BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41120.1
Length=2218
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493863 jgi|Araly1|493863|fgenesh2_kg.7__3296__AT5G41120.1 3273 0.0
Ahg493862 jgi|Araly1|493862|fgenesh2_kg.7__3295__AT5G41130.1 2252 0.0
Ahg484460 jgi|Araly1|484460|fgenesh2_kg.5__452__AT3G26840.1 625 5e-178
> Ahg493863 jgi|Araly1|493863|fgenesh2_kg.7__3296__AT5G41120.1
Length=2179
Score = 3273 bits (1772), Expect = 0.0
Identities = 2020/2139 (94%), Gaps = 20/2139 (1%)
Strand=Plus/Plus
Query 71 TCACTGATGGAACCTCTCCCACCTTCTTCTCCTCAGCTTCGACAAAG-GCTTATAATCTC 129
|||||||||||| |||||| | | |||||||||||||||||| ||| |||| |||||||
Sbjct 53 TCACTGATGGAATCTCTCCTA-C--CTTCTCCTCAGCTTCGAC-AAGAGCTTCTAATCTC 108
Query 130 CATTTTCT-CTACTCGAATTCAACCCAACGACTTACGAATCC-GAAATTCGGAATCGGCG 187
|||||| | || || |||||||||||||||||||||| | || |||||| ||||||| |
Sbjct 109 CATTTT-TGCTTCTGGAATTCAACCCAACGACTTACG-AGCCGGAAATTTGGAATCGATG 166
Query 188 GGAAGTTGAAGGTGACGGTGAATCCGTATTCGTATACAGAGGAAGTACGGCCTGAGGAAC 247
||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 167 TGAAGTTGAAGGCGACGGTGAATCCGTATTCGTATACGGAGGAAGTACGGCCTGAGGAAC 226
Query 248 GGAAGAGTTTGACGGATTTTTTAACGGAAGCTGGAGATTTCGTTA-ATTCAGACGGCGGA 306
||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||
Sbjct 227 GGAAGAGTTTGACGGATTTTTTAGTGGAAGCTGGAGATTTCGTTAGA-TCAGACGGCGGA 285
Query 307 GATGGTGGTCCGCCACGGTGGTTCTCACCGTTGGAATGTGGCGCACGTGCTCCTGAATCT 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 286 GATGGTGGTCCGCCACGGTGGTTCTCACCGTTGGAATGTGGCGCACGTGCTCCTGGATCT 345
Query 367 CCTCTTCTTCTCTACTTACCTGGGATCGATGGAACTGGATTAGGGCTCATTCGCCAGCAT 426
|||||||||||||||||||||||||| ||||| |||||||||||||||||||| || |||
Sbjct 346 CCTCTTCTTCTCTACTTACCTGGGATTGATGGTACTGGATTAGGGCTCATTCGTCAACAT 405
Query 427 AAGAGGCTTGGAGAGATATTTGACATATGGTGCCTTCACTTTCCAGTAAAAGATCGTACT 486
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 406 AAGAGGCTTGGAGAGATATTTGACATATGGTGCCTTCACTTTCCGGTGAAAGATCGTACT 465
Query 487 CCTGCTCGAGATATTGGGAAGCTCATTGAGAAGACAGTTAGGTCAGAGCACTACCGTTTC 546
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 466 CCTGCTCGAGATCTTGTGAAGCTCATTGAGAAGACAGTTAGGTCAGAGCACTACCATTTC 525
Query 547 CCAAATAGACCCATTTATATAGTTGGAGAATCTATTGGAGCTTCTCTTGCTCTGGATGTT 606
||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 526 CCAAATAGACCAATATATATAGTTGGAGAATCTATTGGAGCTTCTCTTGCTCTAGATGTT 585
Query 607 GCAGCCAGTAACCCTGACATTGATCTTGTCTTGATTCTGGCTAATCCAGTCACACGTTTT 666
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 586 GCAGCCAGTAACCCTGATATTGATCTTGTCTTGATTCTGGCTAATCCAGTCACACGTTTC 645
