.1 3306 0.0
Ahg937017 jgi|Araly1|937017|scaffold_501208.1 558 5e-158
Ahg925320 jgi|Araly1|925320|scaffold_200881.1 375 6e-103
Ahg897162 jgi|Araly1|897162|Al_scaffold_0005_1128 91.6 2e-17
> Ahg493877 jgi|Araly1|493877|fgenesh2_kg.7__3310__AT5G41000.1
Length=2100
Score = 3306 bits (1790), Expect = 0.0
Identities = 1999/2102 (95%), Gaps = 5/2102 (0%)
Strand=Plus/Plus
Query 79 GAAATCTGCAGGAAATTCTCAAtttttt-tAAAAGAAGTAGCTTTTTGGAGTTATGGAGA 137
||||||||| || ||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 1 GAAATCTGCCGGGAATTCTCAATTTTTTGGAAAAGAAGTAGCTTTTTGTTGTTATGGAGA 60
Query 138 CGGAGATTCCTAGGTCAACGGAGATATCAGAGACATTGTTGTTACCAGAAACGAATCTAG 197
| |||||||| ||||||||||||||||||||||||||||||||||| | || ||||| |
Sbjct 61 CAGAGATTCCAAGGTCAACGGAGATATCAGAGACATTGTTGTTACCTGCGACAAATCTCG 120
Query 198 ATCACGGTGAATATGTACCCGAGTGGAAGGAACAGATCACGATTCGAGGCTTGATCTCTA 257
||| || |||| ||||||||||||||||||| ||||||||||| |||||||| |||||||
Sbjct 121 ATCCCGATGAAGATGTACCCGAGTGGAAGGACCAGATCACGATCCGAGGCTTAATCTCTA 180
Query 258 GCGCCTTGTTAGGGATTTTGTTCTGTATCATTACCCATAAGCTCAATCTAACAATCGGAA 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCGCCTTGTTAGGGATTTTGTTCTGTATCATTACCCATAAGCTCAATCTAACAATCGGAA 240
Query 318 TCATTCCTTCGCTTAATGTAGCTGCTGGTCTTCTCGGCTTCTTCTTCATCAAGTCGTGGA 377
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCATTCCTTCGCTAAACGTAGCTGCTGGTCTTCTCGGCTTCTTCTTCATCAAGTCGTGGA 300
Query 378 CTGGGTTCTTGTCTAAATTAGGGTTTTTATCTAAACCCTTTACTAAGCAAGAGAACACTG 437
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 301 CTGGGTTCTTGTCTAAATTAGGGTTTTCATCTAAACCCTTTACTAAGCAAGAGAACACTG 360
Query 438 TTATTCAGACTTGCGTTGTCTCCTGCTACGGCCTTGCTTATAGCGGAGGATTTGGTTCGT 497
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 361 TTATTCAGACTTGTGTTGTCTCCTGTTACGGCCTTGCTTATAGCGGAGGATTTGGTTCAT 420
Query 498 ATTTGATAGCTATGGATGAAAGGACATATAAGCTCATTGGTTCTGATTATCCTGGAAACA 557
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ATTTGATAGCTATGGATGATAGGACATATAAGCTCATTGGTTCTGATTATCCTGGAAACA 480
Query 558 ATCCTGAAGATGTTATAAATCCTGGATTGTGGTGGATGACTGGCTTTTTATTTGTAGTTA 617
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 481 ATCCTGAAGATGTTATAAATCCTGGATTGTGGTGGATGACTGGGTTTTTATTTGTAGTTA 540
Query 618 GCTTCCTCGGTCTCTTCTGTCTCGTTCCACTTCGCAAGGTGATGATTTTGGATTACAAGC 677
||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||
Sbjct 541 GCTTCCTCGGTCTCTTCAGTCTCGTTCCACTTCGTAAGGTGATGATTTTGGACTACAAGC 600
Query 678 TTACGTATCCCAGTGGAACCGCTACAGCAATGTTGATTAACAGTTTCCACAACAATACTG 737
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 601 TTACATATCCCAGTGGAACCGCTACAGCGATGTTGATTAACAGTTTCCACAACAACACTG 660
Query 738 GAGCTGAGCTTGCAGGAAAACAAGTCAAATGTCTTGGGAAATACCTGAGCCTTAGCTTAG 797
||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 661 GAGCTGAGCTTGCAGGAAACCAAGTTAAATGTCTTGGGAAATACCTGAGCCTTAGCTTAT 720
