BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41030.1
Length=732
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493876 jgi|Araly1|493876|fgenesh2_kg.7__3309__AT5G41030.1 726 0.0
> Ahg493876 jgi|Araly1|493876|fgenesh2_kg.7__3309__AT5G41030.1
Length=708
Score = 726 bits (393), Expect = 0.0
Identities = 642/751 (85%), Gaps = 62/751 (8%)
Strand=Plus/Plus
Query 1 ATGGTCATGGAGCCCAAGAAGAA-CCAAAATCTACCAAGTTTCTTAAACCCATCACGACA 59
||||||||||| ||||||||||| || || |||||||||||||||||||||||||| |||
Sbjct 1 ATGGTCATGGATCCCAAGAAGAATCC-AACTCTACCAAGTTTCTTAAACCCATCACCACA 59
Query 60 GAATCAGGACAACGACAAGAAGAGGAAACAAACAGAGGTTAAAGGTTTCGACATTGTGGT 119
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 AAATCTGGACAACGACAAGAAGAGGAAACAAACAGAGGTTAAAGGTTTCGACATTGTGGT 119
Query 120 CGGCgaaaagaggaagaagaaggagaatgaagaggaagaccaagaaattcagattcttta 179
| | | | | | || || ||||||||||| | || |||||| ||||| |
Sbjct 120 ---C------A-G--G--G-A-GA-AA-GAAGAGGAAGAAC-AG--ATTCAGCTTCTTGA 158
Query 180 tgagaaggagaagaagaaACCAAACAAAGATCGTCACCTTAAAGTTGAAGGAAGAGGTCG 239
|||| | |||||||||||||||||| |||||| |||| |||||| ||||||||||||||
Sbjct 159 TGAG-A--AGAAGAAGAAACCAAACAGAGATCGACACCGTAAAGTCGAAGGAAGAGGTCG 215
Query 240 TAGAGTTAGGTTACCTCCACTCTGTGCAGCAAGGATTTATCAATTGACTAAAGAATTAGG 299
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 216 AAGAGTTAGGTTACCTCCACTTTGTGCAGCGAGGATTTATCAATTGACTAAAGAATTAGG 275
Query 300 TCACAAATCAGATGGTGAGACTCTTGAATGGTTGCTTCAACATGCTGAGCCATCGATACT 359
||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||| |
Sbjct 276 TCACAAATCAGATGGTGAGACTCTTGAATGGTTACTTCAACAAGCTGAGCCATCTATAAT 335
Query 360 CTCTGCTACTGTAAATGGTATCAAACCCACTG-AGTC--------TG-TT--GTTTCTCA 407
||||||||||| |||||| |||||||||| || | | || || ||||||||
Sbjct 336 CTCTGCTACTGGAAATGGAATCAAACCCATTGGAACCACCACCACTGATTCTGTTTCTCA 395
Query 408 ACCTCCTCTCACGGCTGATTTGATGATTTGTCATAGCGTTGAAGAAGCTTCAAGGACTCA 467
|||| |||||||||| ||||||||| || | |||| | |||||| |||||||||||||||
Sbjct 396 ACCTTCTCTCACGGCGGATTTGATGGTTAGGCATAACTTTGAAGGAGCTTCAAGGACTCA 455
Query 468 AATGGAGGCAAATGGGTTGTGGAGAA-ATGAAACAGGACAGACCATTGGAGGGTTTGATC 526
||||| |||||||| | || | || || | | ||| |||||||||||||
Sbjct 456 AATGGCGGCAAATG--------A-AACA-GAG-CA--A-A--CCACTGGAGGGTTTGATT 499
Query 527 TGAATTACGGAATTGGGTTTGATTTCAATGGTGTTCCAGAGATTGGTTTTGGAGATAATC 586
||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||
Sbjct 500 TGAATTACGGAATTGGGTTTGGTTTCAATGGTGTTTCAGAGATTGGTTTTGGAAATAATC 559
Query 587 AAACGCCTGGACTTGAATTAAGGCTGTCTCAAGTTGGGGTTTTGAATCCACAGGTTTTTC 646
|||||||||||||||||||| || |||||||||||| |||||||||||||||||||| ||
Sbjct 560 AAACGCCTGGACTTGAATTAGGGTTGTCTCAAGTTGCGGTTTTGAATCCACAGGTTTATC 619
Query 647 AACAAATGGGTAAAGAACAGT-TCAGGGTTCTTCATCATCATTCA--C--ATGAAGATCA 701
||||||||||| ||||||||| | |||||||||||||||||| || | ||||||||||
Sbjct 620 AACAAATGGGTCAAGAACAGTCT-AGGGTTCTTCATCATCAT-CATTCTTATGAAGATCA 677
Query 702 GCAGCAGAGTGCAGAGGAAAATGGTTCATAA 732
||| |||||||||||| |||||||||| |||
Sbjct 678 GCAACAGAGTGCAGAGAAAAATGGTTCTTAA 708
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26952902319
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5