BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G41090.1 Length=639 Score E Sequences producing significant alignments: (Bits) Value Ahg891555 jgi|Araly1|891555|Al_scaffold_0007_3541 555 2e-157 > Ahg891555 jgi|Araly1|891555|Al_scaffold_0007_3541 Length=630 Score = 555 bits (300), Expect = 2e-157 Identities = 484/567 (85%), Gaps = 35/567 (6%) Strand=Plus/Plus Query 1 ATGGGCCCAACATAC--AG--A-G-CTTTGCCAGTAGGTATGAGGTTTCGTCCTTCAGAT 54 ||||||||||||||| || | | | |||||| |||||||||||||||||||||||||| Sbjct 1 ATGGGCCCAACATACAGAGATATGCCATTGCCAATAGGTATGAGGTTTCGTCCTTCAGAT 60 Query 55 TTGGAGTTGGCTGTTTACTTTTTGATCAAGAAAGCTTTAGGACTTCCCATGAAAGCTCTT 114 |||||| |||||||||| |||||||| || ||||||||||||||| |||| ||||||| | Sbjct 61 TTGGAGATGGCTGTTTATTTTTTGATAAATAAAGCTTTAGGACTTACCATAAAAGCTCGT 120 Query 115 ACTGTGCCCGACGAATGTAATGATATCTTCTCAACACATCCTCGCGACTTGCCTGGCTAT 174 ||| | || || || ||| ||||||||||||||| ||||||||| ||||||||||||||| Sbjct 121 ACTATACCTGAAGAGTGTCATGATATCTTCTCAATACATCCTCGAGACTTGCCTGGCTAT 180 Query 175 GGAAGCGAAGAGCATTGGTACTTCTACTGC-AAGAAACCCAAGAATCAAGTTACTAGAAC 233 |||||||||||||||||||||||||| ||| || ||||| |||||||||||||||| || Sbjct 181 GGAAGCGAAGAGCATTGGTACTTCTATTGCCAAAAAACC-AAGAATCAAGTTACTACTAC 239 Query 234 GAAATCTTATAACCTCTGGATACCAACGGGAGAAAAAACTGATGTGTTAGATCCAAAGAA 293 ||||||||| | |||||||||||||| |||||| |||||||||||||||||||||| || Sbjct 240 CAAATCTTATCATCTCTGGATACCAACAGGAGAAGAAACTGATGTGTTAGATCCAAAAAA 299 Query 294 GAATGGCGGCGAATTAGTCGGTATCAAGCATTCGTTTACTTTCATTGagaacgaagaaga 353 ||||| || |||||||||||||||| | || ||| |||||||||||||||||||||| Sbjct 300 GAATGACG---AATTAGTCGGTATCAAACGGTCATTTGCTTTCATTGAGAACGAAGAAGA 356 Query 354 agaagaa------tctgataacaagaac---gg-----c-gatgaagaagaa---cCTCC 395 ||||||| || ||||| || ||| || | |||||||||||| ||||| Sbjct 357 AGAAGAACAAGAATCCGATAATAATAACAACGGTTTGTCTGATGAAGAAGAAAAACCTCC 416 Query 396 ACAATGCAATTGGTTCTTGGATGAAATCAGCCTCCCATTGACAGTTGTGGATACTGATTG 455 ||||| ||||||||||||||||||||| |||||||||||||||||| | ||||||||||| Sbjct 417 ACAATACAATTGGTTCTTGGATGAAATTAGCCTCCCATTGACAGTTCTAGATACTGATTG 476 Query 456 GACTCTGTGTCATATCTTTTACGAGAAGGTTAAACCTGAATTTGGTAATTTGCA---T-- 510 | | |||||||||||||| ||||||||||||||||||||| || |||||||| | Sbjct 477 GGTTTTGTGTCATATCTTTAACGAGAAGGTTAAACCTGAATGTGTTAATTTGCTGCCTGC 536 Query 511 -ATAGTCGAATCTGAATCCGAATCCga 536 ||| |||||||||||||||||||||| Sbjct 537 TATAATCGAATCTGAATCCGAATCCGA 563 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23407471038 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5