BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41130.2
Length=2297
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493862 jgi|Araly1|493862|fgenesh2_kg.7__3295__AT5G41130.1 2303 0.0
Ahg493863 jgi|Araly1|493863|fgenesh2_kg.7__3296__AT5G41120.1 1576 0.0
Ahg347046 jgi|Araly1|347046|fgenesh1_pg.C_scaffold_5000438 440 2e-122
> Ahg493862 jgi|Araly1|493862|fgenesh2_kg.7__3295__AT5G41130.1
Length=2226
Score = 2303 bits (1247), Expect = 0.0
Identities = 1362/1419 (96%), Gaps = 2/1419 (0%)
Strand=Plus/Plus
Query 878 GGTGGAGGGCTATTAGGAGACCTCTTTGCAACTTCAGTTAACCTGCCGACTCTGGCTAGG 937
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 809 GGTGGTGGGCTATTAGGAGACATCTTTGCAACTTCAGTTAACCTGCCGACTCTGGCTAGG 868
Query 938 ATCTTTCCAAAGGACACACTTCTATGGAAGCTTCAACTGCTTAAGTCTGCTTCAGCATCT 997
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 869 ATCTTTCCAAAGGACACACTGCTATGGAAGCTTCAACTGCTTAAGTCTGCTTCAGCATCT 928
Query 998 GCTAAGTCTCACATGTACACAGTCAAAGCCCAAACACTTATACTTTTGAGTGGACGCGAT 1057
||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 929 GCTAAGTCTCACATGCACACAGTCAAAGCCCAAACACTAATACTTTTGAGTGGACGTGAT 988
Query 1058 CAGTGGTTACTAAACAAGGAAGACATTGAGAA-ACTCCATTGTACATTGCCGAATTGTGA 1116
|| |||||||| ||||||||||||||||| || ||||||| |||||||||||||||||||
Sbjct 989 CAATGGTTACTGAACAAGGAAGACATTGA-AAGACTCCATAGTACATTGCCGAATTGTGA 1047
Query 1117 AGTCCGTAAGTTCGAGAATTACGGACAGCTTCTCTTTTTGGAGGATGGGGTAGATCTGGT 1176
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 1048 AGTCCGTAAGTTCGAGAATTACGGACAGCTTCTATTTTTGGAGGATGGGATAGATCTGGT 1107
Query 1177 GACTATCATCAAGTGTACTTATTATTATCGCCGTGGAAAATTGCTTGATTACGTTTCTGA 1236
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1108 GACTATCATCAAGTGTACTTATTATTATCGCCGTGGAAAGTCGCTTGATTACGTTTCTGA 1167
Query 1237 TTTCATTCTGCCTACCCCATTTGAGCTCAAAGAGTATGAAGAATCACAAAGATTGCTAAC 1296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1168 TTTCATTCTGCCTACCCCATTTGAGCTCAAAGAGTATGAAGAATCACAAAGATTGCTAAC 1227
Query 1297 TGCTATAACCTCCCCAGTCTTTCTCTCAACTCTAGATAACGGTACAGTAGTAAGATCACT 1356
|| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1228 TGTTATTACCTCCCCAGTCTTTCTCTCAACTCTAGACAACGGTACAGTAGTAAGATCACT 1287
Query 1357 TGCGGGAATACCTTCAGAGGGACCGGTTCTCTATGTTGGCAATCACATGTTGCTTGGTAC 1416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1288 TGCGGGAATACCTTCAGAGGGACCGGTTCTCTATGTTGGCAATCACATGTTGCTTGGTAC 1347
Query 1417 CGAATTGCGTCCAGCAGCAATTCATTTCCTGAAAGAAAAGAACATTCTGTTGCGAGGACT 1476
|||||||||||||||||||||||||||| ||||||| | ||||||||| |||||||||||
