BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41060.1
Length=1672
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947625 jgi|Araly1|947625|scaffold_703854.1 2008 0.0
Ahg484481 jgi|Araly1|484481|fgenesh2_kg.5__473__AT3G26935.1 905 0.0
> Ahg947625 jgi|Araly1|947625|scaffold_703854.1
Length=1273
Score = 2008 bits (1087), Expect = 0.0
Identities = 1208/1267 (95%), Gaps = 6/1267 (0%)
Strand=Plus/Plus
Query 270 gagagagagagaTGTATGTGGTGACGCCTCCTCAAAGATCCGGTTTTGGATCCGATTGTG 329
|||||| |||||||||||| |||||||||||||||||||| |||||||||||||| ||||
Sbjct 10 GAGAGAAAGAGATGTATGTAGTGACGCCTCCTCAAAGATCTGGTTTTGGATCCGACTGTG 69
Query 330 ATTTACGGGTTTACCAAACATGGAAAGGAAGCAATATATTTTGTCTTCAAGGAAGGTTTA 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 70 ATTTACGGGTTTACCAAACATGGAAAGGAAGCAATATATTTTGTCTTCAAGGAAGGTTTA 129
Query 390 TCTTCGGGCCGGATGTAAGATCACTTGGTCTGACCATAAGTCTTATTGTGGCACCTGTTA 449
| |||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 130 TTTTCGGGCCAGATGTAAGATCACTTGGTCTGACCATAAGTCTTATCGTGGTTCCTGTTA 189
Query 450 CAATTTTCTGCATCTTCGTCGCTAGCAAACTAATGGATGACTTCTCTGATAGTTGGGGAG 509
| ||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||
Sbjct 190 CGATTTTCTGCATCTTCGTTGGTAGCAAACTAATGGAGGACTTCTCTGATAGTTGGGGAG 249
Query 510 TCTCAATAATCCTTGTTGCTGTTGTCTTCACCATTTATGATTTGATTTTGCTGATGCTTA 569
| |||||| || ||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 250 TATCAATAGTCTTTGTTGCTGTTGTCTTCACCATTTATGATTTAATTCTGCTGATGCTTA 309
Query 570 CATCCGGAAGAGATCCAGGGATTATCCCAAGAAATTCTCATCCTCCAGAACCAGAAGTTG 629
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 310 CATCCGGAAGAGATCCAGGGATTATCCCAAGAAATTCTCATCCTCCAGAACCTGAAGTTC 369
Query 630 TTGATGGCAACACGGGCTCGGGAACAAGCCAAACTCCAAGATTGCCTCGTGTTAAAGAAG 689
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 370 TTGATGGCAACACGGGCTCGGGGACAAGCCAAACTCCAAGATTGCCTCGCGTTAAAGAAG 429
Query 690 TGGAAGTTAATGG-AAAAGTATTCAAGGTCAAGTACTGTGATACTTGCATGCTCTATAGA 748
| ||||||||||| |||| |||| |||||||||||||||||||| |||||||||||||||
Sbjct 430 TAGAAGTTAATGGCAAAA-TATTTAAGGTCAAGTACTGTGATACCTGCATGCTCTATAGA 488
Query 749 CCGCCTCGCTGCTCACATTGTTCGATTTGCAACAACTGTGTAGAAAGGTTTGACCATCAC 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 CCGCCTCGCTGCTCACATTGTTCGATTTGCAACAACTGTGTAGAAAGGTTTGACCATCAC 548
Query 809 TGTCCTTGGGTTGGTCAATGTATTGCTCAAAGAAACTATCGATTCTTCTTCATGTTTGTC 868
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 549 TGTCCTTGGGTTGGTCAATGTATTGCCCAAAGGAACTATCGATTCTTCTTCATGTTTGTC 608
Query 869 TTCTCCACGACTCTTCTCTGTGTATATGTGTTCGCCTTTTGTTGTGTCTACATAAAGAAG 928
|||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||
Sbjct 609 TTCTCCACGACTCTTCTCTGCATATATGTGTTCGCCTTTTGTTGTGTCTATATAAGGAAG 668
Query 929 ATCAAAGAGTCCGAAGATATAAGTATCTTGAAAGCAATGCTCAAAACTCCAGCTTCCATT 988
|||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 669 ATCAAAGAATCTGAAGATATAACCATCTTGAAAGCAATGCTCAAAACTCCAGCTTCCATT 728
Query 989 GCTCTGATACTCTACACATTCATATCTACATTCTTCGTTGGAGGCTTAACATGTTTCCAT 1048
