BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41080.1
Length=1389
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493869 jgi|Araly1|493869|fgenesh2_kg.7__3302__AT5G41080.1 1971 0.0
> Ahg493869 jgi|Araly1|493869|fgenesh2_kg.7__3302__AT5G41080.1
Length=1338
Score = 1971 bits (1067), Expect = 0.0
Identities = 1220/1293 (94%), Gaps = 13/1293 (1%)
Strand=Plus/Plus
Query 101 tctactctTGAGAAATGGCTCTTAGAACTGTGCTCGTCTCCGACGTCCCTAGCCTCCCGG 160
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 48 TCTACTCTTGA-AAATGGCTCTTAGAACTGTGCTCGTCTCCGACGTCCCTAGCCTCCCGG 106
Query 161 ATTCTGTCTACGGTTTATCCGAAGGTTTAGAGTTGAGCAAACCGACGTCGTTTAGGTTAC 220
| ||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 107 AGTCTGTTTACGGATTATCCGAAGGTTTAGAGTTGAGCAAACCGACATCGTTTAGGTTAC 166
Query 221 CGGGGTTTTCGGTGATTGGACATAGAGGAATCGGTATGAATGTGTTGCAATCGTCTGATC 280
|||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 167 CGGGTTTTTCGGTTATTGGACACAGAGGAATCGGTATGAATGTGTTGCAATCGTCTGATC 226
Query 281 GGAGAGCGAGAGGTGTTAAAGAAAACTCGATTCTTTCATTCAATTCCGCCGCTAAGTATC 340
||||| ||||||||||||| |||||||| |||||||| |||||||||||||| |||||||
Sbjct 227 GGAGAACGAGAGGTGTTAAGGAAAACTCAATTCTTTCGTTCAATTCCGCCGCCAAGTATC 286
Query 341 CGATTGATTTCATTGAGTTCGATGTTCAGGTGACAAAAGATGATTGCCCTGTCATTTTCC 400
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 287 CGATTGATTTCATTGAGTTCGATGTTCAGGTGACAAAAGATGATTACCCTGTTATTTTCC 346
Query 401 ATGATGATTTCATCTACTCTGAAGAAAATGGTATTGTTAATGAGAGTAGAGTGACGGATC 460
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 347 ATGATGATTTTATCTACTCTGAAGAAAATGGTATTGTTAATGAGAGTAGAGTGACGGATC 406
Query 461 TGAGTCTGTCTGAGTTTCTCCTTTATGGACCTCAGAAGGAAACTGAGAAAATAGGGAAGA 520
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 407 TTAGTCTGTCTGAGTTTCTCCTTTACGGACCTCAGAAGGAAACTGAGAAAATAGGGAAGA 466
Query 521 CACTGATGAGGAAATCTAAAGAAGGGAAGGTTTTGAAATGGGACGTTGATTTGGATGATT 580
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 467 CCCTGATGAGGAAATCTAAAGAAGGAAAGGTTTTGAAATGGGACGTTGATTTGGATGATT 526
Query 581 CTCTTTGTACGTTGCAAGAAGCTTTTGAACAAGTTGAACAAACTCTTGGGTTCAATATCG 640
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 527 CTCTTTGCACGTTGCAAGAAGCTTTTGAACAAGTTGAACAAACTCTGGGGTTCAATATCG 586
Query 641 AGTTGAAATTTGATGATCAGACCGTCTATGAACGAGAGTTTCTTGTCCATATCCTGAGAT 700
|||||||||| ||||||||||| || |||||||||||||||||||| ||| |||||||||
Sbjct 587 AGTTGAAATTCGATGATCAGACGGTTTATGAACGAGAGTTTCTTGTTCATGTCCTGAGAT 646
Query 701 CAGTACTACAGGTGGTCTCTAATTATGCTAAAGACAGACCAGTAATCTTCTCAAGTTTCC 760
|||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 647 CAGTTTTGCAGGTGGTCTCTAATTATGCTAAAGACAGACCAGTGATCTTCTCAAGTTTCC 706
Query 761 AACCAGATGCAGCTAAGCTTGTTAGGGAACTGCAGAGCACTTACCCTGTTTTCTTTCTGA 820
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 AACCAGATGCAGCAAAACTTGTTAGGGAACTGCAGAGCACTTACCCTGTTTTCTTTCTGA 766
Query 821 CTGATGCGGGAAACGAGATTCACAATGACGAGAGAAGAAACTCGCTCGAAGAAGCCATTC 880
|||||||||| || ||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 767 CTGATGCGGGGAATGAGGTTCACAATGACGAGAGAAGAAACTCACTCGAAGAAGCCATTC 826
Query 881 AAGTTTGCTTGGAAGGAGGTCTTCAAGGTATTGTTTCAGAGGTAAAAGGAGTGTTCAGGA 940
|||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| |
Sbjct 827 AAGTTTGCTTGGAAGGGGGTCTTCAAGGCATTGTCTCAGAGGTAAAAGGAGTGTTCAGAA 886
Query 941 ACCCAGCAGCCATTAGCAAGATCAAAGAATCTAACCTCTCTCTCCTCACATACGGCAAAC 1000
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 887 ACCCAGCAGCCATTAGCAAGATCAAAGAATCTAACCTCTCTCTTCTCACATACGGCAAAC 946
Query 1001 TCAACAATGTCGGAGAGGCAGTGTACATGCAATATGTGATGGGGATCGATGGAGTGATTG 1060
| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 947 TAAACAATGTGGGAGAGGCAGTGTACATGCAATATGTGATGGGGATCGATGGAGTTATTG 1006
Query 1061 TAGATTTTGTTGAGGAGATTATAGAGTCCACGACAC-GCATGATGATAAGACCACCACCA 1119
|||||||||||||||| |||||| |||||||||||| | |||||||||||||||||||||
Sbjct 1007 TAGATTTTGTTGAGGAAATTATACAGTCCACGACACTG-ATGATGATAAGACCACCACCA 1065
Query 1120 ---TCATCATCACCATTACCATCACCTTCCAAGGATGATGATGTTGCCATTACAAGACCT 1176
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1066 CCATCATCATCACCATTACCATCACCTTCAAAGGATGATGATGTTGCCATTACAAGACCT 1125
Query 1177 GAGTTTTCACAGAAGGAGATTTCTTTTCTTCTCAAGCTTCTCTCTCAGTTGATACAACAT 1236
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1126 GAGTTTTCACAGAAGGAGATATCTTTTCTTCTCAAGCTTCTCTCTCAGTTGATACAACAT 1185
Query 1237 TGAT-AT--C--TCTgttttttcgttttcttttatcccaagtttctttttagggtttgat 1291
|||| || | ||| | ||||| ||||||||||||||||||||||||||| ||| ||
Sbjct 1186 TGATGATGACCATCTCTGTTTTCTTTTTCTTTTATCCCAAGTTTCTTTTTAATTTTTAAT 1245
Query 1292 tttcttattgatttaattattattctGGGTGTATTACCCAATAGTTGGAATTGTAAATAA 1351
|||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1246 TTTCTTGTTGATTTTTTTATTATTCTGGGTGTATTACCCAATAGTTGGAACTGTAAATAA 1305
Query 1352 TTATA-AAT-TTATTTCTTTTTACAAGGATTAA 1382
||||| ||| || ||||||||||||||||||||
Sbjct 1306 TTATATAATGTTCTTTCTTTTTACAAGGATTAA 1338
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51917003935
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5