BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41040.1
Length=1667
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493874 jgi|Araly1|493874|fgenesh2_kg.7__3307__AT5G41040.2 2194 0.0
> Ahg493874 jgi|Araly1|493874|fgenesh2_kg.7__3307__AT5G41040.2
Length=1570
Score = 2194 bits (1188), Expect = 0.0
Identities = 1372/1456 (94%), Gaps = 31/1456 (2%)
Strand=Plus/Plus
Query 77 GGTTGCTGAGAACAATAAAAAC-AAGGACGTAACACTCTCTGCATCAATGGacaacaaca 135
||||||||||||||| || ||| ||| | || |||||||||||||||||||
Sbjct 145 GGTTGCTGAGAACAACAACAACAAAGAAGGT-ACACTCTCTGCATCAATGG--------- 194
Query 136 acaacaacaTCAAAGGAACTAACATTCATCTTGAGGTTCATCAAAAGGAACCAGCTTTGG 195
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 195 ACAACAACATGAAAGGAACTAACTTTCATCTTGAGGTTCATCAAAAGGAACCAGCTTTGG 254
Query 196 TCAAACCTGAATCCGAGACACGAAAGGGCCTTTACTTCTTGTCGAATCTTGACCAGAACA 255
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 255 TCAAACCTGAATCCGAGACACGAAAGGGTCTTTACTTCTTGTCGAATCTTGACCAGAACA 314
Query 256 TCGCCGTGATTGTTCGTACAATCTACTGTTTCAAATCCGAGGAGAGAGGGAACGAGGAAG 315
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 315 TCGCCGTGATTGTTCGTACAATCTACTGTTTCAAATCTGAGGAGAGAGGGAACGAGGAAG 374
Query 316 CAGTCCAAGTGATCAAGAAAGCTCTGAGTCAAGTTCTTGTTCATTACTATCCTCTCGCTG 375
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 375 CAGTCCAAGTGATCAAGAAAGCTCTGAGTCAAGTTCTTGTTCATTACTACCCTCTTGCTG 434
Query 376 GACGCCTCACCATCAGTCCTGAAGGTAAACTCACAGTTGACTGTACCGAAGAAGGAGTTG 435
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 435 GACGCCTCACCATCAGTCCTGAAGGTAAACTCACAGTTGACTGTACTGAAGAAGGAGTTG 494
Query 436 TGTTTGTGGAAGCAGAAGCAAACTGTAAAATGGATGAGATTGGTGACATTACCAAACCCG 495
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 495 TATTTGTGGAAGCGGAAGCAAACTGTAAAATGGATGAGATTGGTGACATTACCAAACCCG 554
Query 496 ATCCTGAAACTCTAGGGAAGCTTGTGTACGATGTCGTAGACGCCAAGAACATTCTTGAGA 555
|||| |||||||||||||| |||||||||||||| |||||||||||||| ||||||||||
Sbjct 555 ATCCCGAAACTCTAGGGAAACTTGTGTACGATGTTGTAGACGCCAAGAATATTCTTGAGA 614
Query 556 TCCCTCCTGTTACCGCTCAGGTGACTAAATTCAAATGTGGAGGGTTTGTTCTCGGACTCT 615
| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 615 TTCCTCCTGTCACTGCTCAGGTGACTAAATTCAAATGTGGAGGGTTTGTTCTCGGACTCT 674
Query 616 GTATGAATCACTGTATGTTCGATGGAATTGGAGCTATGGAGTTTGTTAACTCATGGGGTC 675
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 675 GTATGAATCACTGTATGTTTGATGGAATTGGAGCTATGGAGTTTGTTAACTCATGGGGTC 734
Query 676 AAGTCGCTAGAGGCTTACCATTAACAACTCCCCCATTCTCAGACAGAACCATTCTCAATG 735
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||
Sbjct 735 AAGTCGCTAGAGGCTTACCATTAACAACTCCTCCATTCTCAGACCGAACCATTCTCAGTG 794
Query 736 CTCGAAACCCTCCAAAGATCGAGAATCTCCACCAAGAATTTGAAGAGATCGAAGATAAAT 795
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 795 CTCGAAACCCTCCAAAGATCGAGAATCTTCACCAAGAATTCGAAGAGATCGAAGATAAAT 854
Query 796 CCAACATCAACTCTCTTTACACCAAAGAGCCAACTCTCTACAGATCCTTCTGCTTTGATC 855
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
