BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G41050.1

Length=922
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg355871 jgi|Araly1|355871|fgenesh1_pg.C_scaffold_7003044           785    0.0  


> Ahg355871 jgi|Araly1|355871|fgenesh1_pg.C_scaffold_7003044
Length=519

 Score =  785 bits (425),  Expect = 0.0
 Identities = 483/512 (94%), Gaps = 0/512 (0%)
 Strand=Plus/Plus

Query  250  AGAAACTGATAATGCTTCTGTTACTTCTGCAACTTCTGTCCTTAAACTCTCTGTCTCTGA  309
            |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  8    AGAAACTGATAATGTTTCTGTTACTTCTGCAACTTCTGTCCTTAAACACTCTGTCTCTGA  67

Query  310  AACATTCTTCAGCCAAACCAAATGGAAAGATCACTGTAATGGGTCTTGTTTACTGCGACG  369
            ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| 
Sbjct  68   AACATTCTTCAGCTAAACCAAATGCAAAGATCACTGTAATGGGTCTTGTTTACTGCGACA  127

Query  370  TCTGCTCCAACAACAGTTTCTCCAATCACAGCTATTTCATTCCCGGTGTGGAAGTGAGAA  429
            ||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||
Sbjct  128  TCTGCTCCAACAACAGTTTCTCCAAACATAGCTACTTCATTCCCGGTGTGGAAGTGAGAA  187

Query  430  TAATCTGCAGATTCAATTCAGCTTCATCGAGAACTAGAGAGATGATTACGTTCTCTGCAA  489
            ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct  188  TAATCTGCAGATTCAATTCAGCTTCGTCGAGAACTAGAGAGATGATAACGTTCTCTGCAA  247

Query  490  ATCGAACCACAAATGAGCTTGGACTCTACAAGCTAGACATAACGTCTCTGGAAGGCGTTG  549
            ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct  248  ATCGAACCACAAATGAGCTTGGACTCTACAAGCTAGACATAACATCTTTGGAAGGCGTTG  307

Query  550  CTTGCGCCGCTGAAGCAAAGAAAGATTCTCTAATGGCTTCCTGTCAAGCAAGCTTGATCG  609
            ||||||| || ||||||||||||||||||||||||||||| ||||| ||||||||||| |
Sbjct  308  CTTGCGCTGCAGAAGCAAAGAAAGATTCTCTAATGGCTTCTTGTCAGGCAAGCTTGATTG  367

Query  610  GTAGGTCCAAAGATTCCTGCAACGTTCCTGGCTTCAGAACTACAACGGAGCAGGTTGTGT  669
            |||| ||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||
Sbjct  368  GTAGCTCCAAAGATTCTTGCAACGTTCCTGGCTTTAGAACTACAACGGATCAGGTTGTGT  427

Query  670  TTAAGTCCAAGATATCTAATCTCTGTGTCTATGGGTTTACTGCTTTAAATTTCAGACCTT  729
            ||||||||||||  || ||||||||||||||||||||||| ||||||||||| ||||| |
Sbjct  428  TTAAGTCCAAGAGGTCGAATCTCTGTGTCTATGGGTTTACAGCTTTAAATTTTAGACCCT  487

Query  730  TAGAGAAGAATCTTCATTTGTGTGGCAAGTAA  761
            || ||||||||||||| |||||||||||||||
Sbjct  488  TACAGAAGAATCTTCACTTGTGTGGCAAGTAA  519



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 34196256549


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5