BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G41010.1

Length=187
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg891563 jgi|Araly1|891563|Al_scaffold_0007_3549                    246    3e-65


> Ahg891563 jgi|Araly1|891563|Al_scaffold_0007_3549
Length=159

 Score =  246 bits (133),  Expect = 3e-65
 Identities = 151/159 (95%), Gaps = 3/159 (2%)
 Strand=Plus/Plus

Query  1    ATGGATCCAG--C-GCCCGAACCCGTTACTTACGTCTGCGGAGATTGTGGTCAAGAGAAC  57
            ||||| ||||  | |||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct  1    ATGGAACCAGCACAGCCCGAACCCGTTACTTACGTCTGTGGAGATTGTGGACAAGAGAAC  60

Query  58   ACTTTGAAGTCTGGGGATGTGATCCAATGCAGAGAGTGTGGGTACCGTATTCTCTACAAG  117
            ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  61   ACTTTGAAGCCTGGGGATGTGATCCAATGCAGAGAGTGTGGCTACCGTATTCTCTACAAG  120

Query  118  AAGCGTACCCGTAGAGTTGTTCAATACGAAGCTCGCTGA  156
            |||||||||||||||||||||||||||||||||||||||
Sbjct  121  AAGCGTACCCGTAGAGTTGTTCAATACGAAGCTCGCTGA  159



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 6262874804


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5