Sbjct 1348 CGAATTGCGTCCAGCAGCAATTCATTTCTTGAAAGAGAGGAACATTCTTTTGCGAGGACT 1407
Query 1477 TGCACATCCAGTGATGTTTGCCAAAAAATATGGCTCAAAACTCCCTGATATGCATATGTT 1536
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1408 GGCACATCCAGTGATGTTTGCCAAAAAATTTGGCTCAAAACTCCCTGATATGCATATGTT 1467
Query 1537 CGACTCAGTTAGGATGATAGGCGCAGTTCCTGTCTCAAATATCAATTTCTATAAACTACT 1596
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1468 CGACTCAGTTAGGATGATAGGCGCAGTTCCGGTCTCAAATATCAATTTCTATAAACTACT 1527
Query 1597 TCGCTCAAAGGCTCATGTGGTTTTGTATCCTGGAGGTGTCCGTGAAGCTTTGCACAGAAA 1656
|| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1528 ACGTTCAAAGGCTCATGTGGTTTTGTATCCTGGAGGTGTTCGTGAAGCTTTGCACAGAAA 1587
Query 1657 GGGTGAAGTATACAAGTTGTTTTGGCCAGAACATTCAGAGTTTGTAAGGACCGCATCTAA 1716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1588 GGGTGAAGTATACAAGTTGTTTTGGCCAGAACATTCAGAGTTTGTAAGGACCGCATCTAA 1647
Query 1717 ATTTGGAACAAAAATCATTCCTTTTGGGGTTGTTGGTGAAGATGATCTCTGTGAAGTGGT 1776
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1648 ATTTGGAACAAAAATCATTCCTTTTGGTGTTGTTGGTGAAGATGATCTCTGTGAAGTGGT 1707
Query 1777 CTTCGATTACAATGATCAAATGAAGATCCCTTTCCTGAAGAATCTTATAAAAGAGTTATC 1836
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1708 CTTCGATTACAATGATCAAATGAAGATCCCTTTCCTGAAGAATCTTATAAAAGAGTTAAC 1767
Query 1837 ACAAGACTCTACTTACTTGAGGAACGGTGAAGAAGGAGAAGTAGGAAACCAAGATTTGCA 1896
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 1768 ACAAGACTCTACTTACTTGAGGAACGGTGAAGAAGGAGAAGTAGGCAACCAAGCTTTGCA 1827
Query 1897 TATGCCTGGAATAGTTCCCAAGATGCCGGGACGGTTTTACGTATACTTTGGGAAACCAAT 1956
||||||||||||| |||||||||| |||||||||||||||||||||||||| | ||||||
Sbjct 1828 TATGCCTGGAATAATTCCCAAGATCCCGGGACGGTTTTACGTATACTTTGGTAGACCAAT 1887
Query 1957 TTACACAGAAGGTAGAGAGGACGAGCTAAATGATAAAGAGAAAGCTCATGAGGTTTACTT 2016
| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1888 AGAAACAGAAGGTAGAGAGAAAGAGCTAAATGATAAAGAGAAAGCTCATGAGGTTTACTT 1947
Query 2017 GCAGGTCAAGTCTGAGGTAGAAAGATGTATGACCTATTTGAAGATCAAAAGAGAAGGTGA 2076
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 1948 GCAGGTCAAGTCTGAGGTTGAAAGATGTATGAATTATTTGAAGATCAAAAGAGAAGGTGA 2007
Query 2077 TCCTTATAGAAACATTTTAGCGAGGTCCCTCTATCACTTCTCACATGGTTTCTCTTCCCA 2136
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||
Sbjct 2008 TCCTTATAGAAACATTTTAGCGAGGTCCCTCTATCACCTCTCACATGGTTTGTCTTCGCA 2067
Query 2137 AGTCCCAACCTTTGACCTCCGAAATCAATAATTTTAGTTACTGGATTTGTGACTTAATTA 2196
||||||||| ||||||||||||||||||||||||| | |||| ||||||||||||||||
Sbjct 2068 AGTCCCAACGTTTGACCTCCGAAATCAATAATTTTTGATACTAAATTTGTGACTTAATTA 2127
