BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41100.1
Length=2239
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947621 jgi|Araly1|947621|scaffold_703850.1 2887 0.0
Ahg484476 jgi|Araly1|484476|fgenesh2_kg.5__468__AT3G26910.2 547 1e-154
> Ahg947621 jgi|Araly1|947621|scaffold_703850.1
Length=1802
Score = 2887 bits (1563), Expect = 0.0
Identities = 1726/1806 (96%), Gaps = 5/1806 (0%)
Strand=Plus/Plus
Query 186 TTGTTTAGTTCTATCTGGAGATATGATGAAAGCTTCGTTTGGAAGGTTAAGAAGATTCGC 245
|||||| |||| | | ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTGTTTTGTTCGA-C-GGAAATATGATGAAAGCTTCGTTTGGAAGGTTAAGAAGATTCGC 58
Query 246 ATTACCCAAAGCCGATGCGATTGATATAGGAGAGCTTTTTCCCACTGCACAAATTGAAGG 305
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 59 ATTACCCAAATCCGATGCGATTGATATAGGAGAGCTTTTTCCCACTGCGCAAATTGAAGG 118
Query 306 TCTTGCTCGAGCCGCCAAGGATATGCAAGATATGAGAGAGGGTTATGATAGATTACTCGA 365
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||
Sbjct 119 TCTTGCTCGAGCCGCCAAGGATATGCAAGACATGAGAGAGGGTTATGATCGATTACTTGA 178
Query 366 AGTAGCTGCTGCTATGGCTAATAGCGCATATGAGTTCTCTGAATCATTGGGGGAAATGGG 425
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 179 AGTAGCTGCTGCGATGGCTAATAGCGCATACGAGTTCTCTGAATCATTGGGGGAAATGGG 238
Query 426 CTCATGCTTGGAGCAAATCGCGCCTCATAATGATCAAGAAAGTGGTGGAATTCTTCTAAT 485
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TTCATGCTTGGAGCAAATCGCGCCTCATAATGATCAAGAAAGTGGTGGAATTCTTCTAAT 298
Query 486 GTTAGGTAAAGTTCAGTTTGAGCTTAAGAAACTCGTCGACACTTATCGTTCTCAAATATT 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 GTTAGGTAAAGTTCAGTTTGAGCTTAAGAAACTCGTCGACACTTATCGTTCTCAAATATT 358
Query 546 CAAGACCATTACACGACCTTCAGAGTCACTTCTCAGTGACCTTAGAACTGTTGAGGATAT 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CAAGACCATTACACGACCTTCAGAGTCACTTCTCAGTGACCTTAGAACTGTTGAGGATAT 418
Query 606 GAAGCAACAATGTGAAGAAAAGAGAGACGTTGTTAAGCACATGCTAATGGAGCATGTGAA 665
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 419 GAAGCAACAATGTGAAGAAAAGAGAGACGTTGTTAAGCACATGATAATGGAGCATGTGAA 478
Query 666 AGACAAGGTACAAGTTAAAGGCACTAAAGGGGAGAGACTTATTCGCCGTCAGCTAGAGAC 725
||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 479 AGACAAGGTACAAATTAAAGGCAGTAAAGGGGAGAGACTTATTCGCCGTCAGTTAGAGAC 538
Query 726 TGCTCGCGATGAGCTACAAGATGAGGCGACTCTGTGCATTTTCCGATTGAAATCTCTCAA 785
|||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 539 TGCTCGTGATGAGCTACAAGATGAGGCTACTTTGTGCATTTTCCGATTGAAATCTCTCAA 598
Query 786 GGAAGGGCAAGCTCGAAGTCTCCTCACACAAGCAGCCCGCCACCACACTGCTCAGATGCA 845
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GGAAGGACAAGCTCGAAGTCTCCTCACACAAGCAGCCCGCCACCACACTGCTCAGATGCA 658
Query 846 TATGTTCTTTGCTGGTCTGAAATCGCTTGAGGCAGTAGAGCAACACGTCAGAATTGCTGC 905
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 659 TATGTTCTTTGCTGGTCTGAAATCGCTTGAGGCAGTAGAGCAACAAGTCAAAATTGCTGC 718