Query 667 ACCAACTTAATGTTGCAACCTGTATTGGCCCTACTGGAAATTTTGCCTGACGGAGTTCCC 726
| |||||| |||||||||||| |||||| ||||||||||||||||||||||| |||||||
Sbjct 646 AACAACTTCATGTTGCAACCTTTATTGGGCCTACTGGAAATTTTGCCTGACGAAGTTCCC 705
Query 727 GGCTTGATAACAGAGAATTTTGGGTTTTACCAAGAAATGTTCGAGACTATGCTCAATGAA 786
||||||||||||||||||| | |||| ||||||| ||||||||||||||||||||||||
Sbjct 706 AGCTTGATAACAGAGAATTTCGTGTTTAACCAAGAGATGTTCGAGACTATGCTCAATGAA 765
Query 787 AATGATGCCGCGCAGATGGGTAGAGGGCTATTAGGAGACTTCTTTGCAACTTCATCTAAT 846
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 766 ACTGATGCCGCGCAGATGGGTAGAGGGCTATTAGGAGACTTCTTTGCAACTTCATCTAAT 825
Query 847 CTGCCTACTCTGATTAGAATCTTTCCCAAGGACACACTTCTATGGAAGCTTCAATTGCTT 906
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 826 CTGCCTACTCTGATTAGAATCTTTCCCAAGGACACACTTCTATGGAAGCTTCAATTGCTA 885
Query 907 AAGTCTGCTTCAGCGTCTGCTAATTCTCAGATGGACACAGTCAACGCCCAAACACTGATA 966
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 886 AAGTCTGCATCAGCGTCTGTTAATTCTCAGATGGACACAGTCAACGCCCAAACACTGATA 945
Query 967 CTTCTGAGTGGACGTGATCAATGGTTAATGAACAAGGAAGACATTGAAAGACTCCGTGGT 1026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 946 CTTCTGAGTGGACGTGATCAATGGTTAATGAACAAGGAAGACATTGAAAGACTCCGTGGT 1005
Query 1027 GCATTGCCAAGATGTGAAGTTCGTGAGCTTGAGAATAATGGACAGTTCCTCTTCTTGGAG 1086
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 1006 GCATTGCCAAGATGTGAAGTTCGTGAGCTTGAGCATAATGGACCGTTCCTCTTCTTGGAG 1065
Query 1087 GATGGAGTAGATCTGGTGAGTATCATCAAGCGTGCGTATTATTATCGCCGTGGGAAGTCA 1146
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||
Sbjct 1066 GATGGAGTAGATCTGGTGACTATCATCAAGCGTGCCTATTATTATCGCCGTGGGATGTCA 1125
Query 1147 CTTGATTACATTTCGGATTACATTCTGCCTACCCCATTTGAGTTTAAAGAGTATGAAGAA 1206
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 1126 CTTGATTACATTTCGGATTACATTTTGCCTACCCCATTTGAGTTCAAAGAGTATGAAGAA 1185
Query 1207 TCACAAAGATTGCTAACTGCTGTTACCTCCCCAGTCTTTCTTTCAACTCTAAAGAATGGT 1266
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1186 TCACAAAGATTGCTAACTGCTGTTACCTCCCCAGTCTTTCTCTCAACTCTAAACAATGGT 1245
Query 1267 GCAGTGGTAAGATCGCTTGCAGGAATACCTTCAGAGGGACCGGTTCTGTATGTTGGCAAT 1326
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1246 GCAGTAGTAAGATCACTTGCAGGAATACCTTCAGAGGGACCGGTTCTGTATGTTGGCAAT 1305
Query 1327 CACATGTTGCTTGGTATGGAGTTGCATGCAATAGCACTTCATTTTTTGAAAGAAAGGAAC 1386
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1306 CACATGTTGCTTGGTATGGAGTTGCATGCAATAGCACTTCATTTCTTGAAAGAAAGGAAC 1365