Query 2197 ACTTTGTGGAATTTGGATATGTTATTGTAACTTCTAAAAGTACAAGGCTGTTGATGTAGA 2256
|||||||||||||||||||||||||||||||||||||||||| | ||||||| || ||||
Sbjct 2128 ACTTTGTGGAATTTGGATATGTTATTGTAACTTCTAAAAGTATATGGCTGTTAATATAGA 2187
Query 2257 AATTGAGTAAGTTCGGGGTGTTATGTTAAAAATTCATGC 2295
| |||||||||||||||||||||||||||||||||||||
Sbjct 2188 AGTTGAGTAAGTTCGGGGTGTTATGTTAAAAATTCATGC 2226
Score = 1199 bits (649), Expect = 0.0
Identities = 717/751 (95%), Gaps = 0/751 (0%)
Strand=Plus/Plus
Query 1 TTCTTCTCTCGATCTCGGATTTTTCTGATCGATGGCGGTTCCCACACTCTGTATCGCCGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTCTTCTCTCGATCTCGGATTTTTCTGATCGATGGCGGTTCCCACACTCTGTATCGCCGA 60
Query 61 TGGAATCTACCCCACTGCTTTTTTCTACCGGAATTCAGTCCGACGACTGACCTCCGTCGC 120
|||||||||||||| || ||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 61 TGGAATCTACCCCAATGATTTTTTCTACCGGAATTCAATCCGACGACTGGCCTCCGTCGC 120
Query 121 GCATGATCGGTTTACGAACCCGAAATTCGGAATCGATGGACGTCTACGGAACGGACCGAA 180
||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||
Sbjct 121 GCATGATCGGTTTACGATCCCGAAATTCGGAATCGATGGACGTCTACGGAGCGGAGGGAA 180
Query 181 GGTGACGGCAACGGTGAATCCATATACGTACACGGAGGCGGCGCAGCCCGAAGAGCGGAA 240
||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 181 GGTGACGGCGACGGTGAATCCGTATACGTACACGGAGGCGGCGCAGCCAGAAGAGCGGAA 240
Query 241 GAGTTTGACGGATTTTTTGGTGGAAGCTAGAGATTTCGTTAGATCTGACGGCGGAGATGG 300
|||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||
Sbjct 241 GAGTTTGACGGATTTTTTTGTGGAAGCTAGAGATTTCTTTAGATCCGACGGCGGAGATGG 300
Query 301 TGGTCCACCTCGGTGGTTCTCTCCCTTGGAATGTGGCGCACGCGCTCCAGAATCTCCTCT 360
|||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 301 TGGTCCGCCTCGGTGGTTCTCTCCGTTGGAATGTGGCGCACGTTCTCCAGAATCTCCTCT 360
Query 361 TCTTCTCTACTTACCTGGGATCGATGGTACTGGATTAGGGCTCATTCGCCAGCATAAGAG 420
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 361 TCTTCTCTACTTACCTGGGATCGATGGTACTGGATTAGGGCTCATTCGTCAGCATAAAAA 420
Query 421 GCTTGGAGAGATATTTGACATATGGTGCCTTCACTTTCCAGTCACTGATCGTACCCCTGC 480
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 421 GCTTGGAGAGATATTTGACATATGGTGCCTTCATTTTCCAGTCACTGATCGTACCCCTGC 480
Query 481 TCGAGATCTTGTGAAGCTCATTGAGAGAACAGTTAGGTCAGAGTACTTCCGTTTACCAAA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TCGAGATCTTGTGAAGCTCATTGAGAGAACAGTTAGGTCAGAGTACTTCCGTTTACCAAA 540
Query 541 GAGACCCATATACATAGTTGGAGAATCTATTGGAGCTTGTCTTGCTCTAGATGTTGCAGC 600
|||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 541 TAGACCCATTTATATAGTTGGAGAATCTATTGGAGCTTCTCTTGCTCTAGATGTTGCAGC 600
