BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41020.1
Length=1915
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947629 jgi|Araly1|947629|scaffold_703858.1 1472 0.0
> Ahg947629 jgi|Araly1|947629|scaffold_703858.1
Length=1755
Score = 1472 bits (797), Expect = 0.0
Identities = 947/1016 (93%), Gaps = 24/1016 (2%)
Strand=Plus/Plus
Query 911 gaag-aaaagtctgataaaagtgatgaagaCT-TGACCACCCCATCTACA-T-CAAG--- 963
|||| || |||||| | | |||||| |||| | ||||||||||||| | | | |||
Sbjct 730 GAAGCAAGAGTCTGTTCAGAGTGATAAAGA-TGTGACCACCCCATC-A-AGTAAAAGCAC 786
Query 964 TAAAAGGGTGAAGTTTTCTGACC-AAGTGGAGTTTTTTCCTAGtgatgatgatgaaggaa 1022
||||||||||| ||||||| || ||||||| |||||||||| | ||| ||||||| ||
Sbjct 787 AAAAAGGGTGAAATTTTCTG-CCGAAGTGGAATTTTTTCCTA--G-TGACGATGAAGAAA 842
Query 1023 cggaagatgatgatgaagaagaagTTAAGGTGGTGAGGGGTAAGCGGTTTACAAAAGAAG 1082
| ||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 843 C---AGAAGATGATGAAGAAGAAGTTAAGGTGGTTAGGGGTAAGCGGTATACAAAAGAAG 899
Query 1083 AAGATGAGATGGTAAAGAATGCTGTATTAGAATACATTGATAACCATGCTTTAGGAGATG 1142
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 900 AAGATGAGTTGGTAAAGAATGCTGTATTAGAATACATTGATAACCATGCTTTAGGAGAGG 959
Query 1143 AGGGGATAAAGATGGTTATGGAATGCAAGGCATACCCACAACTTAAAGGCTGTTGGAAAG 1202
|||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||
Sbjct 960 AGGGGATAAAGATGGTTATGGATTGCAAGTCACACCCACAACTTAAAGGCTGTTGGAAAG 1019
Query 1203 AAATTACATCTGCTTTACCTTGGAGGACTTATAATAGTGTGTATCATCGTGCACATACTA 1262
||||| |||||||||||||||||||| | |||||||||||||| |||||||||||||||
Sbjct 1020 AAATTGCATCTGCTTTACCTTGGAGGGCAAATAATAGTGTGTATAATCGTGCACATACTA 1079
Query 1263 TATTTGAAGCAGGATCTC-AGGGGATATGGACGAAAGAGGATATTGAACTCGTTATGGAG 1321
|||||||||||||||| | ||||||| ||| |||||||||||||||||||||||||||||
Sbjct 1080 TATTTGAAGCAGGATC-CAAGGGGATGTGGGCGAAAGAGGATATTGAACTCGTTATGGAG 1138
Query 1322 TTTCAAAAGACACACGGGAATGATTGGAAAACACTTGCAGATGCAATGGGTAAGCACAGG 1381
|||||||||| ||||||||||||||||| |||||||||||||||||||||||| || |||
Sbjct 1139 TTTCAAAAGAAACACGGGAATGATTGGAGAACACTTGCAGATGCAATGGGTAAACATAGG 1198
Query 1382 AAGCATGTGAAAGACGCTTGGAGGAGAGGAAGATTGGCAG-GTAAGAAGAAAGGACATTG 1440
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1199 AAGCATGTGAAAGACGCTTGGAGGAGAGGAAGATTGGCAGAG-AAGAAGAAAGGACATTG 1257
Query 1441 GATGAGGGAGGAGTATCAAAACCTCTTTGACCTTGTCAACAAAGACCTTAGAATGAAAGC 1500
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1258 GATGAGGGAGGAGTATCAAAAACTCTTTGACCTTGTGAACAAAGACCTTAGAATGAAAGC 1317
Query 1501 ATTCAAAGAGAAACACTCAAAACATGGTATGCTCAAAGATAACATCCCTTGGATGGCTAT 1560
|||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1318 ATTCCAAGAGAAGCACTCTAAACATGGTATGCTCAAAGATAACATCCCTTGGATGGCGAT 1377
