BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41070.1
Length=1460
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493870 jgi|Araly1|493870|fgenesh2_kg.7__3303__AT5G41070.1 2122 0.0
Ahg484479 jgi|Araly1|484479|fgenesh2_kg.5__471__AT3G26932.1 628 2e-179
> Ahg493870 jgi|Araly1|493870|fgenesh2_kg.7__3303__AT5G41070.1
Length=1438
Score = 2122 bits (1149), Expect = 0.0
Identities = 1315/1393 (94%), Gaps = 20/1393 (1%)
Strand=Plus/Plus
Query 1 ATTTAGAACCTTTAGTACCTTACCATGTGAGTGAAGAGTTCaaaaacctctgcaaaaact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATTTAGAACCTTTAGTACCTTACCATGTGAGTGAAGAGTTCAAAAACCTCTGCAAAAACT 60
Query 61 ttcttttttatctctctctcttctttaaacttactttcaaacACTAAATAGCCAAAA-CT 119
|||||||| | |||||||| |||||||||||||||||||||| |||| |||||||| ||
Sbjct 61 CTCTTTTTTTTATCTCTCTCCTCTTTAAACTTACTTTCAAACATTAAACAGCCAAAACCT 120
Query 120 TAAGATACCAAATTTCAACAGGG-GAAAAAATGTATAAGAATCAGCTTCAAGAGCTTGCA 178
| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 121 T-AGATACCAAATTTTTACAGGGAAAAAAAATGTATAAGAATCAGCTTCAAGAGCTTGCA 179
Query 179 CAGAGAAGTTGTTTCAACTTACCATCATATACTTGCATAAGAGAAGGACCAGATCATGCT 238
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CAGAGAAGCTGTTTCAACTTACCATCATATACTTGCATAAGAGAAGGACCAGATCATGCT 239
Query 239 CCAAGATTCAAAGCTTCTGTTAACTTCAATGGTGAGATATTTGAGAGTCCCACTTACTGT 298
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 240 CCAAGATTCAAAGCTTCTGTTAACTTCAATGGTGAGATATTTGAAAGTCCCACTTACTGT 299
Query 299 TCTACTCTCAGACAAGCTGAGCATGCAGCTGCTGAAGTTTCCCTTAATGTCCTTTCGTCT 358
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 300 TCTACTCTCAGACAAGCTGAGCATGCAGCTGCTGAAGTTTCTCTTAATGTCCTTTCCTCT 359
Query 359 AGAGTCCCTTCAAAGTCTCTA-ACTGCTAAGATTCTTGATGAGACAGGGATTTACAAGAA 417
|||||||||||||| || || ||||||||||||||||||||||||||||||||||||||
Sbjct 360 AGAGTCCCTTCAAAATC-CTTGACTGCTAAGATTCTTGATGAGACAGGGATTTACAAGAA 418
Query 418 CCTGCTTCAAGAGACAGCACATAGAGCTGGTCTTGATCTACCAATGTACACAAGTGTGAG 477
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 419 CCTGCTTCAAGAGACAGCACACAGAGCTGGTCTTGATCTACCAATGTACACAAGTGTGAG 478
Query 478 ATCAGGATCTTGTCACTTCCCAGGTTTCTCTTGTACTGTTGAACTTGCTGGGATGACGTT 537
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 479 ATCAGGATCTTGTCACTTCCCAGGTTTCTCTTGTACTGTGGAACTTGCTGGGATGA-GTT 537
Query 538 T-ACAGGAGAATCAGCAAAGACAAAGAAACAAGCTGAGAAAAACGCAGCCATTGCAGCTT 596
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TTACAGGAGAATCAGCAAAGACAAAGAAACAAGCTGAGAAAAACGCAGCCATTGCAGCTT 597
Query 597 GGTCCTCTTTGAAGAAAATGTCAAGCTTGGATTCACAAGATGAAGAGAAGGAACAAGAAG 656