Query 601 CAGTAACCCTGACATTGATCTTGTCTTGATTCTAGCTAATCCAGTCACACGTGTCAACAA 660
||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 601 CAGTAACCCTGACATCGATCTTGTCTTGATTCTGGCTAATCCAGTCACACGTTTCAACAA 660
Query 661 CTTCATGTTGCAACCTTTATCGAGTCTATTGGAAATTTTGCCAGACGGAGTTCCCAGCTT 720
|||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||
Sbjct 661 CTTCATGTTGCAACCTTTATCGGGTCTACTGGAAATTTTGCCAGACAGAGTTCCCAGCTT 720
Query 721 CCTGGAGGAGAATTTTCGGTTTGAACAAGGT 751
||| ||||| |||||||||||||||||||||
Sbjct 721 CCTTGAGGAAAATTTTCGGTTTGAACAAGGT 751
> Ahg493863 jgi|Araly1|493863|fgenesh2_kg.7__3296__AT5G41120.1
Length=2179
Score = 1576 bits (853), Expect = 0.0
Identities = 1165/1316 (89%), Gaps = 20/1316 (2%)
Strand=Plus/Plus
Query 878 GGTGGAGGGCTATTAGGAGACCTCTTTGCAACTTCAGT-TAACCTGCCGACTCTGGCTAG 936
||| ||||||||||||||||| |||||||||||||| | ||| ||||| |||||| |||
Sbjct 784 GGTAGAGGGCTATTAGGAGACTTCTTTGCAACTTCA-TCTAATCTGCCTACTCTGATTAG 842
Query 937 GATCTTTCCAAAGGACACACTTCTATGGAAGCTTCAACTGCTTAAGTCTGCTTCAGCATC 996
|||||||| ||||||||||||||||||||||||||| |||| |||||||| ||||| ||
Sbjct 843 AATCTTTCCCAAGGACACACTTCTATGGAAGCTTCAATTGCTAAAGTCTGCATCAGCGTC 902
Query 997 TGCTAAGTCTCACATGTACACAGTCAAAGCCCAAACACTTATACTTTTGAGTGGACGCGA 1056
|| ||| ||||| ||| |||||||||| ||||||||||| |||||| |||||||||| ||
Sbjct 903 TGTTAATTCTCAGATGGACACAGTCAACGCCCAAACACTGATACTTCTGAGTGGACGTGA 962
Query 1057 TCAGTGGTTACTAAACAAGGAAGACATTGAGAA-ACTCCATTGTACATTGCCGAA-TTGT 1114
||| |||||| | ||||||||||||||||| || ||||| | || ||||||| || |||
Sbjct 963 TCAATGGTTAATGAACAAGGAAGACATTGA-AAGACTCCGTGGTGCATTGCC-AAGATGT 1020
Query 1115 GAAGTCCGTAAG-TTCGAGAATTACGGACAGCTT-CTCTTTTTGGAGGATGGGGTAGATC 1172
||||| ||| || || ||| || | |||| | || ||||| ||||||||||| |||||||
Sbjct 1021 GAAGTTCGTGAGCTT-GAGCATAATGGACCG-TTCCTCTTCTTGGAGGATGGAGTAGATC 1078
Query 1173 TGGTGACTATCATCAAGTGTACTTATTATTATCGCCGTGGAAAATTGCTTGATTACGTTT 1232
||||||||||||||||| || | ||||||||||||||||| | | ||||||||| |||
Sbjct 1079 TGGTGACTATCATCAAGCGTGCCTATTATTATCGCCGTGGGATGTCACTTGATTACATTT 1138
Query 1233 CTGATTTCATTCTGCCTACCCCATTTGAGCTCAAAGAGTATGAAGAATCACAAAGATTGC 1292
| |||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1139 CGGATTACATTTTGCCTACCCCATTTGAGTTCAAAGAGTATGAAGAATCACAAAGATTGC 1198
Query 1293 TAACTGCTATAACCTCCCCAGTCTTTCTCTCAACTCTAGATAACGGTACAGTAGTAAGAT 1352
|||||||| | ||||||||||||||||||||||||||| | || ||| ||||||||||||
Sbjct 1199 TAACTGCTGTTACCTCCCCAGTCTTTCTCTCAACTCTAAACAATGGTGCAGTAGTAAGAT 1258
Query 1353 CACTTGCGGGAATACCTTCAGAGGGACCGGTTCTCTATGTTGGCAATCACATGTTGCTTG 1412
