BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41110.1
Length=2470
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493865 jgi|Araly1|493865|fgenesh2_kg.7__3298__AT5G41110.1 2963 0.0
Ahg484471 jgi|Araly1|484471|fgenesh2_kg.5__463__AT3G26890.4 628 4e-179
> Ahg493865 jgi|Araly1|493865|fgenesh2_kg.7__3298__AT5G41110.1
Length=1867
Score = 2963 bits (1604), Expect = 0.0
Identities = 1781/1868 (95%), Gaps = 5/1868 (0%)
Strand=Plus/Plus
Query 605 ATGGGTCTGCCACACACTGCTTCAAATGAGCAAGCCCATGAAGCTTTGTCTGCTCCAAGT 664
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 ATGGGTCTGCCACACACTGCTTCAAATGAGCAACCCCATGAAGCTTTGTCTGCTCCAAGT 60
Query 665 TGCAGCCTTTCTCAAAGTCTGCCAGTAAATGCCACTTCCTGTGATTCAGACGGTATTAAC 724
||||| ||||||||||||||||| |||||||||||||| ||||||||||| |||||||||
Sbjct 61 TGCAGTCTTTCTCAAAGTCTGCCTGTAAATGCCACTTCTTGTGATTCAGATGGTATTAAC 120
Query 725 AGAGGGAACGAAGGAAGTTTCCGCTTCTCTATTGGAGAGTCTGATAGGAAAACAGCAGTG 784
|||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||
Sbjct 121 AGAGGGAACGAAGGAAGTTTCCGCTTCTCTATTGGAGAATCTGATAGGCAAACAACAGTG 180
Query 785 GAATCGTTGGAGTTTAGAGATGACTTATGGAGATTCCATGACACTCGGTCTGTTACCTCA 844
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 181 GAATCTTTGGAGTTTAGAGATGACTTATGGAGATTCCATGACACTCTGTCTGTTACCTCA 240
Query 845 TTACCTGCTCACGAACCGACTTATGCAATGGATAAGGTAAATTTGAGTCGAACTGAAGTT 904
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTACCTGCTCACGAACCGCCTTATGCAATGGATAAGGTAAATTTGAGTCGAACTGAAGTT 300
Query 905 AGAAGGATAGTTGGTTTCGAATCAAATGAAGT-TAGCTCAGTGAGTAATGAATACACAAG 963
||||||||||||||||||||||| |||||| | ||||||| ||||||||||||||| ||
Sbjct 301 AGAAGGATAGTTGGTTTCGAATCGAATGAA-TCTAGCTCACCGAGTAATGAATACACGAG 359
Query 964 TATTACTGTTAATCGCACTGGTGGATCTAATGAGGTAGATATTATCGGTGGATCGTTAGT 1023
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TATCACTGTTAATCGCACTGGTGGATCTAATGAGGTAGATATTATCGGTGGATCGTTAGT 419
Query 1024 CAGGAAACGGGTAAGCTCTCCTCTGAATAAGCTTTTCCCTGAGAAATTTAGAGGCGACTC 1083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CAGGAAACGGGTAAGCTCTCCTCTGAATAAGCTTTTCCCTGAGAAATTTAGAGGCGACTC 479
Query 1084 GCTTGATATCAGCCATAGCAACCAACCGATGACTTCTGCTGGTCTTCCTAAAGGATTTCA 1143
||||||||||||| |||||||||| | || ||||||||||| ||||||| ||||||||
Sbjct 480 ACTTGATATCAGCCGTAGCAACCAAGAGTTGGCTTCTGCTGGTATTCCTAATGGATTTCA 539
Query 1144 CATTCCTGTTGGACAAGATCATAAAAAAGCCAATATCTCTGGGAGATTGCGTCTCTTCAC 1203
||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||| ||
Sbjct 540 CATTCCTGTTGCACAAGATCATAAAAAGGCCAATATCTCTGGGAGATTACGTCTCTTTAC 599
Query 1204 CACTTCTAACTGCTCTGAATGGGGGAATGACACATCACACACGGGTAAACTTTCATCGAC 1263
|||||||| || ||||||||||||||||||| | ||||||||||||||||||||||| ||
Sbjct 600 CACTTCTACCTTCTCTGAATGGGGGAATGACTCGTCACACACGGGTAAACTTTCATCTAC 659
Query 1264 TGTTTTCACGGATGGTCCATTGCTTGACTCTAACGATCTGCAGCCTAGTCAAGATGTACA 1323
|||||||||||||||||||||||||||| | || ||||||||||| | ||||||||||