Query 1387 ATTCTATTGCGAGGACTGGCACATCCATTGATGTTTACCaaaaaaaCTGGCTCAAAACTC 1446
||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1366 ATTCTGTTGCGAGGACTGGCACATCCATTGATGTTTACCAAAAAATTTGGCTCAAAACTC 1425
Query 1447 CCTGACATGCAGCTGTACGACTTATTTAGGATTATAGGCGCAGTTCCCGTCTCGGGAATG 1506
||||| |||||| ||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1426 CCTGATATGCAGTTGTACGACTTATTTAGGATAATAGGCGCAGTTCCTGTCTCGGGAATG 1485
Query 1507 AATTTCTACAAACTACTTCGTTCAAAGGCTCACGTGGCTTTGTACCCTGGGGGTGTTCGT 1566
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1486 AATTTTTACAAACTACTTCGTTCAAAGGCTCACGTGGCTTTGTACCCTGGAGGTGTTCGT 1545
Query 1567 GAAGCTTTGCACAGAAAGGGTGAAGAATACAAGTTATTTTGGCCAGAACATTCGGAGTTT 1626
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1546 GAAGCTTTGCATAGAAAGGGTGAAGAATACAAGTTGTTTTGGCCAGAACATTCGGAGTTT 1605
Query 1627 GTAAGGATAGCATCTAAATTTGGAGCAAAAATCATTCCTTTTGGAGTTGTTGGAGAAGAT 1686
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 1606 GTAAGGATAGCATCTAAATTTGGAGCAAAAATCATTCCTTTTGGAGCTGTTGGTGAAGAT 1665
Query 1687 GATCTTTGTGAAATGGTTTTAGATTATGATGATCAAATGAAGATCCCTTTCTTGAAGAAT 1746
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1666 GATCTCTGTGAAATGGTTTTAGATTACAATGATCAAATGAAGATCCCTTTCTTGAAGAAT 1725
Query 1747 CTTATAGAAGAGATAACACAAGACTCTGTTAACTTGAGGAACGATGAAGAAGGCGAATTG 1806
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1726 CTTATTGAAGAGATAACACAAGACTCCGTTAACTTGAGGAACGATGAAGAAGGCGAATTG 1785
Query 1807 GGAAAACAAGATTTACATCTACCTGGAATAGTTCCAAAGATCCCGGGACGGTTTTACGCA 1866
|||||||||||||| ||| | |||||||||||||| ||||| |||||||||||||||| |
Sbjct 1786 GGAAAACAAGATTTGCATGTGCCTGGAATAGTTCCCAAGATTCCGGGACGGTTTTACGTA 1845
Query 1867 TACTTTGGGAAACCAATAGACACAGAAGGTAGAGAGAAAGAGCTAAACAATAAAGAGAAA 1926
|||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||
Sbjct 1846 TACTTTGGGAAACCAATAGAAACAGAAGGTAGAGGGAAAGAGCTAAATAATAAAGAGAAA 1905
Query 1927 GCTCATGAGGTTTACTTGCAGGTCAAGTCTGAGGTAGAAAGATGTATGAACTATTTGAAA 1986
|||||||||||||||||| |||||||||||||||| ||||||||||||| |||||| |||
Sbjct 1906 GCTCATGAGGTTTACTTGGAGGTCAAGTCTGAGGTTGAAAGATGTATGACCTATTT-AAA 1964
Query 1987 -ATCAAAAGAGAAACTGATCCTTACAGAAACATTTTGCCGAGGTCCCTCTATTACCTCAC 2045
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 1965 GATGAAAAGAGAAACTGATCCTTACAGAAACATTTTGCCGAGGTCGCTCTATTACCTCTC 2024
Query 2046 TCATGGTTTCTCTTCCCAAATCCCAACCTTCGATCTCCGAAATCATTAAATTTAGTTACT 2105
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2025 TCACGGTTTCTCTTCCCAAATCCCAACCTTTGATCTCCGAAATCATTAAATTTAGTTACT 2084