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1259 CACTTGCAGGAATACCTTCAGAGGGACCGGTTCTGTATGTTGGCAATCACATGTTGCTTG 1318
Query 1413 GTACCGAATTGCGTCCAGCAGCAATTCATTTCCTGAAAGAAAAGAACATTCTGTTGCGAG 1472
||| || |||| | || |||| |||||||| ||||||||| |||||||||||||||||
Sbjct 1319 GTATGGAGTTGCATGCAATAGCACTTCATTTCTTGAAAGAAAGGAACATTCTGTTGCGAG 1378
Query 1473 GACTTGCACATCCAGTGATGTTTGCCAAAAAATATGGCTCAAAACTCCCTGATATGCA-T 1531
|||| ||||||||| |||||||| ||||||||| |||||||||||||||||||||||| |
Sbjct 1379 GACTGGCACATCCATTGATGTTTACCAAAAAATTTGGCTCAAAACTCCCTGATATGCAGT 1438
Query 1532 ATGTTCGACTCAGTTAGGATGATAGGCGCAGTTCCTGTCTCAA-ATATCAATTTCTATAA 1590
||| ||||| | ||||||| |||||||||||||||||||| | || ||||| || ||
Sbjct 1439 -TGTACGACTTATTTAGGATAATAGGCGCAGTTCCTGTCTCGGGA-ATGAATTTTTACAA 1496
Query 1591 ACTACTTCGCTCAAAGGCTCATGTGGTTTTGTATCCTGGAGGTGTCCGTGAAGCTTTGCA 1650
||||||||| ||||||||||| |||| |||||| ||||||||||| ||||||||||||||
Sbjct 1497 ACTACTTCGTTCAAAGGCTCACGTGGCTTTGTACCCTGGAGGTGTTCGTGAAGCTTTGCA 1556
Query 1651 CAGAAAGGGTGAAGTATACAAGTTGTTTTGGCCAGAACATTCAGAGTTTGTAAGGACCGC 1710
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 1557 TAGAAAGGGTGAAGAATACAAGTTGTTTTGGCCAGAACATTCGGAGTTTGTAAGGATAGC 1616
Query 1711 ATCTAAATTTGGAACAAAAATCATTCCTTTTGGGGTTGTTGGTGAAGATGATCTCTGTGA 1770
||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1617 ATCTAAATTTGGAGCAAAAATCATTCCTTTTGGAGCTGTTGGTGAAGATGATCTCTGTGA 1676
Query 1771 AGTGGTCTTCGATTACAATGATCAAATGAAGATCCCTTTCCTGAAGAATCTTATAAAAGA 1830
| |||| || |||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 1677 AATGGTTTTAGATTACAATGATCAAATGAAGATCCCTTTCTTGAAGAATCTTATTGAAGA 1736
Query 1831 GTTATCACAAGACTCTACTTA-CTTGAGGAACGGTGAAGAAGGAGAAGTAGGAAACCAAG 1889
| || |||||||||| ||| ||||||||||| ||||||||| ||| | ||||| ||||
Sbjct 1737 GATAACACAAGACTCCG-TTAACTTGAGGAACGATGAAGAAGGCGAATTGGGAAAACAAG 1795
Query 1890 ATTTGCATATGCCTGGAATAGTTCCCAAGATGCCGGGACGGTTTTACGTATACTTTGGGA 1949
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1796 ATTTGCATGTGCCTGGAATAGTTCCCAAGATTCCGGGACGGTTTTACGTATACTTTGGGA 1855
Query 1950 AACCAATTTACACAGAAGGTAGAGAGGAC-GAGCTAAATGATAAAGAGAAAGCTCATGAG 2008
||||||| | ||||||||||||| ||| ||||||||| ||||||||||||||||||||
Sbjct 1856 AACCAATAGAAACAGAAGGTAGAG-GGAAAGAGCTAAATAATAAAGAGAAAGCTCATGAG 1914
Query 2009 GTTTACTTGCAGGTCAAGTCTGAGGTAGAAAGATGTATGACCTATTTGAAGATCAAAAGA 2068
||||||||| |||||||||||||||| |||||||||||||||||||| ||||| ||||||
Sbjct 1915 GTTTACTTGGAGGTCAAGTCTGAGGTTGAAAGATGTATGACCTATTTAAAGATGAAAAGA 1974