Sbjct 660 TGTTTTCACGGATGGTCCATTGCTTGACGCCAATGATCTGCAGCCCACAAAAGATGTACA 719
Query 1324 TTGCTTATATTCACCAGTACATGAAACATTTCAAGTACCTAATAAGCCATTACCATGTCA 1383
||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 720 TTGCTTATATTTACCAGTACATGAAACATTTCAAGTACCTGCTAAGCCATCACCATGTCA 779
Query 1384 TAGAAATATATCTGTCTCTCCGCCACTTTCTCTGTCACCTCTTGGGCCAAGATTTTCTGA 1443
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 780 TAGAAACATATCTGTCTCTCCGCCACTTTCTCTGTCACCTCTTGGGCCAAGATTCCCCGA 839
Query 1444 GAGGATGAAAGCTCTTCAAGGGGGCCTAAATGGGAATATTTTCGAAGATGATGTTTGTTT 1503
||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 840 GAGAATGAAAGCTCTTCAAGGGGGCCTAAATGGGAATATCTTCGAAGATGGCGTTTGTTT 899
Query 1504 AAAGAATACTGGTGAAGAAGCAGAACTCAGGACTGGTCACAGATCGTTTGATGATACTAA 1563
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 900 AAAGAATACTGGTGAAGAAGCAGAACTCAGGACTGGTCATAGATTGTTTGATGATACTAA 959
Query 1564 TGGTATCCAGAGAGCCTTTTCAATGGATAGAGCTATTGAATCAGTTCCTACATCTCCATG 1623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TGGTATCCAGAGAGCCTTTTCAATGGATAGAGCTATTGAATCAGTTCCTACATCTCCATG 1019
Query 1624 TAAAAGGTTTAGTAGAAGCTTGAGTGGACGTCCCATTCAAAGGTCATTGGTTGGTTCTTT 1683
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1020 TAAAAGATTTAGTAGAAGCTTGAGTGGACGTCCCATTCAAAGGTCATTGGTTGGTTCGTT 1079
Query 1684 TGAAGAGTCCCTCTTTTCAGGAAGATTATCTTATGGGCAAGCTAATCAGAAGATCGACGG 1743
|||||| ||||||||||||||||||||||| | ||||||||||||||||||||| |||||
Sbjct 1080 TGAAGAATCCCTCTTTTCAGGAAGATTATCCTCTGGGCAAGCTAATCAGAAGATTGACGG 1139
Query 1744 TTTTCTTGCCATTCTTAGTATAGCTGGTGGAAACATCTCTCCAAAATCACAGAAGCTTCC 1803
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1140 TTTTCTTGCCATTCTTAGTATTGCTGGCGGAAACATCTCTCCAAAATCACAGAAGCTTCC 1199
Query 1804 ATTCTCAGTAACAAGTGTTGGTGATGATTGCTTCTTACTATACTATGCCTCCATAGATCT 1863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 ATTCTCAGTAACAAGTGTTGGTGATGATTGCTTCTTACTATACTATGCCTCCATAGATCT 1259
Query 1864 CTCTGGAGGATCATTGCCAAGCAAATTATGGGGTCAGAAATTGAAAACCAACCAAAACAA 1923
|||| |||||||||||||| |||||| |||||||||||| |||||||||||||||||||
Sbjct 1260 CTCTAAAGGATCATTGCCAAACAAATTGTGGGGTCAGAAACTGAAAACCAACCAAAACAA 1319
Query 1924 GTCTGATGCTCAGACCAT--T-AATAAACGTCTTCGGATTCCTATGAAGGGTCGGATCCA 1980
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1320 GTCTGATGCTCAGACCATCATTAATAAACGTCTTCGGATTCCTATGAAGGGTCGGATCCA 1379
Query 1981 ACTGGTTCTGAGTAACCCTGAAAAGACACCTCTACACACTTTCCTTTGTAACTATGACTT 2040
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1380 ACTGGTTCTGAGTAACCCTGAAAAGACACCTCTTCACACTTTCCTCTGTAACTATGACTT 1439
Query 2041 AACTGATATGCCACACGGTACAAAGACCTTCCTGCGCCAAAAGGTTACTCTGGCCTCCTC 2100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 AACTGATATGCCACACGGTACAAAGACCTTCCTGCGCCAAAAGGTTACTCTGGCCTCCTC 1499
Query 2101 TGTTCCGACCAAAGCCAAAAAATCTGCAAATAAAGGTAGTGAAGGATCCGAGTTAGTGGA 2160
||||| |||||||||||||||||||||||||||| ||||||||||||| || | ||||||