Query 2106 -GTGTTGT-AGCTCTATCT-ACAAGATATCTTATTTAACTGTGGTGATTAAACACGTAGA 2162
| || | | |||| || ||| |||| |||||||||||||| |||||||||||||| |
Sbjct 2085 AGA-TTCTTAT-TCTA-CTTACAGGATACCTTATTTAACTGTG-TGATTAAACACGTAAA 2140
Query 2163 TTTGGGTGTGTTATTGTAAAAAATGGTTGGTATATATAA 2201
||||||| |||||||||||| ||| ||||||||||||||
Sbjct 2141 TTTGGGTATGTTATTGTAAACAATCGTTGGTATATATAA 2179
> Ahg493862 jgi|Araly1|493862|fgenesh2_kg.7__3295__AT5G41130.1
Length=2226
Score = 2252 bits (1219), Expect = 0.0
Identities = 1712/1949 (88%), Gaps = 37/1949 (2%)
Strand=Plus/Plus
Query 183 CGGCGGGAAGTTGAAGGTGACGGTGAATCCGTATTCGTATACAGAGGAAGTACGGCCTGA 242
||| |||||| ||| || |||||||||||||||| |||| || |||| | | ||| ||
Sbjct 172 CGGAGGGAAGGTGACGGCGACGGTGAATCCGTATACGTACACGGAGGCGGCGCAGCCAGA 231
Query 243 GGAACGGAAGAGTTTGACGGATTTTTTAACGGAAGCTGGAGATTTCGTTA-ATTCAGACG 301
|| ||||||||||||||||||||||| ||||||| |||||||| ||| | || ||||
Sbjct 232 AGAGCGGAAGAGTTTGACGGATTTTTTTGTGGAAGCTAGAGATTTCTTTAGA-TCCGACG 290
Query 302 GCGGAGATGGTGGTCCGCCACGGTGGTTCTCACCGTTGGAATGTGGCGCACGTGCTCCTG 361
||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||| |
Sbjct 291 GCGGAGATGGTGGTCCGCCTCGGTGGTTCTCTCCGTTGGAATGTGGCGCACGTTCTCCAG 350
Query 362 AATCTCCTCTTCTTCTCTACTTACCTGGGATCGATGGAACTGGATTAGGGCTCATTCGCC 421
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 351 AATCTCCTCTTCTTCTCTACTTACCTGGGATCGATGGTACTGGATTAGGGCTCATTCGTC 410
Query 422 AGCATAAGAGGCTTGGAGAGATATTTGACATATGGTGCCTTCACTTTCCAGTAAAAGATC 481
||||||| | ||||||||||||||||||||||||||||||||| |||||||| | ||||
Sbjct 411 AGCATAAAAAGCTTGGAGAGATATTTGACATATGGTGCCTTCATTTTCCAGTCACTGATC 470
Query 482 GTACTCCTGCTCGAGATATTGGGAAGCTCATTGAGAAG-ACAGTTAGGTCAGAGCACTAC 540
|||| |||||||||||| ||| ||||||||||||| || ||||||||||||||| ||| |
Sbjct 471 GTACCCCTGCTCGAGATCTTGTGAAGCTCATTGAG-AGAACAGTTAGGTCAGAGTACTTC 529
Query 541 CGTTTCCCAAATAGACCCATTTATATAGTTGGAGAATCTATTGGAGCTTCTCTTGCTCTG 600
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 CGTTTACCAAATAGACCCATTTATATAGTTGGAGAATCTATTGGAGCTTCTCTTGCTCTA 589
Query 601 GATGTTGCAGCCAGTAACCCTGACATTGATCTTGTCTTGATTCTGGCTAATCCAGTCACA 660
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 590 GATGTTGCAGCCAGTAACCCTGACATCGATCTTGTCTTGATTCTGGCTAATCCAGTCACA 649
Query 661 CGTTTTACCAACTTAATGTTGCAACCTGTATTGGCCCTACTGGAAATTTTGCCTGACGGA 720
||||| | |||||| |||||||||||| ||| || ||||||||||||||||| ||| ||
Sbjct 650 CGTTTCAACAACTTCATGTTGCAACCTTTATCGGGTCTACTGGAAATTTTGCCAGACAGA 709
Query 721 GTTCCCGGCTT-GATAACAGAGAATTTT-GGGTT--------TTA-CC-----AAGAAAT 764
|||||| |||| | | || |||||| || || ||| || || |||