Sbjct 855 CCAACATCAACTCTCTCTATACCAAAGAGCCAACTCTCTACAGATCCTTCTGCTTTGACC 914
Query 856 CAGAGAAAATCAAGAAACTTAAGCTCCAAGCAACAGAGAACAGTGAGTCTCTCCTCGGTA 915
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 915 CAGAGAAAATCAAGAAACTTAAGCACCAAGCAACAGAGAACAGTGAGTCTCTCCTCGGTA 974
Query 916 ACTCATGCACAAGTTTTGAGGCTTTATCTGCTTTTGTCTGGAGAGCAAGAACCAAGTCGT 975
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 975 ACTCCTGCACAAGTTTTGAGGCTTTATCTGCTTTTGTGTGGAGAGCAAGAACCAAGTCGT 1034
Query 976 TGAAGATGTTGAGTGATCAGAAAACGAAGCTTCTCTTCGCCGTTGATGGTAGAGCCAAGT 1035
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1035 TGAAGATGTTGAGTGATCAGAAAACGAAGCTTCTCTTCGCCGTTGATGGGAGAGCCAAGT 1094
Query 1036 TCGAGCCTCAACTGCCAAAAGGGTACTTCGGAAATGGAATTGTTCTCACAAACTCCATCT 1095
| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1095 TTGAGCCTCAATTGCCAAAAGGGTACTTCGGAAATGGAATTGTTCTTACAAACTCCATCT 1154
Query 1096 GTGAAGCTGGGGAGCTTATCGAAAAACCGTTGAGTTTCGCGGTGGGATTAGTCAGAGAAG 1155
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1155 GTGAAACTGGAGAGCTTATCGAAAAACCGTTGAGTTTCGCGGTGGGATTAGTCAGAGAAG 1214
Query 1156 CCATTAAGATGGTAACTGATGGGTACATGAGATCTGCTATTGATTACTTCGAAGTCACGA 1215
| ||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1215 CAATTAAGATGGTCACTGATGGATACATGAGATCTGCGATTGATTACTTCGAAGTCACGA 1274
Query 1216 GAGCAAGACCTTCTCTTTCCTCGACTCTTCTGATCACTACATGGTCAAGATTGGGTTTCC 1275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1275 GAGCAAGACCTTCTCTTTCCTCGACTCTTCTGATCACTACATGGTCAAGATTGGGTTTCC 1334
Query 1276 ACACGACAGATTTCGGTTGGGGAGAACCGATTTTATCCGGTCCAGTAGCTTTGCCTGAGA 1335
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1335 ACACGACAGATTTCGGTTGGGGAGAACCGATTTTGTCCGGTCCAGTAGCTTTGCCTGAGA 1394
Query 1336 AAGAAGTAACTCTGTTTTTGTCTCATGGAGAACAGAGGAGAAGCATCAATGTGCTTCTTG 1395
||||||| ||||||||| ||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1395 AAGAAGTGACTCTGTTTCTGTCTCATGGAGAACAGAGAAGAAGCATAAATGTGCTTCTTG 1454
Query 1396 GACTTCCCGCTACAGCCATGGATGTGTTTCAAGAACAGTTTTTACAGATATAATATGAAC 1455
||||||| | | ||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1455 GACTTCCTGTTTCAGCCATGGATGTGTTTCAAGAACAGTTTTTACAGATATAA-A--AAT 1511
Query 1456 AACGACAAAATACAAATATCTGGCAATTATTGTCAAAACCTATTCGTTTTACTCTGTTTT 1515
| | || ||| ||||||||||||||||||||||||||||||||||
Sbjct 1512 A---------T-CA-------GGCTATTATTGTCAAAACCTATTCGTTTTACTCTGTTTC 1554
Query 1516 TCTTGCTTCCtttttt 1531
||||||||||||||||
Sbjct 1555 TCTTGCTTCCTTTTTT 1570
Score = 102 bits (55), Expect = 8e-21
Identities = 63/66 (95%), Gaps = 3/66 (5%)
Strand=Plus/Plus
Query 18 CAAAAGTTCCATTCTTTTT---CACAAAGCCATTGTGCTGTTTTCTCCATTTGGATCAAA 74
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 CAAAAGTTCCATTCTTTTTCACCACAAAGCCATTGTGCTGTTTTCTCCATTTGGATCAAA 60
Query 75 ATGGTT 80
||||||
Sbjct 61 ATGGTT 66
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62506092045
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5