BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G41090.1

Length=639
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg891555 jgi|Araly1|891555|Al_scaffold_0007_3541                    555    2e-157


> Ahg891555 jgi|Araly1|891555|Al_scaffold_0007_3541
Length=630

 Score =  555 bits (300),  Expect = 2e-157
 Identities = 484/567 (85%), Gaps = 35/567 (6%)
 Strand=Plus/Plus

Query  1    ATGGGCCCAACATAC--AG--A-G-CTTTGCCAGTAGGTATGAGGTTTCGTCCTTCAGAT  54
            |||||||||||||||  ||  | | | |||||| ||||||||||||||||||||||||||
Sbjct  1    ATGGGCCCAACATACAGAGATATGCCATTGCCAATAGGTATGAGGTTTCGTCCTTCAGAT  60

Query  55   TTGGAGTTGGCTGTTTACTTTTTGATCAAGAAAGCTTTAGGACTTCCCATGAAAGCTCTT  114
            |||||| |||||||||| |||||||| || ||||||||||||||| |||| ||||||| |
Sbjct  61   TTGGAGATGGCTGTTTATTTTTTGATAAATAAAGCTTTAGGACTTACCATAAAAGCTCGT  120

Query  115  ACTGTGCCCGACGAATGTAATGATATCTTCTCAACACATCCTCGCGACTTGCCTGGCTAT  174
            ||| | || || || ||| ||||||||||||||| ||||||||| |||||||||||||||
Sbjct  121  ACTATACCTGAAGAGTGTCATGATATCTTCTCAATACATCCTCGAGACTTGCCTGGCTAT  180

Query  175  GGAAGCGAAGAGCATTGGTACTTCTACTGC-AAGAAACCCAAGAATCAAGTTACTAGAAC  233
            |||||||||||||||||||||||||| ||| || ||||| ||||||||||||||||  ||
Sbjct  181  GGAAGCGAAGAGCATTGGTACTTCTATTGCCAAAAAACC-AAGAATCAAGTTACTACTAC  239

Query  234  GAAATCTTATAACCTCTGGATACCAACGGGAGAAAAAACTGATGTGTTAGATCCAAAGAA  293
             ||||||||| | |||||||||||||| |||||| |||||||||||||||||||||| ||
Sbjct  240  CAAATCTTATCATCTCTGGATACCAACAGGAGAAGAAACTGATGTGTTAGATCCAAAAAA  299

Query  294  GAATGGCGGCGAATTAGTCGGTATCAAGCATTCGTTTACTTTCATTGagaacgaagaaga  353
            ||||| ||   |||||||||||||||| |  || ||| ||||||||||||||||||||||
Sbjct  300  GAATGACG---AATTAGTCGGTATCAAACGGTCATTTGCTTTCATTGAGAACGAAGAAGA  356

Query  354  agaagaa------tctgataacaagaac---gg-----c-gatgaagaagaa---cCTCC  395
            |||||||      || ||||| || |||   ||     | ||||||||||||   |||||
Sbjct  357  AGAAGAACAAGAATCCGATAATAATAACAACGGTTTGTCTGATGAAGAAGAAAAACCTCC  416

Query  396  ACAATGCAATTGGTTCTTGGATGAAATCAGCCTCCCATTGACAGTTGTGGATACTGATTG  455
            ||||| ||||||||||||||||||||| |||||||||||||||||| | |||||||||||
Sbjct  417  ACAATACAATTGGTTCTTGGATGAAATTAGCCTCCCATTGACAGTTCTAGATACTGATTG  476

Query  456  GACTCTGTGTCATATCTTTTACGAGAAGGTTAAACCTGAATTTGGTAATTTGCA---T--  510
            |  | |||||||||||||| ||||||||||||||||||||| || ||||||||    |  
Sbjct  477  GGTTTTGTGTCATATCTTTAACGAGAAGGTTAAACCTGAATGTGTTAATTTGCTGCCTGC  536

Query  511  -ATAGTCGAATCTGAATCCGAATCCga  536
             ||| ||||||||||||||||||||||
Sbjct  537  TATAATCGAATCTGAATCCGAATCCGA  563



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23407471038


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5