Sbjct 1500 TGTTCGGACCAAAGCCAAAAAATCTGCAAATAAAAGTAGTGAAGGATCTGAATCAGTGGA 1559
Query 2161 TGAATTGCATTCGCCGAATGAGTGTGGGAACAAGAATTGTCGTGAGACGTACAGAGAAAC 2220
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1560 TGAATTGCATTCACCGAATGAGTGTAGGAACAAGAATTGTCGTGAGACGTACAGAGAAAC 1619
Query 2221 AGGACAACGCTGTTCAAAGTCTGGAGTCTTACGCTACGCACTTCATCTTAAATTTATTTG 2280
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1620 AGGACAACGCTGTTCAAAGTCTGGAGTCTTACGCTACGCGCTTCATCTTAAATTTATTTG 1679
Query 2281 CCCTTTACGCAAGAAAGCCTCCAAATTAGGTCAGAAGAAAAGCTTGGATGCAGGAGATGA 2340
||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
Sbjct 1680 CCCTTTACGCAAGAAAGCCTCAAAATTAGGTCAGAAGAAAAGCTTGGATGCAGCAGATAA 1739
Query 2341 TGGAGAGCGGAGATTCTATTTATATAATGAATTGAGAGTTGTGTTTCCTCAACGCCACAC 2400
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1740 TGGAGAGAGGAGATTCTATTTATATAATGACTTGAGAGTTGTGTTTCCTCAACGCCACAC 1799
Query 2401 AGATTCTGATGAAGGAAAGTTGAATGTGGAGTATCATTACCCAGAAAATCCAAGATACTT 2460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1800 AGATTCTGATGAAGGAAAGTTGAATGTGGAGTATCATTACCCAGAAAATCCAAGATACTT 1859
Query 2461 CGACGTGT 2468
||||||||
Sbjct 1860 CGACGTGT 1867
> Ahg484471 jgi|Araly1|484471|fgenesh2_kg.5__463__AT3G26890.4
Length=2440
Score = 628 bits (340), Expect = 4e-179
Identities = 916/1177 (78%), Gaps = 108/1177 (9%)
Strand=Plus/Plus
Query 975 ATCGCACTGGTGGA-TCTA-ATGAGGTAGATATTATCGGTGGATCGTTAGTCAGGAAACG 1032
||| |||||||||| | || | || ||||||| | | |||||| ||||||||||||||||
Sbjct 705 ATC-CACTGGTGGAGT-TACAGGA-GTAGATA-T-T-GGTGGAGCGTTAGTCAGGAAACG 758
Query 1033 GGTAAGCTCTCCTC--TGAATAAGCTTTTCCCTG-AGAAATTTAGAGGCGA-CTCGCTTG 1088
|| | |||||| | |||||| |||||||||| | ||||| ||||| || || ||||
Sbjct 759 AGT-A-CTCTCCCCGTTGAATACTCTTTTCCCTGTA-AAATTCAGAGGTGACCT-TCTTG 814
Query 1089 ATATCAGCCATAGCAA-C--CAACCGATGACTTCTGCTGGTC-TTCCTAAAGGATT-T-C 1142
|||||||| | | || | |||| || |||| | |||||| | |||| ||||| | |
Sbjct 815 ATATCAGCTGTGGTAACCATCAACAAATTACTTATTCTGGTCAGT-CTAATGGATTCTGC 873
Query 1143 ACATTCCTGTTGGACAAGATCATAAAAAAGCCAATATCTCTGGGAGATTGCGT--CTCT- 1199
| | | |||| | ||||||||| || || || |||| | || | || || | | ||||
Sbjct 874 A-AGT-CTGTCGCACAAGATCACAATAAGGCTAATACCCCTAGTAGGTTACATCCCTCTA 931
Query 1200 TCA--CC-ACT-TC-TAACTGC-TCTGA-ATG-GGGGAAT-G-A-CA--CATCACACACG 1246
|| || ||| | ||| | ||| | || |||| | | | | | ||| ||| |
Sbjct 932 CCACTCCTACTACCACAACCACATCT-AGTTGCTGGGAGTGGAAGAATGCCTCAAACA-G 989
Query 1247 -GGTAAACTTTCATCGACT-GTTTTCACGGATGGTCCATTGCTTGACTCT-AACGATCT- 1302
|||| ||| || || | | || ||||| ||||||||||||||||||||| | |||||
Sbjct 990 TGGTAGACTCTCGTCCA-TGGTCTTCACTGATGGTCCATTGCTTGACTCTGTA-GATCTC 1047
Query 1303 -GCAG-CCTAGTC-AAGATGTA-CATTGCTTATATTCACCAGTACATGAAACATTTCAAG 1358
|| | || | || ||| || | |||||||||||| ||| |||||||||| || ||
Sbjct 1048 CGCCGACCCA-TCAAAGGTG-AGGTTTGCTTATATTCCCCACTACATGAAAC--GTCTAG 1103