Query 798 TTTGGAGTTGCTTCAAGTGGTTCTTTAGTGGTATTGGAGGTGCATGTGGGTTTGATCACT 857
||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||
Sbjct 721 TTTGGAGTTGCTTCAAGTGGTTCTTCAGTGGTATTGGAGATGCATGTGGCTTTGATCACT 780
Query 858 TTCCCACACTTGGTTTGACTCTATTCAAGAACACGTTTTACTTTGATTTCAGTCCTACTT 917
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 781 TTCCCACACTTGGTTTGACGCTGTTCAAGAACACGTTTTACTTTGATTTCAGTCCTACTT 840
Query 918 TTATTGGATGTGGCATGATATGTCCCCATTTGGTGAACTGTTCGGTTCTTCTTGGTGCTA 977
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 841 TTATTGGATGTGGTATGATATGTCCCCATTTGGTGAACTGTTCGGTTCTTCTCGGTGCTA 900
Query 978 TCATCTCTTGGGGTTTTCTCTGGCCATTTATATCACAGCATGCTGGGGACTGGTATCCAG 1037
|||| ||||||||||| |||||||||| |||||||||||||||||||| ||||||||||
Sbjct 901 TCATTTCTTGGGGTTTCCTCTGGCCATCCATATCACAGCATGCTGGGGATTGGTATCCAG 960
Query 1038 CTGACCTTAAAGCCAACGATTTCAAAGGTCTCTATGGATATAAGGTATTTATCGCCATTT 1097
|||||||| | ||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 961 CTGACCTTGAGGCCAATGATTTCAAAGGTCTCTATGGATATAAGGTCTTTATCGCCATTG 1020
Query 1098 CTATCATCCTTGGTGACGGTCTCTACAACCTCATTAAGATCATTGTTGTCACTGTGAAGG 1157
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 1021 CTATCATCCTTGGTGACGGTCTTTACAACCTCATTAAGATCATTATTGTCACTGTGAAGG 1080
Query 1158 AAATCTGCAACAAAAGCTCCAGACAAC-ACAACCTACCTGTCTTTACCGACATTTTAGAT 1216
||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||
Sbjct 1081 AAATCTGCAACAAAAGCTCCAAACAACAAC-ACCTACCTGTCTTTACCGACATTTTAGAT 1139
Query 1217 AAAAGTAAGACCTCAGTATTAATGCGGGAGAAGAAGAAAAGAGAT-ATCATATTTCTCAA 1275
||||| |||||||||| |||||||||||||||||||||||||||| | ||||||||||||
Sbjct 1140 AAAAGCAAGACCTCAGAATTAATGCGGGAGAAGAAGAAAAGAGATGA-CATATTTCTCAA 1198
Query 1276 GGACCGTATACCCCTCGAGTTTGCGGTTTCTGGTTATGTGGGTCTTGCAGCTATTTCAAC 1335
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1199 GGACCGTATACCCCTCGAGTTTGCGGTTTCTGGTTATGTGGGTCTTGCAGCCATTTCAAC 1258
Query 1336 CGCTATAATCCCGTTGATATTCCCACCATTGAAATGGTACTTTGTCCTCTGTTCATACTT 1395
||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1259 TGCTATAATCCCATTGATATTCCCACCATTGAAATGGTACTTTGTCCTCTGTACATACTT 1318
Query 1396 AGTTGCCCCGGGTCTTGCTTTTTGCAATTCTTATGGAGCCGGGCTCACAGATATGAGCAT 1455
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1319 AGTTGCCCCGGGTCTTGCTTTTTGCAATTCTTATGGAGCCGGGCTCACGGATATGAGCAT 1378
Query 1456 GCCTTCAACCTACGGAAAGACTGGTCTTTTCATCGTTGCTTCAATTGTAGGAAATAATGG 1515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1379 GCCTTCAACCTACGGAAAGACTGGTCTTTTCATCGTTGCTTCAATTGTAGGAAATAACGG 1438
Query 1516 TGGAGTCATTGCCGGTTTAGCAGCATGTGGCATTATGATGTCAATCGTCTCAACTGCAGC 1575
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1439 TGGAGTCATTGCCGGTTTAGCAGCCTGTGGCATTATGATGTCAATCGTCTCAACTGCAGC 1498