Sbjct 710 GTTCCCAGCTTCCTTGA-GGAAAATTTTCGGTTTGAACAAGGTTATCCGTTTGCAGCAAT 768
Query 765 GTTCGAGACTATGCTCAATGAAAATGATGCCGCGCAGATGGGTAGAGGGCTATTAGGAGA 824
||||||||||||||| ||||||| ||||||||| ||||||||| | ||||||||||||||
Sbjct 769 GTTCGAGACTATGCTGAATGAAACTGATGCCGCACAGATGGGTGGTGGGCTATTAGGAGA 828
Query 825 CTTCTTTGCAACTTCA-TCTAATCTGCCTACTCTGATTAGAATCTTTCCCAAGGACACAC 883
| |||||||||||||| | ||| ||||| |||||| ||| |||||||| ||||||||||
Sbjct 829 CATCTTTGCAACTTCAGT-TAACCTGCCGACTCTGGCTAGGATCTTTCCAAAGGACACAC 887
Query 884 TTCTATGGAAGCTTCAATTGCTTAAGTCTGCTTCAGCGTCTGCTAATTCTCAGATGGACA 943
| ||||||||||||||| ||||||||||||||||||| |||||||| ||||| ||| |||
Sbjct 888 TGCTATGGAAGCTTCAACTGCTTAAGTCTGCTTCAGCATCTGCTAAGTCTCACATGCACA 947
Query 944 CAGTCAACGCCCAAACACTGATACTTCTGAGTGGACGTGATCAATGGTTAATGAACAAGG 1003
||||||| ||||||||||| |||||| ||||||||||||||||||||||| |||||||||
Sbjct 948 CAGTCAAAGCCCAAACACTAATACTTTTGAGTGGACGTGATCAATGGTTACTGAACAAGG 1007
Query 1004 AAGACATTGAAAGACTCCGTGGTGCATTGCC-AAGATGTGAAGTTCGTGAGCTT-GAGAA 1061
|||||||||||||||||| | || ||||||| || |||||||| ||| || || |||||
Sbjct 1008 AAGACATTGAAAGACTCCATAGTACATTGCCGAA-TTGTGAAGTCCGTAAG-TTCGAGAA 1065
Query 1062 TAATGGACAG-TTCCTCTTCTTGGAGGAT-GGAGTAGATCTGGTGAGTATCATCAAGCGT 1119
| | |||||| || || || ||||||||| ||| |||||||||||| |||||||||| ||
Sbjct 1066 TTACGGACAGCTT-CTATTTTTGGAGGATGGGA-TAGATCTGGTGACTATCATCAAGTGT 1123
Query 1120 GCGTATTATTATCGCCGTGGGAAGTCACTTGATTACATTTCGGATTACATTCTGCCTACC 1179
| ||||||||||||||||| ||||| ||||||||| |||| |||| |||||||||||||
Sbjct 1124 ACTTATTATTATCGCCGTGGAAAGTCGCTTGATTACGTTTCTGATTTCATTCTGCCTACC 1183
Query 1180 CCATTTGAGTTTAAAGAGTATGAAGAATCACAAAGATTGCTAACTGCTGTTACCTCCCCA 1239
||||||||| | |||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1184 CCATTTGAGCTCAAAGAGTATGAAGAATCACAAAGATTGCTAACTGTTATTACCTCCCCA 1243
Query 1240 GTCTTTCTTTCAACTCTAAAGAATGGTGCAGTGGTAAGATCGCTTGCAGGAATACCTTCA 1299
|||||||| ||||||||| | || ||| |||| |||||||| ||||| ||||||||||||
Sbjct 1244 GTCTTTCTCTCAACTCTAGACAACGGTACAGTAGTAAGATCACTTGCGGGAATACCTTCA 1303
Query 1300 GAGGGACCGGTTCTGTATGTTGGCAATCACATGTTGCTTGGTATGGAGTTGCATGCAATA 1359
|||||||||||||| |||||||||||||||||||||||||||| || |||| | || |
Sbjct 1304 GAGGGACCGGTTCTCTATGTTGGCAATCACATGTTGCTTGGTACCGAATTGCGTCCAGCA 1363
Query 1360 GCACTTCATTTTTTGAAAGAAAGGAACATTCTATTGCGAGGACTGGCACATCCATTGATG 1419
||| ||||||| |||||||| ||||||||||| ||||||||||||||||||||| |||||
Sbjct 1364 GCAATTCATTTCTTGAAAGAGAGGAACATTCTTTTGCGAGGACTGGCACATCCAGTGATG 1423
Query 1420 TTTACCaaaaaaaCTGGCTCAAAACTCCCTGACATGCAGCTGTACGACTTATTTAGGATT 1479
