BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41150.1
Length=3245
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493859 jgi|Araly1|493859|fgenesh2_kg.7__3292__AT5G41150.1 4780 0.0
> Ahg493859 jgi|Araly1|493859|fgenesh2_kg.7__3292__AT5G41150.1
Length=3012
Score = 4780 bits (2588), Expect = 0.0
Identities = 2867/3003 (95%), Gaps = 14/3003 (0%)
Strand=Plus/Plus
Query 61 TCAGTTTCTCCGATTTGCGTCGTCGTCTTCTTCAATGGCGCTGAAATATCACCAACAGAT 120
||||||||||||||||||| | ||| ||||||||||||||| |||| ||||||||||||
Sbjct 18 TCAGTTTCTCCGATTTGCG-C--CGTGTTCTTCAATGGCGCTAAAATTTCACCAACAGAT 74
Query 121 CATATCAGACCTTCTCGAGGACTCTAATGGCGGATTATTAATCCTTTCCTCCGGTCTCTC 180
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 75 CATATCAGACCTTCTCGAGGACTCTAATGGCGGATTAGTAATCCTCTCCTCCGGTCTCTC 134
Query 181 CCTCGCTAAATTAATCGCTTCTCTCCTCATCCTTCACTCTCCGTCGCAAGGAACTCTACT 240
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 135 CCTCGCTAAATTAATCGCTTCTCTCCTCATCCTTCACTCTCCCTCTCAAGGAACTCTACT 194
Query 241 TCTCCTCCTCTCCCCCGCCGCTCAATCTCTAAAATCCAGAATCATCCATTACATCTCCTC 300
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 195 TCTCCTCCTCTCCCCCGCCGCTCAATCTCTCAAATCCAGAATCATCCATTGCATCTCCTC 254
Query 301 TCTTGATTCTCCTACTCCGACGGAAATCACCGCAGATCTTCCGGCGAATCAGCGTTACTC 360
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 255 TCTTGATTCTCCTACTCCGACGGAGATCACCGCAGATCTTCCGGCCAATCAGCGTTACTC 314
Query 361 GCTTTACACCTCCGGTTCTCCTTTCTTCATCACGCCGCGGATTCTCATCGTCGATCTGTT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 315 GCTTTACACCTCCGGTTCTCCTTTCTTCATCACGCCGCGGATTCTCATCGTCGATTTATT 374
Query 421 GACTCAACGGATTCCAGTTTCTTCACTCGCCGGAATCTTCATCCTCAATGCTCATTCGA- 479
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 375 GACTCAACGGATTCCAGTTTCTTCACTCGCCGGAATCTTCATTCTCAATGCTCATTC-AC 433
Query 480 TTTCCGAAACCTCCACTGAAGCATTCATTATACGAATTGTCAAATCCCTAAATAGCTCTG 539
||||||||||||||||||||||||||||| | ||||| ||||||||||||||| |||| |
Sbjct 434 TTTCCGAAACCTCCACTGAAGCATTCATTGTGCGAATCGTCAAATCCCTAAATGGCTCCG 493
Query 540 CTTATATACGCGCTTTTTCCGATAGACCGCAAGCTATGGTTTCCGGTTTCGCCAAGACTG 599
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 494 CTTATATACGCGCCTTTTCCGATAGACCGCAAGCTATGGTCTCCGGTTTCGCCAAGACTG 553
Query 600 AACGCACCATGCGTGCTCTCTTCCTCCGTAAAATCCATCTATGGCCAAGGTTTCAGTTGG 659
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 554 AACGCACCATGCGTGCTCTCTTCCTCCGTAGGCTCCATCTTTGGCCAAGGTTTCAGTTGG 613