Query 906 AGATAGACAACACATCGACTGTGTGCTCTCTGATCCCGGGAACGAAATGGATTGTAGTGA 965
|| ||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||
Sbjct 719 AGGCAGACAACACATCGACTGTGAGCTCTCTGATCATGGGAACGAAATGGATTGCAGTGA 778
Query 966 GGATAATGATGATGATGACCGACTTGTTAATAGAGATGGAGAACTCAGTTTTGACTACAT 1025
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 779 GGATAATGATGATGATGACCGACTTGTTAACAGAGATGGAGAACTCAGTTTTGACTACAT 838
Query 1026 AACAAGTGAGCAGAGAGTAGAAGTTATATCTACACCTCATGGATCGATGAAGATGGATGA 1085
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 839 AACAAGTGAGCAGAGAGTAGAAGTTATATCTACACCACATGGATCGATGAAGATGGATGA 898
Query 1086 CACAGATCTCTCGTTTCAACGCCCTTCACCTGCAGGATCAGCAACAGTAAATGCAGACCC 1145
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 899 TACAGATCTCTCGTTTCAACGCCCTTCACCTGCAGGATCAGCAACAGTAAATGCAGATCC 958
Query 1146 TAGAGAAGAGCACTCAGTTTCAAACCGTGATCGCAGAACGAGCAGCCATTCAGCACCTCT 1205
||||||||||||| || |||||||||| |||||||||||||||||||||||||| |||||
Sbjct 959 TAGAGAAGAGCACCCAATTTCAAACCGAGATCGCAGAACGAGCAGCCATTCAGCGCCTCT 1018
Query 1206 GTTTCCGGATAAGAAAGCTGATTTAGCAGATAGATCGATGAGGCAGATGACTCCATCTGC 1265
||||||||| |||||| ||||||||||||||| || ||||||||| ||||||||||||||
Sbjct 1019 GTTTCCGGAAAAGAAATCTGATTTAGCAGATAAATTGATGAGGCAAATGACTCCATCTGC 1078
Query 1266 AAATGCTTACATATTACCAACTCCCGTCGACTCAAAGTCCTCACCAATCTTCACAAAACC 1325
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1079 AAATGCTTACATATTACCAACTCCGGTCGATTCAAAGTCCTCACCAATCTTCACAAAACC 1138
Query 1326 TGTCACCCAGACAAACCACAGTGCAAACTTATGGCATTCATCTCCACTAGAACCAATAAA 1385
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1139 TGTCACCCAAACAAACCACAGTGCAAACTTATGGCATTCATCTCCACTAGAACCGATAAA 1198
Query 1386 AACCGCCCATAAAGATGCGGAAAGCAACCTCTATTCCCGTCTTCCCCGTCCTTCAGAACA 1445
||| || | |||||||| |||||| |||| |||||||||||||||||||||||||||||
Sbjct 1199 AACTGCTCGTAAAGATGTGGAAAGTAACCAATATTCCCGTCTTCCCCGTCCTTCAGAACA 1258
Query 1446 CGCATTTTCTGGACCACTCAAGCCATCCTCAACCCGTCTTCCAGTACCAGTTGCAGTTCA 1505
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1259 TGCATTCTCTGGACCACTCAAGCCATCCTCAACCCGTCTTCCAGTACCGGTTGCAGTTCA 1318
Query 1506 GGCTCAGTCATCTTCTCCCAGAATATCTCCTACCGCTTCACCGCCTCTTGCTTCTTCCCC 1565
|||||||||||||||||| ||||| ||||||||||||||||| || ||||||||||| ||
Sbjct 1319 GGCTCAGTCATCTTCTCCAAGAATCTCTCCTACCGCTTCACCTCCGCTTGCTTCTTCTCC 1378
Query 1566 ACGAATCAACGAACTCCATGAGCTTCCAAGACCACCAGGTCAATTTGCACCGCCACGACG 1625
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1379 ACGGATCAACGAACTCCATGAGCTTCCAAGACCACCGGGTCAATTTGCACCGCCACGACG 1438
Query 1626 CTCGAAATCTCCTGGTTTGGTTGGTCATTCGGCTCCATTAACGGCTTGGAATCAAGAAAG 1685
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1439 CTCGAAATCTCCTGGTTTGGTCGGTCATTCGGCTCCATTAACGGCTTGGAATCAAGAAAG 1498
Query 1686 AAGCAATGTAGTAGTGTCAACCAACATTGTAGCATCACCACTTCCGGTTCCACCGCTTGT 1745