||| |||||||| |||||||||||||||||| ||||| ||| ||||| | |||||||
Sbjct 1424 TTTGCCAAAAAATTTGGCTCAAAACTCCCTGATATGCATATGTTCGACTCAGTTAGGATG 1483
Query 1480 ATAGGCGCAGTTCCCGTCTCGGGA-ATGAATTTCTACAAACTACTTCGTTCAAAGGCTCA 1538
|||||||||||||| ||||| | || |||||||| |||||||| ||||||||||||||
Sbjct 1484 ATAGGCGCAGTTCCGGTCTC-AAATATCAATTTCTATAAACTACTACGTTCAAAGGCTCA 1542
Query 1539 CGTGGCTTTGTACCCTGGGGGTGTTCGTGAAGCTTTGCACAGAAAGGGTGAAGAATACAA 1598
|||| |||||| ||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 1543 TGTGGTTTTGTATCCTGGAGGTGTTCGTGAAGCTTTGCACAGAAAGGGTGAAGTATACAA 1602
Query 1599 GTTATTTTGGCCAGAACATTCGGAGTTTGTAAGGATAGCATCTAAATTTGGAGCAAAAAT 1658
||| ||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||
Sbjct 1603 GTTGTTTTGGCCAGAACATTCAGAGTTTGTAAGGACCGCATCTAAATTTGGAACAAAAAT 1662
Query 1659 CATTCCTTTTGGAGTTGTTGGAGAAGATGATCTTTGTGAAATGGTTTTAGATTATGATGA 1718
|||||||||||| |||||||| ||||||||||| |||||| |||| || ||||| ||||
Sbjct 1663 CATTCCTTTTGGTGTTGTTGGTGAAGATGATCTCTGTGAAGTGGTCTTCGATTACAATGA 1722
Query 1719 TCAAATGAAGATCCCTTTCTTGAAGAATCTTATAGAAGAGATAACACAAGACTCT-GTTA 1777
||||||||||||||||||| |||||||||||||| ||||| |||||||||||||| ||
Sbjct 1723 TCAAATGAAGATCCCTTTCCTGAAGAATCTTATAAAAGAGTTAACACAAGACTCTACTT- 1781
Query 1778 ACTTGAGGAACGATGAAGAAGGCGAATTGGGAAAACAAGATTTACATCTACCTGGAATAG 1837
|||||||||||| ||||||||| ||| | || || |||| ||| ||| | |||||||||
Sbjct 1782 ACTTGAGGAACGGTGAAGAAGGAGAAGTAGGCAACCAAGCTTTGCATATGCCTGGAATAA 1841
Query 1838 TTCCAAAGATCCCGGGACGGTTTTACGCATACTTTGGGAAACCAATAGACACAGAAGGTA 1897
|||| |||||||||||||||||||||| ||||||||| | ||||||||| ||||||||||
Sbjct 1842 TTCCCAAGATCCCGGGACGGTTTTACGTATACTTTGGTAGACCAATAGAAACAGAAGGTA 1901
Query 1898 GAGAGAAAGAGCTAAACAATAAAGAGAAAGCTCATGAGGTTTACTTGCAGGTCAAGTCTG 1957
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1902 GAGAGAAAGAGCTAAATGATAAAGAGAAAGCTCATGAGGTTTACTTGCAGGTCAAGTCTG 1961
Query 1958 AGGTAGAAAGATGTATGAACTATTTGAAAATCAAAAGAGAAACTGATCCTTACAGAAACA 2017
|||| |||||||||||||| |||||||| |||||||||||| ||||||||| |||||||
Sbjct 1962 AGGTTGAAAGATGTATGAATTATTTGAAGATCAAAAGAGAAGGTGATCCTTATAGAAACA 2021
Query 2018 TTTT-GCCGAGGTCCCTCTATTACCTCACTCATGGTTTCTCTTCCCAAATCCCAACCTTC 2076
|||| || ||||||||||||| ||||| | |||||||| ||||| ||| ||||||| ||
Sbjct 2022 TTTTAGC-GAGGTCCCTCTATCACCTCTCACATGGTTTGTCTTCGCAAGTCCCAACGTTT 2080
Query 2077 GATCTCCGAAATCATTAAATTTAGTTACT 2105
|| ||||||||||| ||| ||| | ||||
Sbjct 2081 GACCTCCGAAATCAATAATTTTTGATACT 2109
> Ahg484460 jgi|Araly1|484460|fgenesh2_kg.5__452__AT3G26840.1