Query 660 ATGTGTCTCAGGAATTGGAGCGAGAACCACCTGAGGTTGTGGATATTAGGGTTTCGATGT 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 614 ATGTGTCTCAGGAATTGGAGCGAGAACCACCTGAGGTTGTGGATATTAGGGTTTCGATGT 673
Query 720 CGAATTACATGGTGGGAATACAGAAAGCTATCATTGAAGTAATGGATGCTTGTCTCAAGG 779
|||||||||||||||| ||||||||||| || |||||||| ||||| |||||||||||||
Sbjct 674 CGAATTACATGGTGGGGATACAGAAAGCCATAATTGAAGTTATGGACGCTTGTCTCAAGG 733
Query 780 AGATGAAGAAGACTAATAAAGTTGATGTTGATGATTTGACTGTAGAGAGTGGTTTGTTTA 839
||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||
Sbjct 734 AGATGAAGAAGACCAACAAGGTTGATGTTGATGATTTGACTGTAGAGAGTGGTTTGTTTA 793
Query 840 AGTCCTTTGATGAGATTGTGAGGAGGCAGCTTGATCCTATTTGGCATACTTTGGGGAAAA 899
|||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||| |
Sbjct 794 AGTCCTTTGATGAGATTGTGCGGAGGCAGCTTGACCCTATTTGGCATACTTTAGGGAAGA 853
Query 900 GGACAAAACAGCTTGTTTCTGATTTGAAGACTTTAAGGAAGTTGCTTGATTATCTTGTTA 959
| || |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 854 GAACCAAACAGCTTGTTTCTGATTTGAAGACTTTAAGGAAGCTGCTTGACTATCTTGTTA 913
Query 960 GGTATGATGCTGTGAGTTTTCTCAAGTTCTTGGATACACTAAGGGTATCAGAGAGCTATC 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 914 GGTATGATGCTGTGAGTTTTCTCAAGTTCTTGGATACACTAAGGGTATCAGAGAGCTATC 973
Query 1020 GGTCTGTTTGGTTATTTGCAGAGTCCAGCTATAAAATATTTGATTTTGCAAAGAAACGAG 1079
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 974 GGTCTGTTTGGTTATTTGCAGAGTCCAGTTATAAAATATTTGATTTTGCAAAGAAACGAG 1033
Query 1080 TGTATCGTCTCGTGAAGGCAAGTGATGTCAAGTCAAAAGAACATGTTAAGAATAAGAGTG 1139
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1034 TGTATCGTCTCGTGAAGGCAAGTGATGTCAAGTCAAAGGAACTTGTTAAGAATAAGAGTG 1093
Query 1140 GTAAAAAGAGAAATTCGAAGGGCGAAACTGACTCTGTAGAAGCAGTTGGTGGGGAAACGG 1199
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1094 GTAAAAAGAGAAAGTCGAAGGGCGAAAATGACTCTGTAGAAGCAGTTGGTGGGGAAACGG 1153
Query 1200 CAACAAATGTGGCTACTGGCGTTGTTGTAGAAGAAGTTCTGGAAGAGGCACCAAAATGGA 1259
|||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||
Sbjct 1154 CAACAAATGTGGCTACTGGCGTTGTTGTTGAAGAAGTTCTTGAAGAGGCGCCAAAATGGA 1213
Query 1260 AAGTCTTACGTGAAATTTTAGAGGAGACACAAGAAGAAAGACTAAAGCAGGCTTTTTCTG 1319
||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 1214 AAGTCTTACGTGAGATTTTAGAAGAGACACAAGAAGAAAGAAAAAAGCAGGCTTTTTCTG 1273
Query 1320 AGGAAGATAACAGTGACAACAATGGAATAGTTCTTGTGGCTTGCAAAGATGAACGGTCCT 1379
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1274 AGGAAGACAACAGTGACAACAATGGAATAGTTCTTGTGGCTTGCAAAGATGAGCGGTCCT 1333