Query 2069 GAAGGTGATCCTTATAGAAACATTTTAGC-GAGGTCCCTCTATCACTTCTCACATGGTTT 2127
||| ||||||||| ||||||||||| || |||||| |||||| || |||| || |||||
Sbjct 1975 GAAACTGATCCTTACAGAAACATTTT-GCCGAGGTCGCTCTATTACCTCTCTCACGGTTT 2033
Query 2128 CTCTTCCCAAGTCCCAACCTTTGACCTCCGAAATCAATAATTTTAGTTACTGGATT 2183
|||||||||| ||||||||||||| ||||||||||| ||| |||||||||| ||||
Sbjct 2034 CTCTTCCCAAATCCCAACCTTTGATCTCCGAAATCATTAAATTTAGTTACTAGATT 2089
Score = 721 bits (390), Expect = 0.0
Identities = 493/544 (91%), Gaps = 2/544 (0%)
Strand=Plus/Plus
Query 178 GAAGGTGACGGCAACGGTGAATCCATATACGTACACGGAGGCGGCGCAGCCCGAAGAGCG 237
|||| ||| ||| ||||||||||| ||| |||| ||||||| | | ||| || || ||
Sbjct 168 GAAGTTGAAGGCGACGGTGAATCCGTATTCGTATACGGAGGAAGTACGGCCTGAGGAACG 227
Query 238 GAAGAGTTTGACGGATTTTTTGGTGGAAGCTAGAGATTTCGTTAGATCTGACGGCGGAGA 297
||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||
Sbjct 228 GAAGAGTTTGACGGATTTTTTAGTGGAAGCTGGAGATTTCGTTAGATCAGACGGCGGAGA 287
Query 298 TGGTGGTCCACCTCGGTGGTTCTCTCCCTTGGAATGTGGCGCACGCGCTCCAGAATCTCC 357
||||||||| || ||||||||||| || ||||||||||||||||| ||||| | ||||||
Sbjct 288 TGGTGGTCCGCCACGGTGGTTCTCACCGTTGGAATGTGGCGCACGTGCTCCTGGATCTCC 347
Query 358 TCTTCTTCTCTACTTACCTGGGATCGATGGTACTGGATTAGGGCTCATTCGCCAGCATAA 417
|||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||
Sbjct 348 TCTTCTTCTCTACTTACCTGGGATTGATGGTACTGGATTAGGGCTCATTCGTCAACATAA 407
Query 418 GAGGCTTGGAGAGATATTTGACATATGGTGCCTTCACTTTCCAGTCACTGATCGTACCCC 477
|||||||||||||||||||||||||||||||||||||||||| || | |||||||| ||
Sbjct 408 GAGGCTTGGAGAGATATTTGACATATGGTGCCTTCACTTTCCGGTGAAAGATCGTACTCC 467
Query 478 TGCTCGAGATCTTGTGAAGCTCATTGAGA-GAACAGTTAGGTCAGAGTACTTCCGTTTAC 536
||||||||||||||||||||||||||||| || |||||||||||||| ||| || ||| |
Sbjct 468 TGCTCGAGATCTTGTGAAGCTCATTGAGAAGA-CAGTTAGGTCAGAGCACTACCATTTCC 526
Query 537 CAAAGAGACCCATATACATAGTTGGAGAATCTATTGGAGCTTGTCTTGCTCTAGATGTTG 596
|||| ||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 527 CAAATAGACCAATATATATAGTTGGAGAATCTATTGGAGCTTCTCTTGCTCTAGATGTTG 586
Query 597 CAGCCAGTAACCCTGACATTGATCTTGTCTTGATTCTAGCTAATCCAGTCACACGTGTCA 656
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||
Sbjct 587 CAGCCAGTAACCCTGATATTGATCTTGTCTTGATTCTGGCTAATCCAGTCACACGTTTCA 646
Query 657 ACAACTTCATGTTGCAACCTTTATCGAGTCTATTGGAAATTTTGCCAGACGGAGTTCCCA 716
|||||||||||||||||||||||| | | ||| ||||||||||||| |||| ||||||||
Sbjct 647 ACAACTTCATGTTGCAACCTTTATTGGGCCTACTGGAAATTTTGCCTGACGAAGTTCCCA 706
Query 717 GCTT 720
||||
Sbjct 707 GCTT 710
> Ahg347046 jgi|Araly1|347046|fgenesh1_pg.C_scaffold_5000438
Length=2109