Query 1561 AAGCGACGTACTTGAAACACGGGACCACGTGACTTGCTGCCAG-AAATGGTATGAGCAGT 1619
|||||||||||||| ||||||||||||||| |||||||| ||| ||||||||||||||||
Sbjct 1378 AAGCGACGTACTTGGAACACGGGACCACGTCACTTGCTG-CAGTAAATGGTATGAGCAGT 1436
Query 1620 TGATATCACCAATGGTAGCAAAGGGAATGTGGGCTAACGTTGATGACTATAGGCTCTTGG 1679
|||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1437 TGATGTCACCAATGGTAGCAAAGGGAATGTGGGCTAACGTAGATGACTATAGACTCTTGG 1496
Query 1680 AAGAGCTTTTGAAACTGGATGCTGCTTGTATCGACGATGTGGATTGGGATAATCTTTTGG 1739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 AAGAGCTTTTGAAACTGGATGCTGCTTGTATCGACGATGTGGATTGGGATAATCTTTTGG 1556
Query 1740 AGAATCGAGATGGAGAAGCTTGTAGAAAACGGTGGAACCAGATGATCATTCATATCGGCG 1799
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1557 AAAATCGAGATGGAGAAGCTTGTAGAAAACGGTGGAACCAGATGATCATTCATATCGGTG 1616
Query 1800 TACCGAAATCGAAAACATTTGCAGAACAAGTTGAGATTTTGTCTGACAGGTATTGCCCTG 1859
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1617 TACCGAAATCCAAAACATTTGCAGAACAAGTTGAGATTTTGTCTGAAAGGTATTGCCCTG 1676
Query 1860 ACATAGCTGAGGACAGAGAGGATTTTGACAACAGACCCTATGATCCTGAAGATTAA 1915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1677 ACATAGCTGAGGACAGAGAGGATTTTGACAACAGACCCTATGATCCTGAAGATTAA 1732
Score = 196 bits (106), Expect = 4e-49
Identities = 247/307 (80%), Gaps = 41/307 (13%)
Strand=Plus/Plus
Query 503 AAGGAGAAAAGTAAGGAGACAAAGGTTGATTCTGAAGCTCATGATGGTGTg---aag-ag 558
||| |||||| |||||||||||||||||||||||||||| | ||||||||| ||| ||
Sbjct 278 AAGAAGAAAATTAAGGAGACAAAGGTTGATTCTGAAGCTGAGGATGGTGTGAAAAAGAAG 337
Query 559 --gaagaagaagaagagcaagaaagaaTCTGGTG-GTGATGTGATAGAAAATACTGAAAG 615
|||||||||||||||||||||||||||||| | |||||||||||| |||| ||||||
Sbjct 338 AAGAAGAAGAAGAAGAGCAAGAAAGAATCTGG-GAGTGATGTGATAGGGAATAGTGAAAG 396
Query 616 CTCCAAAGT-----A--------TC-TG-ATAA-GA--A-----A-AAGGGAAA---AA- 647
|||| |||| | || || ||| || | | ||| |||| ||
Sbjct 397 CTCCGAAGTTTGTGAGAAACCACTCGTGCATATTGATGATGCTGATAAGAGAAAGGGAAA 456
Query 648 GA-AA-GCGGGATGATACTGATTTGGGAGCTGAAGAAAACATAGACAAGGAGGTGAAGAG 705
|| || |||||||||||||||||||| |||||||||||||| |||||||||||| |||||
Sbjct 457 GAGAAAGCGGGATGATACTGATTTGGTAGCTGAAGAAAACACAGACAAGGAGGTTAAGAG 516
Query 706 GAAGAA---CAACAAGAAGAAACCAAGTGTGGATTCAGATGTTGAAGATATCAATTTGGA 762
|||||| ||| |||||||||| ||||||||||||||| |||||||||| ||| ||| |
Sbjct 517 GAAGAAGAGCAAGAAGAAGAAACAAAGTGTGGATTCAGAGGTTGAAGATAACAACTTGAA 576
Query 763 CTCTACA 769
|||||||
Sbjct 577 CTCTACA 583
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71952472805
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5