|||||||||||||||||||||||||| || || |||||||| |||||||||||||| |||
Sbjct 729 GCTCTGATACTCTACACATTCATATCGACGTTTTTCGTTGGGGGCTTAACATGTTTTCAT 788
Query 1049 CTCTATCTCATCAGCACAAATCAGACTACATATGAGAATTTCAGATACAGTTATGATC-G 1107
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 789 CTCTATCTCATCAGCACAAATCAGACTACATATGAGAATTTCAGATACAGTTATGA-CAG 847
Query 1108 GCATAGCAACCCACATAACAAAGGAGTGGTTGATAACTTCAAAGAAATCtttttttCTCC 1167
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 848 GCTTAGCAACCCACATAACAAAGGAGTGGTTGATAACTTTAAAGAAATCTTTTTTTCTCC 907
Query 1168 AATACCTCCTTCAAAGAACAACTTCAGGGCTATGGTACCAAGGGAAAATCCAATGCCGTC 1227
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 908 AATACCTCCTTCAAAGAACAACTTCAGGGCTATGGTACCAAGGGAAAATCCAATGCCGCC 967
Query 1228 GAGATCAGTTGTTGGCGGTTTTATGAGTCCAAACATGGGAAAGGCCAATGATGATATTGA 1287
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 968 GAGATCAGTTGTTGGCGGTTTTATGAGTCCAAACATGGGAAAAGCCAATGATGATATTGA 1027
Query 1288 AATGGGGAGGAAGGGTGTTTGGGCAATGGCTGAACATGGTGATGGCAAAGATGGCAATAA 1347
|||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1028 AATGGGGAGGAAAGGCGTTTGGGCAATGGCTGAACATGGTGATGGCAAAAATGGCAATAA 1087
Query 1348 CAATGAACGGTTTCATGTTAACGACAATGAGTTAAACGAGTTATCACCAGACATGGGGAA 1407
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1088 CAATGAACGGTTTCATGTTAACGACAATGAGTTAAACGAGTTATCACCAGACATGAGGAC 1147
Query 1408 CATAGT-GAATGGTGATGAGCAAATCAATAGGCCAAACAATCACCCGAGGAACGCAAACT 1466
|||||| || ||||||||| |||||| ||||||||| |||||||||||||||||||||||
Sbjct 1148 CATAGTTGA-TGGTGATGAACAAATCGATAGGCCAAGCAATCACCCGAGGAACGCAAACT 1206
Query 1467 GGGAAATGTCACCAGAAGTTATGGCCTTATCAGCAAGAAGAGCTTAGAAGCAGGTTAAGA 1526
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1207 GGGAAATGTCACCAGAAGTTATGGCCTTATCAGCAAGAAGAGCTTAGAAACAGGTTAAGA 1266
Query 1527 GAAAATT 1533
|||||||
Sbjct 1267 GAAAATT 1273
> Ahg484481 jgi|Araly1|484481|fgenesh2_kg.5__473__AT3G26935.1
Length=1864
Score = 905 bits (490), Expect = 0.0
Identities = 894/1082 (83%), Gaps = 56/1082 (5%)
Strand=Plus/Plus
Query 262 TAGAAAGTgagag-agagagaTGTATGTGGTGACGCCTCCTCAAAGATCCGGTTTTGGAT 320
|||||| |||| | ||||||||||||| ||| | |||||||| |||| | || |||||
Sbjct 169 TAGAAATTGAG-GTTGAGAGATGTATGTAGTGCCTCCTCCTCAGCGATCTGATTCTGGAT 227
Query 321 CCG-ATTGTGATTTACGGGTTTACCAAACATGGAAAGGAAGCAATATATT-TTGTCTTCA 378
|| || |||||||| ||||||||||||| |||||||| ||||||||||| || ||||||
Sbjct 228 -CGAATGGTGATTTAAGGGTTTACCAAACTTGGAAAGGCAGCAATATATTCTT-TCTTCA 285
Query 379 AGGAAGGTTTATCTTCGGGCCGGATGTAAGATCACTTGG-TCTGACCATAAGTCTTATTG 437
||||||||| | || || || |||||||||||| |||| |||||||| |||| ||||
Sbjct 286 GGGAAGGTTTGTATTTGGCCCAGATGTAAGATCA-TTGGCGCTGACCATTTGTCTCATTG 344
Query 438 -TGGCACCTGTTACAATTTTCTGCATCTTCGTCGCTAGCAAACTAATGGATGACTTCTCT 496
|| | ||||||||||||||||||||||| || || || || || || |||||||||||
Sbjct 345 CTGTC-CCTGTTACAATTTTCTGCATCTTTGTTGCAAGGAAGCTGATTGATGACTTCTCC 403
Query 497 GATAGTTGGGGAGTCTCAATAAT-CCTTGTTGCTGTTGTCTTCACCATTTATGATTTGAT 555
||||| |||||||| |||||| | | ||| || || || ||||||||||||||||| ||