Query 1576 GGATCTCATGCAGGATTTTAAAACAGGTTACCTCACACTATCATCTGCAAAATCCATGTT 1635
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 GGATCTCATGCAGGACTTTAAAACAGGTTACCTCACACTATCATCTGCAAAATCCATGTT 1558
Query 1636 TGTAACTCAGCTTTTGGGTACAGCAATGGGTTGCATAATCGCTCCTCTCACGTTCTGGCT 1695
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1559 TGTAACTCAGCTTTTGGGTACAGCAATGGGTTGCATAATCGCCCCTCTCACGTTCTGGCT 1618
Query 1696 GTTTTGGACTGCTTTTGATATTGGAGATCCTGATGGTCTATACAAAGCACCTTACGCGGT 1755
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1619 GTTTTGGACTGCTTTTGACATTGGAGATCCTGATGGTCTATACAAAGCACCTTACGCAGT 1678
Query 1756 CATCTACCGCGAAATGGCTATTCTCGGGGTCGAAGGCTTTGCCAAACTGCCCAAACACTG 1815
|||||||||||||||||||| |||||| |||| |||||| | ||||||||||| |||||
Sbjct 1679 TATCTACCGCGAAATGGCTATCCTCGGGATCGAGGGCTTTACAAAACTGCCCAAGCACTG 1738
Query 1816 TTTGGCACTTTGTTGTGGATTCTTCATCGCTGCTCTGATTGTAAATCTAATTAGAGACAT 1875
|||||| || ||||| ||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 1739 TTTGGCTCTATGTTGCGGATTCTTCATCGCTTCTCTGATTGTAAATCTAATTAGAGAAAT 1798
Query 1876 GACACCACCAAAGATCTCTAAGTTGATACCACTTCCAATGGCAATGGCTGGTCCATTCTA 1935
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 1799 CACACCACCAAAGATCTCTAAGTTAATACCACTTCCAATGGCTATGGCTGGTCCATTTTA 1858
Query 1936 CATAGGAGCTTACTTCGCCATCGACATGTTCGTAGGAACCGTGATAATGCTCGTATGGGA 1995
||||||||| |||||| |||||||||||||| ||||||||||||| ||| ||||||||||
Sbjct 1859 CATAGGAGCATACTTCACCATCGACATGTTCATAGGAACCGTGATTATGTTCGTATGGGA 1918
Query 1996 ACGGATGAATAAGAAAGACGCAGATGATTACTCGGGTGCAGTAGCTTCAGGTCTGATCTG 2055
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1919 ACGGATGAATAAGAAAGACGCAGATGATTACTCGGGTGCAGTAGCTTCAGGACTGATCTG 1978
Query 2056 CGGAGATGGAATTTGGACCATCCCATCCGCAATTCTTTCTATATTAAGAATCAATCCACC 2115
||| |||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 1979 CGGCGATGGAATCTGGACCATCCCATCCGCAGTTCTTTCAATATTAAGAATCAATCCACC 2038
Query 2116 CATTTGTATGTACTTTAGACCATCCTAGACATTGTTATCATGTTAAAAATTTGTTGCATT 2175
||| |||||||||||| |||||||||||||||||||||||| |||||| |||||||||||
Sbjct 2039 CATCTGTATGTACTTTGGACCATCCTAGACATTGTTATCATATTAAAAGTTTGTTGCATT 2098
Query 2176 AT 2177
||
Sbjct 2099 AT 2100
> Ahg937017 jgi|Araly1|937017|scaffold_501208.1
Length=1334
Score = 558 bits (302), Expect = 5e-158
Identities = 340/359 (95%), Gaps = 0/359 (0%)
Strand=Plus/Plus
Query 1505 GGAAATAATGGTGGAGTCATTGCCGGTTTAGCAGCATGTGGCATTATGATGTCAATCGTC 1564
||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 952 GGATATAATGGTGGAGTCATTGCCGGTTTAGCAGCCTGTGGCATTATGATGTCAATCGTC 1011
Query 1565 TCAACTGCAGCGGATCTCATGCAGGATTTTAAAACAGGTTACCTCACACTATCATCTGCA 1624
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 TCAACTGTAGCGGATCTCATGCAGGATTTTAAAACAGGTTACCTCACACTATCATCTGCA 1071
Query 1625 AAATCCATGTTTGTAACTCAGCTTTTGGGTACAGCAATGGGTTGCATAATCGCTCCTCTC 1684