Score = 440 bits (238), Expect = 2e-122
Identities = 992/1338 (74%), Gaps = 123/1338 (9%)
Strand=Plus/Plus
Query 878 GGTGGAGGGCTATTAGGAGACCTCTTTGCAACTTCAGTTAACCTGCCGACTCTG-GCTAG 936
||||||||| | || |||| ||||||||| ||||| ||| || || ||| || | |||
Sbjct 832 GGTGGAGGGATGCTAAGAGATCTCTTTGCAGTTTCAGCTAATCTTCCTACTTTGAG-TAG 890
Query 937 GATCTTTCCAAAGGACACACTTCTATGGAAGCTTCA-ACTGCTTAAGTCTG-C-TTCAGC 993
||| || || ||||| ||||| || ||||||||| | | ||||||||| || | || |
Sbjct 891 GATGTTCCCTAAGGAGACACTGCTTTGGAAGCTTGAGA-TGCTTAAGTGTGCCATT--TC 947
Query 994 ATCTGCT-AAGTCTCACATGTACACAGTCAAAGCCCAAACACTTATACTTTTGAGTGGAC 1052
||||| | || |||||||| ||| | |||| ||| ||||||| |||||| |||||||
Sbjct 948 ATCTG-TAAATTCTCACATATACTCGGTCAGAGCTGAAACACTGATACTTCCAAGTGGAC 1006
Query 1053 GCGATCAGTGGTTACTA-AACAAGGAAGACAT--TGAGAAACTCCATTGTACATTGCCGA 1109
||||||| ||| | | | || |||||||||| | ||| ||| | | || ||||| |
Sbjct 1007 GCGATCAATGGATGC-ATAATGAGGAAGACATAGTCAGATACT-C-GCGAACGTTGCCAA 1063
Query 1110 ATTGTGA-AGTCCGTAAG-TTCGA-GAATTACGGACAGCTTCTCTTTTTGGAGGATGGGG 1166
| ||| | |||||||||| || || | | | |||||| ||| | |||||||||| |
Sbjct 1064 AATGT-ATAGTCCGTAAGCTT-GATG-ACAATGGACAGTTTCCCCTTTTGGAGGACAGCC 1120
Query 1167 TAGATCTGG-TGACTATCATCAAG-TGTACTTATTATTATCGCCGTGGAAAAT-TGCTTG 1223
||||||||| | |||||||||||| | ||||| || |||||||||||| || | | | ||
Sbjct 1121 TAGATCTGGCT-ACTATCATCAAGCT-TACTTGTTTTTATCGCCGTGGGAAGTCT-CATG 1177
Query 1224 ATTACGTTTCTGATTTCATTCTGCCTACCCCATTTGAGCT-C-A-AA-GAGTATGAAGAA 1279
|| || |||| |||| |||| |||||||| |||||| | | | || | || || | |
Sbjct 1178 ATCACATTTCGGATTACATTAAACCTACCCCTTTTGAGTTACAACAACAATTA-GACG-A 1235
Query 1280 TCACAAAGATTGCTAACT-GCT-ATAACCTCCCCAGTCTTTCTCTCAACTCTAGATA-AC 1336
||| ||||||||| | | | | | || || || | || ||||||||||| | ||
Sbjct 1236 GCAC--CGATTGCTAA-TGGATGCT-ATTTCACCTGTAATGCTATCAACTCTAGA-AGAC 1290
Query 1337 GGTACAGTAGTAA-GATCACTTGCGGGAATACCTTCAGAGGGACCGGTTCTCTATGTTGG 1395
|||| | | |||| || | |||| ||| |||||||||||||||||||| | ||||||||
Sbjct 1291 GGTAGAATTGTAAGGAGC-CTTGAAGGATTACCTTCAGAGGGACCGGTTGTATATGTTGG 1349
Query 1396 CAATCACATGTTGCTT-GGTA-CCGAATT-GCGTCCAGCAGCA-ATTCATTTCCTGAAAG 1451
| |||||||| | || || | || || || |||| | | || | |||||||||
Sbjct 1350 CTATCACATGAT-ATTAGG-ATTTGAGTTGGC-TCCAATGGTAGGTTTA-CTCCTGAAAG 1405
Query 1452 AAAAGAACATTCTGTTGCGAGGACTTG-CACATCC-AGTGATGTTTGCCAAAAAATATGG 1509
| | |||||||| |||| || ||| ||||||| | || | ||| | ||||
Sbjct 1406 AGAGGAACATTCACATGCGTGG-TTTGACACATCCTA-TGGTATTT----ATGTATAT-- 1457
Query 1510 CTCAAAACTCCCTGA-T--A--TGCATATGTTCGACTCAGT-TAGGATGATAGGCGCAGT 1563