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 AAGCAATGTAGTTGTGTCAACCAACATTGTAGCATCACCACTTCCGGTTCCACCGCTTGT 1558
Query 1746 TGTACCGAGAAGCTACTCGATACCTTCTAGAAACCAGAGAGCAATGGCCCAACAACCCTT 1805
|||||||||||||||||| ||||| |||||||| |||||||| ||||| |||||||| ||
Sbjct 1559 TGTACCGAGAAGCTACTCTATACCGTCTAGAAATCAGAGAGCCATGGCTCAACAACCGTT 1618
Query 1806 GCCCGAGAGGAACCAAAACAGAGTAGCCTCTCCACCGCCTCTTCCGCTGACTCCAGCGTC 1865
|||||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||||
Sbjct 1619 GCCCGAGAGGAACCAAAACAGAGTCGCCTCTCCACCACCTCTGCCGCTAACTCCAGCGTC 1678
Query 1866 TCTGATGAATCTCAGATCGCTGTCTCGGTCTCATGTCGGGGAAGTTGCTCAGAGCGGACT 1925
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1679 TCTGATGAATCTCAGATCGCTGTCTCGGTCTCAAGTCGGGGAAGTTGCTCAGAGCGGACT 1738
Query 1926 AATTAGAGGTAACGGAAACAAAACTAACTTACTGT-ATTTGTAACATATCTTTAATCATC 1984
||||||||||||||||||||||||||||||||||| ||| ||||| |||||| |||||||
Sbjct 1739 AATTAGAGGTAACGGAAACAAAACTAACTTACTGTTATT-GTAACTTATCTT-AATCATC 1796
Query 1985 AATGAT 1990
||||||
Sbjct 1797 AATGAT 1802
> Ahg484476 jgi|Araly1|484476|fgenesh2_kg.5__468__AT3G26910.2
Length=2248
Score = 547 bits (296), Expect = 1e-154
Identities = 936/1232 (76%), Gaps = 96/1232 (8%)
Strand=Plus/Plus
Query 210 GATGAAAGCTTCGTTTG-GAAGGTTAAGAAGA-T----TCGCATTACCCA-AA-GCCGAT 261
||||||||||||| ||| ||| |||||| ||| | ||||||| | || || | |||
Sbjct 221 GATGAAAGCTTCGATTGAGAA-GTTAAGGAGATTAACATCGCATT-CACATAAGGTTGAT 278
Query 262 GCGATTGATATAGGAGAGCTTTTTCCCACTGCACAAATTGAAGGTCTTGCTCGAGCCGCC 321
| || || | ||||||| | | | || |||||||||| | || | ||||||||
Sbjct 279 GTGAAGGAGAAAGGAGAGGTCATGGCTACAACACAAATTGACGAACTCGATCGAGCCGGG 338
Query 322 AAGGATATGCAAGATATGAGAGAGGGTTATGATAGATTACTCGAAGTAGCTGCTGCTATG 381
||||||||||||||||||||||| | || |||||| ||||| | ||||||||| | |
Sbjct 339 AAGGATATGCAAGATATGAGAGACTGCTACGATAGACTACTCTCCGCAGCTGCTGCCACG 398
Query 382 GCTAATAGCGCATATGAGTTCTCTGAATCATTGGGGGAAATGGGCTCATGCTTGGAGCAA 441
||||||||||| |||||||||||||| || ||||| |||||||| || || |||||||||
Sbjct 399 GCTAATAGCGCTTATGAGTTCTCTGAGTCTTTGGGAGAAATGGGTTCTTGTTTGGAGCAA 458
Query 442 ATCGCGCCTCATAATGATC-AAGAAAGTGGTGGAATTCTT-CTAATGTTAGGTAAAGTTC 499
|||||||||||||| || | ||||||| || ||| |||| | ||||| ||||||||||
Sbjct 459 ATCGCGCCTCATAACGA-CGAAGAAAGCAGTAGAA-TCTTGTTTATGTTGGGTAAAGTTC 516
Query 500 AGTTTGAGCTT-AAGAAAC-TCGTCGACACTTATCGTTCTCAAATATTCAAGACCATTAC 557
|| ||||||| || | || || | ||||| |||||| ||| |||||||| ||||||||
Sbjct 517 AGAGTGAGCTTCAA-AGACTTC-TTGACACATATCGTAGTCATATATTCAAAACCATTAC 574
Query 558 A-CGACCTTCAGAGTCACTTCTC-AGTGACCTTAGAACTGTTGAGGATATGAAGCAACAA 615
| | || |||||| | |||||| || ||||| |||||||||||||||||||||||||||
Sbjct 575 ATC-CCCATCAGAGGCGCTTCTCAAG-GACCTCAGAACTGTTGAGGATATGAAGCAACAA 632
Query 616 TGTGAAGAAAAGAGAGAC-GTTGTTAAGCACATGCTAATGGAGCATGTGAAAGACAA-GG 673
|| || || ||||| || || || | | | ||| | | | || ||||| || ||
Sbjct 633 TGCGACGAGAAGAG-GAATGT-GT-ATG-AGATG-TC--GCT--A-GTAAAAGATAAAGG 682