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 598 GGTCCTCTTTGAAGAGAATGTCAAGCTTGGATTCTCAAGATGAAGAGAAGGAACAAGAAG 657
Query 657 CAGTAGCAAGAGTACTCTCAAGATTTAAACCCAAAGAAGTAAGAAGACGAGAGACAACAA 716
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 658 CAGTAGCAAGAGTACTCTCAAGATTTAAACCCAAAGAAGTAAGAAGAAGAGAGACAACAA 717
Query 717 ACCAATGGAGAAGAAGAACAAGTCAACAAGATTCAAACAAGGATTTGTTGATTGAGAGAT 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 ACCAATGGAGAAGAAGAACAAGTCAACAAGATTCAAACAAGGATTTGTTGATTGAGAGAT 777
Query 777 TGAGATGGATCAATCTTTTGACCAATCAAGCTTCTTCATCATCATCAACATCA--A-CA- 832
||||||||||||| || |||||||||||||||||||||||||||||| ||||| | ||
Sbjct 778 TGAGATGGATCAACCTATTGACCAATCAAGCTTCTTCATCATCATCATCATCATCATCAA 837
Query 833 C-C-GAATCAACACAAAAACTCCAGTTTCATCTCTCTAATTCCCCCACCACCACCACCTA 890
| | ||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 838 CACAGAATCAACACAAAAAAACAAGTTTCATCTCTCTAATTCCCCCACCACCACCACCTA 897
Query 891 AATCCTCCAAAATTTTGCCATTTATCCAGCAATACAAAGACAGATCATCACAAGAAGCTA 950
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 898 AATCCTCCAAAATTTTGCCATTTATCCAGCCATACAAAGACAGATCATCACAAGAAGCTA 957
Query 951 AGACAGAGACAGCGACAGAGATGATCAACAGCAAAGCCAAAGTCAATGAAACATCAACCA 1010
||||||||||| ||||||||||||||| |||||| |||||| ||||||||||||||| ||
Sbjct 958 AGACAGAGACACCGACAGAGATGATCATCAGCAAGGCCAAACTCAATGAAACATCAAACA 1017
Query 1011 GATTGAGTAAGCAAATGCCCTTTTCCGACA-TGAACAGATACAACTTTGTCGGAGGGTGT 1069
|||||||||| ||||||||||||||||||| || |||||||||||| |||||||| |||
Sbjct 1018 GATTGAGTAAACAAATGCCCTTTTCCGACAATGG-CAGATACAACTTCGTCGGAGGATGT 1076
Query 1070 AGCGTAAACCCTTATAGTCTGGCTCCAGCGGTTCAAATGAGATCAGTGATTCCAGTTTTC 1129
||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1077 AGCGTAAACCCTTTTAGTCTGGCTCCAGCAGTTCAAATCAGATCAGTGATTCCAGTTTTC 1136
Query 1130 GCAGCTCCACCACCGAAACCAAACCCCAACCTTAACCCATCATCATTATCATCATCAGTC 1189
|||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1137 GCAGCTCCACCATCGAAACCAAACCCTAACCTTAACCCATCATCATTATCATCGTCAGTC 1196
Query 1190 AATGAATTCACCTCATCCAATAAT-TCCTGCTCTGTTCTGAATACGCCGGGATTGGGAGG 1248
||||||| ||||||||||| ||| || || ||||||||||||||||||| |||||||||
Sbjct 1197 AATGAATCCACCTCATCCA-TAAACTCATGTTCTGTTCTGAATACGCCGGTATTGGGAGG 1255
Query 1249 CCAAGAGAAGAAGAATCTAA-CTCGCGAAATGATCAAACTTGGTTCAGAATCGAGAATTT 1307
|||| ||||||||| || || || | ||||| ||||||||||||| ||||||||||||||
Sbjct 1256 CCAAAAGAAGAAGAGTCAAAGCTGG-GAAATAATCAAACTTGGTTTAGAATCGAGAATTT 1314
Query 1308 TGGATCAAACCCATGAT-AGTTAGCTAAATTTGGTTAATGGGTTAATCTCAAATTAAATC 1366
| |||||||||||||| ||||||||||||||||| || |||||||||||||||||||||