| ||| ||| | | | | | | | ||||| ||| | | || | | || || | ||
Sbjct 1458 C-CAAGACT-CGTTAGTCGACCCGAAAATGTTTGAC-AAATATAAGTTAATGGGTGGGGT 1514
Query 1564 TCCTGTCTCAAATATCAATTTCTATAAACTACTT-CGCT-CAAAGGCTCATGTGGTTTTG 1621
||||||||| ||||| |||||||| |||||| || || | |||| |||| ||| |||||
Sbjct 1515 TCCTGTCTCCAATATGAATTTCTACAAACTA-TTACG-TGGAAAGTCTCACGTGCTTTTG 1572
Query 1622 TATCCTGGAGGTGTCCGTGAAGCTTTGCACAGAAAGGGTGAAGTATACAAGTTGTTTTGG 1681
||||||||||||||||||||||| ||||| ||||||||||||| ||||||| |||| |||
Sbjct 1573 TATCCTGGAGGTGTCCGTGAAGCCTTGCATAGAAAGGGTGAAGAATACAAGCTGTTCTGG 1632
Query 1682 CCAGAAC-ATTCAGAGTTTGTAAG-GACCGCATCTAAATTTGGAACAAAAATCATTCCTT 1739
||||||| || | |||||||| || | ||||||||||||||| | |||||| ||||||
Sbjct 1633 CCAGAACGATCC-GAGTTTGTGAGAGTT-GCATCTAAATTTGGAGCGAAAATCGTTCCTT 1690
Query 1740 TTGGGGTTGTTGGTGAAGATGATC-TCTGTGAAG-TGGTCTTCGATTAC-AATGATCAAA 1796
|||| |||||||| | ||| || | ||| | || | ||| | |||| | ||||||||||
Sbjct 1691 TTGGTGTTGTTGGAGTAGACGA-CATCT-TCAATATAGTCCTGGATT-CTAATGATCAAA 1747
Query 1797 TGAAGATCCCTTTCCTGAA-GAATCTTA-T--AAAAGAGTTATCACAAG-ACTCTA-CTT 1850
||| |||||| || |||| || | ||| | ||||| | | || ||| || || |
Sbjct 1748 GGAACATCCCTATCTTGAACGA-T-TTAATGGAAAAG-GCAA-CA-AAGGACGCTGGCA- 1801
Query 1851 ACTTGAGG-AACGGTGAAGAAGGAGAAGTAGGAAACCAAGATTTGC-ATATGCCTGGAAT 1908
|| | ||| || || || ||| | ||| | ||||||||||||| || |||| || ||| |
Sbjct 1802 ACCTAAGGGAA-GGCGACGAAAGCGAATTGGGAAACCAAGATT-GCTATATCCCAGGACT 1859
Query 1909 AGTTCCCAAGATGCC-GGGACGGTTTTACGTAT-ACTTTGGGAAACCAATTTACACAGAA 1966
|| || ||||| || ||| ||||| ||| ||| ||||||| |||||||| || || |
Sbjct 1860 TGTACCTAAGATTCCAGGG-CGGTTCTAC-TATTACTTTGGAAAACCAATAGACTTAGCA 1917
Query 1967 GGTAGAG-AGGACGAGCT-AAATGATAAAGAGAAAG-CTCATGAGGTTTACTTGCAGGTC 2023
|||| || || | ||||| ||| || ||||| |||| | || ||| |||||||||| ||
Sbjct 1918 GGTA-AGGAGAAAGAGCTGAAA-GACAAAGA-AAAGGCACAAGAGCTTTACTTGCAAGTA 1974
Query 2024 AAGTCTGAGGTAGAA-AGATGTAT-GACCTATTTGAAGATCAAAAGAGA-AGGTGATCCT 2080
||||||||||| ||| | ||| || | ||||||| || || |||||||| || |||||||
Sbjct 1975 AAGTCTGAGGTCGAACA-ATGCATCG-CCTATTTAAAAATGAAAAGAGAGAG-TGATCCT 2031
Query 2081 TATAGAAACATT-TTAGCGA-GG-TCCCTCTATCACTTCTCACATGGTTTCTCTTCCCAA 2137
|| ||| || || || || | || | | ||||| ||||||||||| |||| ||
Sbjct 2032 TACAGACAC-TTGTT-GCCAAGGATGT-TGTATCAAGCCTCACATGGTTGGTCTTGTGAA 2088
Query 2138 GTCCCAACCTTTGACCTC 2155
||||||| ||||| |||
Sbjct 2089 ATCCCAACGTTTGATCTC 2106
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86502946395
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5