Query 674 TACAAG-TTAAAGGCACTAAAGGGGAGAGACTTATTCG-CC-GTCAG-CTAGAGACTGCT 729
| | | ||||| ||| |||||| ||||| | ||||| || | || || || |||||
Sbjct 683 -A-AGGCTTAAAAGCAGTAAAGGAGAGAGGCATATTCCTCCCG--AGTCTCGAC-CTGCT 737
Query 730 CGC-GATGAGCTACAAGATGAGGCGACTCTGTGCATTTTCCGATTGAAATCTCTCAAGGA 788
| | |||| | || || || || || |||||||||| |||||||||||||| || ||
Sbjct 738 TACAG-TGAGTTTCATGACGAAGCAACAATGTGCATTTTTCGATTGAAATCTCTTAAAGA 796
Query 789 AGGGCAAGCTCGAAGTCTCCTCACACAAGCAGCCCGCCACCACACTGCTCAGATGCATAT 848
||| |||||||| |||||||| |||||||||| ||| ||||||||||||||||||| | |
Sbjct 797 AGGACAAGCTCGTAGTCTCCTTACACAAGCAGTCCGTCACCACACTGCTCAGATGCGTTT 856
Query 849 GTTCTTTGCTGGTCTGAAATCGCTTGAGGCAGTAGAGCAACACGTCAGAA-TTGCTGCAG 907
|||| |||| |||||||| || |||||||| |||| || || | || |||||||||
Sbjct 857 GTTCCACACTGGACTGAAATCTCTCGAGGCAGTTGAGCGTCATGTAA-AAGTTGCTGCAG 915
Query 908 ATAGACAACACATCGACTGTG-TGCTCTCTGATCCCGGGAACGAAATGGATTG-TAGTGA 965
| | ||||||||| ||||||| | || |||| || |||||||| |||| | ||| ||
Sbjct 916 AGAAACAACACATTGACTGTGAT-CTATCTGTTCATGGGAACGAGGTGGAA-GCTAGCGA 973
Query 966 GGATAATGATGATGATGA---CCGACT-TGTTAATAGAGATGGAGAACTCAGTTTTGACT 1021
| || ||||||||||||| |||| | | | || ||||| ||||||||||||||||| |
Sbjct 974 GTATGATGATGATGATGATAGCCGA-TATATGAACAGAGAAGGAGAACTCAGTTTTGATT 1032
Query 1022 ACATAACAAGTGAGCAGAGA-GTAGAAG-T--TA-TATCT--ACACCTCATGGATCGATG 1074
||| ||||| ||| |||| | ||||||| | | | ||| ||||| |||| | |
Sbjct 1033 ACAGAACAAATGACCAGA-ATGTAGAAGCTGCTTCTCTCTCTACACC--ATGGGGC--TC 1087
Query 1075 AA-GATGGATGACACAGATCTCTCGTTTCAACGCCCTTC-ACCTGCAGGATCAGCAACAG 1132
|| ||||||||| ||||| |||||||||| |||||||| || || || ||||| | |
Sbjct 1088 AAAGATGGATGATACAGACCTCTCGTTTCCTCGCCCTTCTACAA-CACGACCAGCAGCGG 1146
Query 1133 TAAATGCAGACCCTAGAGAAGAGCACTC-AGTTTCAAACCGTGATC-GCAGAACGAGCAG 1190
||||||| || | ||||||||| | || |||||||| ||| ||| | | ||||||
Sbjct 1147 TAAATGCTGATCATAGAGAAGAATA-TCCAGTTTCAACCCGCGATAAGTATTT-GAGCAG 1204
Query 1191 CCATTCAGCACC-TCTGTTTCCGGATAAGAAAGCTGATTTAGCAGATAGATCGATGA--G 1247
||||||||| || | |||| || || |||||| |||||||| |||| || | || || |
Sbjct 1205 CCATTCAGCTCCGT-TGTTCCCAGAAAAGAAACCTGATTTATCAGAGAGGTTGA-GACAG 1262
Query 1248 GCAGATGACTCCATCTGCAAATGCTTACATATTACCAACTCCCGTCGACTCAAAGTCCTC 1307
| | ||| ||||||| ||||| ||| |||||||||| || ||| |||| || |||
Sbjct 1263 GTGG-TGAATCCATCTTTTAATGCCTACGTATTACCAACACCAAACGATTCAAGGTACTC 1321
Query 1308 -A--CCAATCTTCACAAAACCTG---TC--AC-CCAGACAAACCACAGTGC---AAACTT 1355
| || | ||| ||| | | || | |||| ||||||||||||| |||| |
Sbjct 1322 GAAACCGGT-TTCCCAAG-CTTTAAATCCGAGGCCAG-CAAACCACAGTGCTGGAAACAT 1378
Query 1356 ATGGCATTCATCTCCACTAGAACCAATAAAAA 1387
||||||||||||||| |||| || |||||||
Sbjct 1379 ATGGCATTCATCTCCGTTAGAGCCGATAAAAA 1410
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84293712185
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5