Sbjct 1315 CGAATCAAACCCATGATTAGTTAGCTAAATTTGGTAAAAGGGTTAATCTCAAATTAAATC 1374
Query 1367 CTTGTCAAGTGTT 1379
||||| |||||||
Sbjct 1375 CTTGTTAAGTGTT 1387
> Ahg484479 jgi|Araly1|484479|fgenesh2_kg.5__471__AT3G26932.1
Length=1476
Score = 628 bits (340), Expect = 2e-179
Identities = 516/597 (86%), Gaps = 28/597 (5%)
Strand=Plus/Plus
Query 149 ATGTATAAGAATCAGCTT-CAAGAGCTTGCACAGAGAAGTTGTTTCAACT-TACCATCAT 206
||||||||||||||| || ||||||||||||||||||||||||||||| | | |||||||
Sbjct 216 ATGTATAAGAATCAG-TTGCAAGAGCTTGCACAGAGAAGTTGTTTCAA-TCTCCCATCAT 273
Query 207 ATACTTGCATAAGAGAAGGACCAGATCATGCTCCAAGATTCAAAGCTTCTGTTAACTTCA 266
|||| |||| ||||||||||||||||||||||||||||||||||||| ||| ||||| |
Sbjct 274 ATACATGCACAAGAGAAGGACCAGATCATGCTCCAAGATTCAAAGCTAGTGTAAACTTTA 333
Query 267 ATGGTGAGATATTTGAGAGTCCC-ACTTACTGTTCTACTCTCAGACAAGCTGAGCATGCA 325
||||||| |||||||| || ||| ||||| ||||||||||||||||||||||||||| ||
Sbjct 334 ATGGTGAAATATTTGAAAG-CCCAACTTATTGTTCTACTCTCAGACAAGCTGAGCATTCA 392
Query 326 GCTGCTGAAGTTTCCCTTAATGTC-CTTTCGT-CTAGAGTCCCTTCAAAGTCTCTAACTG 383
|||||||||||| | |||| || | || || | | || || |||||||||||||||||||
Sbjct 393 GCTGCTGAAGTTGCTCTTAGTG-CTCTCTCTTCCAAGGGT-CCTTCAAAGTCTCTAACTG 450
Query 384 CTAAGA-TTCTTGATGAGACAGGGATTTACAAGAACCTGCTTCAAGAGACAGCACATAGA 442
|| ||| |||| |||||||| ||||| || ||||| ||||||||||||||||||||||||
Sbjct 451 CT-AGAGTTCTAGATGAGACTGGGATCTATAAGAATCTGCTTCAAGAGACAGCACATAGA 509
Query 443 GCTGGTCTTGATCTACCAATGTACACAAGTGTGAGATCAGGATCTTGTCACTTCCCAG-G 501
||||||||||||||||| | ||||||||||||||||||||| || ||||| ||||| |
Sbjct 510 GCTGGTCTTGATCTACCGGTTTACACAAGTGTGAGATCAGGACCTGGTCACATCCCAACG 569
Query 502 TTTCTCTTGTACTGTTGAACTTGCTGGGATGACGTTT-ACA-GGAGAATCAGCAAAGACA 559
|| |||||| ||||| || |||||||| |||| |||| | | |||||||||||||||||
Sbjct 570 TT-CTCTTGCACTGTGGAGCTTGCTGGAATGA-GTTTTA-ATGGAGAATCAGCAAAGACT 626
Query 560 AAGAAACAAGCTGAGAAAAACGCAGCCATTGCAGCTTGGTCCTCTTTGAAGAAAA-TGTC 618
||||| ||||||||||| || ||||||||||||||||||| ||| |||| ||||| || |
Sbjct 627 AAGAAGCAAGCTGAGAAGAATGCAGCCATTGCAGCTTGGTTCTCCTTGA-GAAAAATGCC 685
Query 619 AAGCTTGGATTCAC-AAGA--TGAAGAGAAGGAACAAGAAGCAGTAGCAAGAGTACTCTC 675
||||||||| || |||| |||||||||||||||||| | ||| |||||||| |||||
Sbjct 686 AAGCTTGGACCCATTAAGAGGTGAAGAGAAGGAACAAGAGGTAGTTGCAAGAGTCCTCTC 745
Query 676 AAGATTTAAACCCAAAGAAGT-AAGAAGACGAGAGACAACAAACCAATGGAGAAGAA 731
|||||||| |||||||||||| || |||| |||| || ||||||| | |||||||
Sbjct 746 AAGATTTAGACCCAAAGAAGTGAA-AAGAAGAGA-AC--CAAACCAGTCAAGAAGAA 798
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54621411330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5