Query 1359 --TACCTAATAAGCCATTACCATGTCAT-AGAAATATATCTGTCTCTCCGCCACTTTCTC 1415
|||| |||||||| ||||| ||| || || || |||||||| ||||| || || | ||
Sbjct 1104 CATACCCAATAAGCCCTTACCTTGTGATAAGGAA-ATATCTGTGTCTCCACCGCTGTGTC 1162
Query 1416 TGTCACCTCTTGGGCC-AAGATTTTCTGAGAGGATGAAAGCTCTTCAAG--GGGGCCTAA 1472
||||||| ||||| || ||| ||||||||||| || ||| || | ||| | ||| ||
Sbjct 1163 TGTCACCACTTGGTCCGAAG-TTTTCTGAGAGAATAAAAACT-GT-AAGAAGTTGCCAAA 1219
Query 1473 ATGGGAATATTTTCGAAGATGATGTTTGTTTAAAGAATACT-GGTGAAGAAGCAGAACTC 1531
||||||| || | | || | | ||||| ||||| | |||||||||||||| |
Sbjct 1220 ATGGGAAGATACT-G--GA--A-G---ATTTAAGGAATA-TCAGTGAAGAAGCAGAA-TT 1268
Query 1532 AGGACT-GGTCACAGATCGTTTGATGATACTA-ATGGTATCCA-GAGAGCCTTTTCAATG 1588
| || | | || |||| |||||||||| | | ||| || | |||||| |||||||||
Sbjct 1269 AAGAGTCGATCGTAGATTGTTTGATGATGC-ATATGCCAT-TAGGAGAGCATTTTCAATG 1326
Query 1589 GATAG-AGCTATTGAATCAGTTCCTACATCTCCATGTAAAAGGTTTAGTAGAAGCTTGAG 1647
|| || || || |||||||| |||| ||||||||||||| ||||| | ||||||||||||
Sbjct 1327 GAGAGAAG-TACTGAATCAGCTCCTGCATCTCCATGTAAGAGGTTCATTAGAAGCTTGAG 1385
Query 1648 TGGACGTCCCATTCAAAGGTCATTGGTTGGTTCTTTTGAAGAGTCCCTCTTTTCAGGAAG 1707
|||||| |||||||| ||||||||||||||||||||||| ||||| ||||| ||||| |
Sbjct 1386 TGGACGCCCCATTCAGAGGTCATTGGTTGGTTCTTTTGAGGAGTCACTCTTGACAGGACG 1445
Query 1708 ATTATCTTATGGG-CAAGCTAATCAGAAGATCGACGGTTTTCTTGCCATTCTTAGTATAG 1766
||| || | ||| ||| | ||||||||||| ||||| || |||||| |||||||||| |
Sbjct 1446 ATTGTCATGCGGGCCAA-CAAATCAGAAGATTGACGGCTTCCTTGCCGTTCTTAGTATTG 1504
Query 1767 CTGGTGGAAACATCTCTCCAAAATCACAGAAGCTTCCATTCTCAGTAACAAGTGTTGGTG 1826
|||| || ||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 1505 CTGGGGGGAACATCTCTCCAAAATCACAGAAGCTTCCATTCTCAGTAACTAGTGCTGGTG 1564
Query 1827 ATGATTGC-TTCTTACTATACTATGCCTCCATAGATCTCTCTGGAGGATC-A--TTGCCA 1882
|||||| | || || |||||||||||||||||||||||| | |||||||| | ||| |
Sbjct 1565 ATGATTCCCTT-TTGCTATACTATGCCTCCATAGATCTCGCCGGAGGATCTAAATTG--A 1621
Query 1883 AGCAAATTATGGGGTCAGAAATTGAAAACCAAC-CAAAACAAGTCTGATGCTCAGACCAT 1941
| |||||| ||||| |||||| ||||||| || |||| || ||||||||||||| |
Sbjct 1622 A-CAAATTCTGGGGCCAGAAAATGAAAAC-AAGTCAAATGAACTCTGATGCTCAGAG--T 1677
Query 1942 TA-ATAAA-CGT-CTTCGGATTCCTATGAAGGGTCGGATCCAACTGGTTCTGAGTAACCC 1998
| | ||| | || ||||| || |||||||||||||| ||||||||||| ||||||||
Sbjct 1678 TCGA-AAAGCCAACTGCGGATCCCCATGAAGGGTCGGATTCAACTGGTTCTTAGTAACCC 1736
Query 1999 TGA-AAAGACACCTCTACACACTTTCCTTTGTAACTATGACTTAACTGATATGCCA-CAC 2056
||| ||| |||||||| ||||| ||||| |||||||||||||| |||||||||||| | |
Sbjct 1737 TGAGAAA-ACACCTCTTCACACCTTCCTCTGTAACTATGACTTGACTGATATGCCAGC-C 1794
Query 2057 GGTACAAAGACCTTCCTGCGCCAAAAGGTTACTCTGG 2093
||||||||||| ||| ||||||| |||||||||||||
Sbjct 1795 GGTACAAAGACGTTCTTGCGCCAGAAGGTTACTCTGG 1831
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93092558780
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5