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 1072 AAATCCATGTTTGTAACTCAACTTTTGGGTACAGCAATGGGTTGCATAATCGCTCCTGTC 1131
Query 1685 ACGTTCTGGCTGTTTTGGACTGCTTTTGATATTGGAGATCCTGATGGTCTATACAAAGCA 1744
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 ACATTCTGGCTGTTTTGGACTGCTTTTGATATTGGAGATCCTGATGGTCTATACAAAGCA 1191
Query 1745 CCTTACGCGGTCATCTACCGCGAAATGGCTATTCTCGGGGTCGAAGGCTTTGCCAAACTG 1804
|||||||| || |||||||| |||||||||||||||| | ||||||||||||| |||||
Sbjct 1192 CCTTACGCAGTTATCTACCGTGAAATGGCTATTCTCGAGATCGAAGGCTTTGCGAAACTT 1251
Query 1805 CCCAAACACTGTTTGGCACTTTGTTGTGGATTCTTCATCGCTGCTCTGATTGTAAATCT 1863
||||| ||||||||| | |||||||| |||||||||| ||||||||||||||||||||
Sbjct 1252 CCCAAGCACTGTTTGACGCTTTGTTGCAGATTCTTCATAGCTGCTCTGATTGTAAATCT 1310
Score = 383 bits (207), Expect = 3e-105
Identities = 221/228 (97%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 792 GCTTAGTTTGGAGTTGCTTCAAGTGGTTCTTTAGTGGTATTGGAGGTGCATGTGGGTTTG 851
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 272 GCTTAGTTTGGAGTTGCTTCAAGTGGTTCTTCAGTGGTATTGGAGATGCATGTGGGTTTG 331
Query 852 ATCACTTTCCCACACTTGGTTTGACTCTATTCAAGAACACGTTTTACTTTGATTTCAGTC 911
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 332 ATCACTTTCCCACACTTGGTTTGACGCTATTCAAGAACACGTTTTACTTTGATTTCAGTC 391
Query 912 CTACTTTTATTGGATGTGGCATGATATGTCCCCATTTGGTGAACTGTTCGGTTCTTCTTG 971
||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
Sbjct 392 CTACTTTTATTGGATGTGGTATGATATGTCCCCATTTGGTGAACTGTTCGGTCCTTCTCG 451
Query 972 GTGCTATCATCTCTTGGGGTTTTCTCTGGCCATTTATATCACAGCATG 1019
|||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 452 GTGCTATCATTTCTTGGGGTTTTCTCTGGCCATTTATATCACAGCATG 499
Score = 331 bits (179), Expect = 1e-89
Identities = 248/278 (89%), Gaps = 18/278 (6%)
Strand=Plus/Plus
Query 488 TTTGGTTCGTATTTGATAGCTATGGATGAAAGGACATATAAGCTCATTGGTTCTGATTAT 547
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 TTTGGTTGGTATTTGATAGCTATGGATGATAGGACATATAAGCTCATTGGTTCTGATTAT 60
Query 548 CCTGGAAACAATCCTGAAGATGTTATAAATCCTGGATTGTGGTGGATGACTGGCTTTTTA 607
||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||
Sbjct 61 CCTGGAAACAATCCTGAAGATGTTATATACCCTGGATTGTGGTGGATGACTGGGTTTTTA 120
Query 608 TTTGTAGTTAGCTTCCTCGGTCTCTTCTGTCTCGTTCCACTTCGCAAGG-TG-AT--GA- 662
|||||||||||||| |||||||||||| ||||||||||||||||||||| || || ||
Sbjct 121 TTTGTAGTTAGCTTTCTCGGTCTCTTCAGTCTCGTTCCACTTCGCAAGGGTGTATCTGAG 180
Query 663 -T--T--TT--GGATTACAAGCTTACGTATCCCAGTGGAACCGCTACAGCAATGTTGATT 715
| | || ||| ||||||||||| || | || |||||||||||| |||||||||
Sbjct 181 GTGATGATTTTGGACTACAAGCTTAC--AT---A-TGCAACCGCTACAGCGATGTTGATT 234
Query 716 AACAGTTTCCACAACAATACTGGAGCTGAGCTTGCAGG 753
|||||||||||| |||| ||||||||||||||||||||
Sbjct 235 AACAGTTTCCACTACAACACTGGAGCTGAGCTTGCAGG 272
Score = 255 bits (138), Expect = 8e-67