Length=2258
Score = 625 bits (338), Expect = 5e-178
Identities = 1022/1337 (76%), Gaps = 107/1337 (8%)
Strand=Plus/Plus
Query 798 GCAGATGGGTAGAGGGCTATTAGGAGACT-TCTTTGCAACTTCATCTAATCTGCCTACTC 856
||| |||||| ||||| | || |||| | || |||| |||| ||||||| |||||||
Sbjct 818 GCAAATGGGTGGAGGGATGCTAAGAGA-TCTCCTTGCTGTTTCAGCTAATCTTCCTACTC 876
Query 857 TGATTAGAATCTTTCCC-AAGGACACACTTCTATGGAAGCTTCAATTGCTTAAGTCTGCT 915
| | ||| || ||||| ||||||||||| || |||||||| || |||| |||||||||
Sbjct 877 TTAGTAGGAT-GTTCCCTAAGGACACACTGCTTTGGAAGCTGGAAATGCTAAAGTCTGCT 935
Query 916 -TCAGCGTCTGCT-AATTCTCAGATGGACACAGTCA-ACGCCCAAACACTGATACTTCTG 972
| || |||| | |||||||| || || |||||| | || ||||||| |||||||||
Sbjct 936 AT-TGCTTCTG-TGAATTCTCACATATACTCAGTCAGA-GCGGAAACACTCATACTTCTG 992
Query 973 AGTGGACGTGATCAATGGTTAATGAACAAGGAAGACATTGAAAGACTCCGTGGTGCA--T 1030
|||||||| ||||||||| | ||||||||||||||||||| ||| | | | | ||| |
Sbjct 993 AGTGGACGCGATCAATGGCTGCTGAACAAGGAAGACATTGACAGA-TAC-TCGCGCACGT 1050
Query 1031 TGCCAAGATGTGA-AGTTCGTGAGCTTGA-GAATAATGGACAG-TTCCTCTTCTTGGAGG 1087
|||||| |||| | || ||| |||| || | | ||||||||| |||| ||| |||||||
Sbjct 1051 TGCCAAAATGT-ATTGTCCGTAAGCTCGATG-ACAATGGACAGTTTCCCCTT-TTGGAGG 1107
Query 1088 ATGGAGTAGATCTGG-TGAGTATCATCAAGCGTGCGTATTATTATCGCCGTGGGAAGTCA 1146
| || |||||||||| | | |||||| ||| || | | || ||||||||||||||||||
Sbjct 1108 ACGGCGTAGATCTGGCT-ACTATCATTAAGTGTACTTGTTTTTATCGCCGTGGGAAGTCT 1166
Query 1147 CTTGATTACATTTCGGATTACATTCTGCCTACCCCATTTGAGTTTAAAGAGTATGAAGA- 1205
| ||| ||||| ||||||| ||| ||||||| |||||||| ||||| | | || |
Sbjct 1167 CACGATCACATTACGGATTATATTATGCCTACTACATTTGAG-TTAAA-ACAACAAATAG 1224
Query 1206 ATC-A-CAAAGATTGCTAACT-GCTGTTACCTCCCCAGTCTTTCTT-TCAACTCTA-AAG 1260
| | | || |||| |||| | | || ||| ||||| || | || ||||||||| |||
Sbjct 1225 A-CGACCACCGATTACTAA-TGGATGGTACTTCCCCTGT-AATGTTGTCAACTCTAGAAG 1281
Query 1261 AATGGTGCAGTGGTAA-GATCGCTTGCAGGAATACCTTCAGAGGGACCGGTTCTGTATGT 1319
| || |||| |||| || | || | |||| ||||||||||||||||||||||||||||
Sbjct 1282 -ACGGCACAGTTGTAAGGAGC-CTAGAAGGATTACCTTCAGAGGGACCGGTTCTGTATGT 1339
Query 1320 TGGCAATCACATGTTGCTTGGTATG-GAGTT-GCATGCAATAGC-A-CTTCATTTTTTGA 1375
|||| |||||||| | |||| || ||||| || | |||| | | || || | |||
Sbjct 1340 TGGCTATCACATGATA-TTGGGATTTGAGTTAGC-TCCAAT-GTTAACT-CAACTCATGA 1395
Query 1376 AAGAAAGGAACATTCTAT-TGCGAGGACTGGCACATCC-ATTGATGTTTACCaaaaaaaC 1433
|||| |||||||||| | |||| || |||||||||| || ||| |||| | || |
Sbjct 1396 AAGAGAGGAACATTC-ACCTGCGGGGTTTGGCACATCCGAT-GATATTTA--AGAAT--C 1449
Query 1434 TGGCTCAAAACTCCCT-G---ACATGCAGCTGTACGACTTATTTAGGATTA-TAGGCGCA 1488