Sbjct 404 GATAGCTGGGGAGTATCAATAGTAGC-TGTCGCCGTCGTGTTCACCATTTATGATTTAAT 462
Query 556 T-TTGCTGATGCTTACATCCGGAAGAGATCCAGGGATTATCCCAAGAAATTCTCATCCTC 614
| || ||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 463 TCTT-CTGCTGCTTACATCCGGAAGAGATCCAGGTATTATCCCAAGAAATGCTCATCCTC 521
Query 615 CAGAACCAGAAGTTGTTGATGGCAACACGGGCT-C-GGGAACAAGCCAAACT-C-CA--- 667
|||| || |||| ||||||| |||| || | | ||| | |||| ||| | ||
Sbjct 522 CAGAGCCTGAAGCCCTTGATGGAAACA-TGGATGCAGGG-GCTGGCCAGACTCCGCAGCT 579
Query 668 -AGATTGCCTCGTGTTAAAGAAGTGGAAG-TTAATGGAA-AAGTATTCAAGGTCAAGTAC 724
|| ||||||| |||| ||||| | || ||||||||| | ||| ||||||||||||
Sbjct 580 GCGACTGCCTCGCATTAAGGAAGTAG-AGCTTAATGGAATCA-CATTTAAGGTCAAGTAC 637
Query 725 TGTGATACTTGCATGCTCTATAGACCGCCTCGCTGCTCACATTGTTCGATTTGCAACAAC 784
||||| || |||||||||||||| |||||||||||||| ||||| || ||||||||||||
Sbjct 638 TGTGACACGTGCATGCTCTATAGGCCGCCTCGCTGCTCCCATTGCTCAATTTGCAACAAC 697
Query 785 TGTGTAGAAAGGTTTGACCATCACTGTCCTTGGGTTGGTCAATGTATTGCTCA-AAGAAA 843
|| ||||||||||||||||||||||| || |||||||| |||||||||| | || ||
Sbjct 698 TGCGTAGAAAGGTTTGACCATCACTGCCCGTGGGTTGGCCAATGTATTG-GGATGAGGAA 756
Query 844 CTATCGATTCTTCTTCATGTTTGTCTTCTCCACGACTCTTCTCTGTGTATATGTGTTCGC 903
||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||
Sbjct 757 CTACCGATTCTTCTTCATGTTTGTCTTCTCCACGACCCTTCTCTGTATATATGTGTTTGC 816
Query 904 CTTTTGTTGTGTCTACATAAAGAA-GATCAAAGAGTCCGAAG-ATATAAGTATCTTGAAA 961
||| || || ||||| |||| ||| ||| | || || || | | | || | |||| ||
Sbjct 817 CTTCTGCTGGGTCTATATAA-GAAAGATTATGGAATCAGA-GCACACAACCA-CTTGGAA 873
Query 962 G-CAATGCTCAAAACTCCAGCTTCCATTGCTCTGATACTCTACACATTCATATCTACAT- 1019
| ||||||| |||||||| || ||||||| ||| ||| |||||||||||||||| | ||
Sbjct 874 GGCAATGCTTAAAACTCCTGCCTCCATTGTTCTAATAATCTACACATTCATATC-A-ATG 931
Query 1020 TC-TTCGTTGGAGGCTTAACATGTTT-CCATCTCTATCTCATCAGCACAAATCAGACTAC 1077
| || ||||| ||||||||| |||| |||| | |||||||||||||| || ||||| ||
Sbjct 932 TGGTTTGTTGGTGGCTTAACA-GTTTTCCATTTATATCTCATCAGCACGAACCAGACGAC 990
Query 1078 ATATGAGAATTTCAGATACAGTTATGATCGGC-ATAGCAACCCACATAACAAAGGAGTGG 1136
||||||||||||| ||||||| |||||||||| | ||||||||||||||||| |||||||
Sbjct 991 ATATGAGAATTTCCGATACAGATATGATCGGCGA-AGCAACCCACATAACAAGGGAGTGG 1049
Query 1137 TTGATAACTTCAAAGAAATC-tttttttCTC-CAATACCTCCTTCAAAGAACAACTTCAG 1194
|| ||||||||||||||| | |||||||| | |||| ||||||||||||||| |||| ||
Sbjct 1050 TTAATAACTTCAAAGAAA-CATTTTTTTC-CACAATCCCTCCTTCAAAGAACGACTTTAG 1107
Query 1195 GGCTATGGTACCAAG-G-GAAAATCCAATGCCGTCG-AGATCAGTTGTTGGCGGTTTTAT 1251
|||||||| ||| | | ||| |||| |||| || ||||| || | || ||||||||
Sbjct 1108 AGCTATGGT-CCA-GCGTGAACCTCCATTGCC-TCCTAGATCTGTAGCAGGTGGTTTTAT 1164
Query 1252 GAGTCCAAACATGGG-AAAGGCCAATGATGATATTGAAATGGGGAGGAAGGGTGTTTGGG 1310
||||||||||||||| |||| |||||||||| ||||||||||| ||||||| ||||||||
Sbjct 1165 GAGTCCAAACATGGGTAAAG-CCAATGATGAGATTGAAATGGGAAGGAAGGCTGTTTGGG 1223
Query 1311 CA 1312
||
Sbjct 1224 CA 1225
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62696543270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5