Identities = 153/160 (96%), Gaps = 2/160 (1%)
Strand=Plus/Plus
Query 1213 AGATAAAAGTAAGACCTCAGTATTAATGCGGGAGAAGAAGAAAAGAGAT-ATCATATTTC 1271
|||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||
Sbjct 783 AGATAAAAGTAAGACCTCAGAATTAATGCGGGAGAAGAAGAAAAGAGATGA-CATATTTC 841
Query 1272 TCAAGGACCGTATACCCCTCGAGTTTGCGGTTTCTGGTTATGTGGGTCTTGCAGCTATTT 1331
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 842 TCAAGGACCGTATACCCCTCGAGTTTGCGGTTTCTGGTTATGTGGGTCTTGCAGCCATTT 901
Query 1332 CAACCGCTATAATCCCGTTGATATTCCCACCATTGAAATG 1371
|||| ||||||||||| ||| |||||||||||||||||||
Sbjct 902 CAACTGCTATAATCCCATTGTTATTCCCACCATTGAAATG 941
Score = 202 bits (109), Expect = 1e-50
Identities = 123/130 (95%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 1085 TTTATCGCCATTTCTATCATCCTTGGTGACGGTCTCTACAACCTCATTAAGATCATTGTT 1144
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 502 TTTATCGCCATTGCTATCATCCTTGGTGACGGTCTCTACAACCTCATTAAGATCATTATT 561
Query 1145 GTCACTGTGAAGGAAATCTGCAACAAAAGCTCCAGACAACACAACCTACCTGTCTTTACC 1204
|||||||||||||||||||||||||||||||||| ||||||| |||||| ||| ||||||
Sbjct 562 GTCACTGTGAAGGAAATCTGCAACAAAAGCTCCAAACAACACCACCTACTTGTGTTTACC 621
Query 1205 GACATTTTAG 1214
|||| |||||
Sbjct 622 GACAATTTAG 631
> Ahg925320 jgi|Araly1|925320|scaffold_200881.1
Length=374
Score = 375 bits (203), Expect = 6e-103
Identities = 228/240 (95%), Gaps = 2/240 (1%)
Strand=Plus/Plus
Query 245 GGCTTGATCTCTAGCGCCTTGTTAGGGATTTTGTTCTGTATCATTACCCATAAGCTCAAT 304
||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 49 GGCTTCATCTTTAGCGCCTTGTTGGGGATTTTGTTCTGTATCATTACCCATAAGCTCAAT 108
Query 305 CTAACAATCGGAATCATTCCTTCGCTTAATGTAGCTGCTGGTCTTCTCGGCTTCTTCTTC 364
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 109 CTAACAATCGGAATCATTCCTTCGCTTAATGTAGCTGCTGATCTTCTCGGCTTCTTCTTC 168
Query 365 ATCAAGTCGTGGACTGGGTTCTTGTCTAAATTAGGGTTTTTATCTAAACCCTTTACTAAG 424
|||| |||||||||||||||||||||||||||||||||| | |||||| ||||||||||
Sbjct 169 GTCAAATCGTGGACTGGGTTCTTGTCTAAATTAGGGTTTTCACCTAAACGCTTTACTAAG 228
Query 425 CAAGAGAACACTGTTATTCAGACTTGCGTTGTCTCCTGCTACGGCCT-TGCTTATAGCGG 483
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 229 CAAGAGAACACTGTTATTCAGACTTGCGTTGTCTCCTGCTACGGT-TGTGCTTATAGCGG 287
> Ahg897162 jgi|Araly1|897162|Al_scaffold_0005_1128
Length=348
Score = 91.6 bits (49), Expect = 2e-17
Identities = 60/65 (92%), Gaps = 2/65 (3%)
Strand=Plus/Minus
Query 216 CCGAGTGGAAGGAACAGATCACGATTC-GAGGCTTGATCTCTAGCGCCTTGTTAGGGATT 274
|||||||||| || |||||||||| || ||||||| ||||||||||||||||||||||||
Sbjct 64 CCGAGTGGAAAGACCAGATCACGA-TCTGAGGCTTAATCTCTAGCGCCTTGTTAGGGATT 6
Query 275 TTGTT 279
|||||
Sbjct 5 TTGTT 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85703051250
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5