BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G41030.1 Length=732 Score E Sequences producing significant alignments: (Bits) Value Ahg493876 jgi|Araly1|493876|fgenesh2_kg.7__3309__AT5G41030.1 726 0.0 > Ahg493876 jgi|Araly1|493876|fgenesh2_kg.7__3309__AT5G41030.1 Length=708 Score = 726 bits (393), Expect = 0.0 Identities = 642/751 (85%), Gaps = 62/751 (8%) Strand=Plus/Plus Query 1 ATGGTCATGGAGCCCAAGAAGAA-CCAAAATCTACCAAGTTTCTTAAACCCATCACGACA 59 ||||||||||| ||||||||||| || || |||||||||||||||||||||||||| ||| Sbjct 1 ATGGTCATGGATCCCAAGAAGAATCC-AACTCTACCAAGTTTCTTAAACCCATCACCACA 59 Query 60 GAATCAGGACAACGACAAGAAGAGGAAACAAACAGAGGTTAAAGGTTTCGACATTGTGGT 119 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 60 AAATCTGGACAACGACAAGAAGAGGAAACAAACAGAGGTTAAAGGTTTCGACATTGTGGT 119 Query 120 CGGCgaaaagaggaagaagaaggagaatgaagaggaagaccaagaaattcagattcttta 179 | | | | | | || || ||||||||||| | || |||||| ||||| | Sbjct 120 ---C------A-G--G--G-A-GA-AA-GAAGAGGAAGAAC-AG--ATTCAGCTTCTTGA 158 Query 180 tgagaaggagaagaagaaACCAAACAAAGATCGTCACCTTAAAGTTGAAGGAAGAGGTCG 239 |||| | |||||||||||||||||| |||||| |||| |||||| |||||||||||||| Sbjct 159 TGAG-A--AGAAGAAGAAACCAAACAGAGATCGACACCGTAAAGTCGAAGGAAGAGGTCG 215 Query 240 TAGAGTTAGGTTACCTCCACTCTGTGCAGCAAGGATTTATCAATTGACTAAAGAATTAGG 299 |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 216 AAGAGTTAGGTTACCTCCACTTTGTGCAGCGAGGATTTATCAATTGACTAAAGAATTAGG 275 Query 300 TCACAAATCAGATGGTGAGACTCTTGAATGGTTGCTTCAACATGCTGAGCCATCGATACT 359 ||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||| | Sbjct 276 TCACAAATCAGATGGTGAGACTCTTGAATGGTTACTTCAACAAGCTGAGCCATCTATAAT 335 Query 360 CTCTGCTACTGTAAATGGTATCAAACCCACTG-AGTC--------TG-TT--GTTTCTCA 407 ||||||||||| |||||| |||||||||| || | | || || |||||||| Sbjct 336 CTCTGCTACTGGAAATGGAATCAAACCCATTGGAACCACCACCACTGATTCTGTTTCTCA 395 Query 408 ACCTCCTCTCACGGCTGATTTGATGATTTGTCATAGCGTTGAAGAAGCTTCAAGGACTCA 467 |||| |||||||||| ||||||||| || | |||| | |||||| ||||||||||||||| Sbjct 396 ACCTTCTCTCACGGCGGATTTGATGGTTAGGCATAACTTTGAAGGAGCTTCAAGGACTCA 455 Query 468 AATGGAGGCAAATGGGTTGTGGAGAA-ATGAAACAGGACAGACCATTGGAGGGTTTGATC 526 ||||| |||||||| | || | || || | | ||| ||||||||||||| Sbjct 456 AATGGCGGCAAATG--------A-AACA-GAG-CA--A-A--CCACTGGAGGGTTTGATT 499 Query 527 TGAATTACGGAATTGGGTTTGATTTCAATGGTGTTCCAGAGATTGGTTTTGGAGATAATC 586 ||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||| Sbjct 500 TGAATTACGGAATTGGGTTTGGTTTCAATGGTGTTTCAGAGATTGGTTTTGGAAATAATC 559 Query 587 AAACGCCTGGACTTGAATTAAGGCTGTCTCAAGTTGGGGTTTTGAATCCACAGGTTTTTC 646 |||||||||||||||||||| || |||||||||||| |||||||||||||||||||| || Sbjct 560 AAACGCCTGGACTTGAATTAGGGTTGTCTCAAGTTGCGGTTTTGAATCCACAGGTTTATC 619 Query 647 AACAAATGGGTAAAGAACAGT-TCAGGGTTCTTCATCATCATTCA--C--ATGAAGATCA 701 ||||||||||| ||||||||| | |||||||||||||||||| || | |||||||||| Sbjct 620 AACAAATGGGTCAAGAACAGTCT-AGGGTTCTTCATCATCAT-CATTCTTATGAAGATCA 677 Query 702 GCAGCAGAGTGCAGAGGAAAATGGTTCATAA 732 ||| |||||||||||| |||||||||| ||| Sbjct 678 GCAACAGAGTGCAGAGAAAAATGGTTCTTAA 708 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26952902319 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5