| |||| |||| | | ||| | || ||| ||| || || | ||| | || | |
Sbjct 1450 T---TCAAGACTCGTTAGTCGACACGAAGATGTTTGACAAATATAAG-TTAATGGGTGGA 1505
Query 1489 GTTCCCGTCTCGGGAATG-AATTTCTACAAACTACTTCGTTCAAAGGCTCACGTGGCTTT 1547
||||| ||||| | | ||| ||||||||||||||||| |||| |||||||| ||||
Sbjct 1506 GTTCCAGTCTCCC-AGTTCAATATCTACAAACTACTTCGTGAAAAGTCTCACGTG-CTTT 1563
Query 1548 -GTACCCTGGGGGTGTTCGTGAAGCTTTGCACAGAAAGGGTGAAGAATACAAGTTATTTT 1606
||||||||| ||||| |||||||||||||| ||||||||||||||||||||| | ||||
Sbjct 1564 TGTACCCTGGAGGTGTCCGTGAAGCTTTGCATAGAAAGGGTGAAGAATACAAGCTGTTTT 1623
Query 1607 GGCCAGAAC-ATTCGGAGTTTGTAAG-GATAGCATCTAAATTTGGAGCAAAAATCATTCC 1664
||||||||| || | ||||||||||| | | ||||||||||||||||| |||||| ||||
Sbjct 1624 GGCCAGAACGAT-CTGAGTTTGTAAGAGTT-GCATCTAAATTTGGAGCGAAAATCGTTCC 1681
Query 1665 TTTTGGAGTTGTTGGAGAAGATGATCTT-TGTGAAATGGTTTTAGATTATGATGATCAAA 1723
||| || |||||||||||||| || | | || ||||| || |||||| |||||||||
Sbjct 1682 TTTCGGTGTTGTTGGAGAAGACGA-CATCTGCGAAATTGTCCTAGATTCCAATGATCAAA 1740
Query 1724 TGAAG-ATCCCTTTCTTGAAGAATCTTA-TAGAAGAGATAACACAAG-ACTCTGTTAACT 1780
||| |||||| || | ||| || ||| | ||| || ||| ||| || ||| |||
Sbjct 1741 -GAAACATCCCTATCCTAAAGGAT-TTAATGGAAAAGGCAACT-AAGGACGCTGGGAACA 1797
Query 1781 TGAGG-AA--CGATGAAGAAGGCGAATTGGGAAAACAAGATTTAC-ATCTACCTGGAATA 1836
| ||| || ||| || || | |||||||||||| ||||||| | || | || ||| |
Sbjct 1798 TAAGGGAAGGCGACGA-GA-G-CGAATTGGGAAACCAAGATTG-CTATTTCCCAGGACTG 1853
Query 1837 GTTCCAAAGATCCCGGGACGGTTTTACGCAT-ACTTTGGGAAACCAATAGACACAGAAGG 1895
|| || ||||| ||||| ||||| ||| || ||||||| ||||||||||| |||| |||
Sbjct 1854 GTACCTAAGATTCCGGGGCGGTTCTACT-ATTACTTTGGAAAACCAATAGAAACAGCAGG 1912
Query 1896 TAGAG-AGAAAGAGCT-AAACAATAAAGAGAAAG-CTCATGAGGTTTACTTGCAGGTCAA 1952
|| || |||||||||| ||| | ||||| |||| | || ||| |||||||||| || ||
Sbjct 1913 TA-AGGAGAAAGAGCTGAAAGAC-AAAGA-AAAGGCACAAGAGCTTTACTTGCAAGTAAA 1969
Query 1953 GTCTGAGGTAGAA-AGATGTAT-GAACTATTTGAAAA-TCAAAAGAGAAACTGATCCTTA 2009
||||||||| ||| | ||| || | |||||| |||| | |||||||| | |||||||||
Sbjct 1970 GTCTGAGGTCGAACA-ATGCATTGC-CTATTT-AAAAGTAAAAAGAGAGAGTGATCCTTA 2026
Query 2010 CAGAAACATT-TTGCCGAGG-TCCCTCTATTA--CCTCACTCATGGTTTCTCTTCCCAAA 2065
|||| || || ||||| ||| | | ||| | |||||| |||||| ||||| |||
Sbjct 2027 CAGACAC-TTGTTGCCAAGGATGT-TGTATCAAGCCTCAC--ATGGTTGGTCTTCTGAAA 2082
Query 2066 TCCCAACCTTCGATCTC 2082
| ||||| || ||||||
Sbjct 2083 TTCCAACGTTTGATCTC 2099
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83493817040
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5