Query 1380 GCATGCAGCTTGAAGATTGCATCACAAACAATCCACAGAAGGTAATGCGGGAAGAATGGG 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1334 GCATGCAGCTTGAAGATTGCATCACAAACAATCCACAGAAGGTAATGCGGGAAGAATGGG 1393
Query 1440 AAATGTACCTGCTGAGCAAAATTGAGCTCCGCAGTATGCAGACACCGCAAAAGAAGAAAC 1499
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1394 AAATGTACCTGCTGAGCAAAATCGAACTCCGCAGTATGCAGACACCGCAAAAGAAGAAAC 1453
Query 1500 AAAAGACTCCCAAGGGTTTTGGGATTCTTGATGGAGTTGTTCCGGTAACTACAATACAGA 1559
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1454 AAAAAACTCCCAAGGGTTTTGGGATTCTTGATGGAGTTGTTCCGGTAACTACAATACAGA 1513
Query 1560 ACTCGGAAGGTAGCAGTGTTGGCAGACAAGAGCATGAGGCTCTTATGGCTGCTGCGTCTT 1619
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1514 ACTCGGAAGGTAGCAGTGTTGGTAGACAAGAGCATGAGGCTCTTATGGCTGCTGCGTCTT 1573
Query 1620 CTATTCGCAAGCTAGGAAAGACAACAGATATGGCTTCT-GGAAATAACAACCCAGAGCCT 1678
||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||
Sbjct 1574 CTATTCGCAAGCTAGGAAAGACAACGGATATGGCT-CTTGGAAATAACAACCCAGAGCCT 1632
Query 1679 CATGTTGATAAGGCTTCGTGTACCAAAGGAAAAGCTAAAAAGGATCCAACAAGTCTCCGG 1738
|||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1633 CATGTTGAAAAGGCTTCATGTACCAAAGGAAAAGCTAAAAAGGATTCAACAAGTCTCCGG 1692
Query 1739 AGATCCTTAAGAAGTTGCAATAAGAAAACG-ACGAACAGTAAACCTGAAATCTTACCAGG 1797
|||||| ||||||||||||||||||||| | | ||||||||||||||||||||| ||||
Sbjct 1693 AGATCCATAAGAAGTTGCAATAAGAAAAAGGAA-AACAGTAAACCTGAAATCTTAACAGG 1751
Query 1798 CCCAGAGAATGAAGAAAAAGCCAATGAAGCTAGCACGTCAG-CCCCTCAAGAAGCCAATG 1856
||||||||||||||||||||||| |||||||||||| |||| |||| | ||||| ||||
Sbjct 1752 CCCAGAGAATGAAGAAAAAGCCAGTGAAGCTAGCACATCAGGCCCC-CGGGAAGCTAATG 1810
Query 1857 CTGTTCGCCCCAGCGGTGCTAAAAAGCTACCGCCTGTGCATTTTTATGCCTTAGAAAGCG 1916
||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1811 TTGTTCACCCCAGTAGTGCTAAAAAGCTACCGCCTGTGCATTTTTATGCCTTAGAAAGTG 1870
Query 1917 ATCAACCTATACTAGATATCTTGAAACCCTCTGTGATCATTGTCTACCATCCTGACATGG 1976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1871 ATCAACCTATACTAGATATCTTGAAACCCTCTGTGATCATTGTCTACCATCCTGACATGG 1930
Query 1977 GTTTTGTCAGAGAACTTGAGGTTTACAAAGCAGAGAACCCTCTCAGAAAGCTGAAAGTTT 2036
||||||| |||||| ||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1931 GTTTTGTTAGAGAAATTGAGGTGTACAAAGCAGAGAACCCTCTGAGAAAGCTGAAAGTTT 1990
Query 2037 ATTTTATTTTCTATGATGAGTCCACAGAAGTGCAGAAGTTTGAAGCAAGCATACGTCGAG 2096
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1991 ATTTTCTTTTCTATGATGAGTCCACAGAAGTGCAGAAGTTTGAAGCAAGCATACGTCGAG 2050
Query 2097 AAAATGAAGCGTTTGAATCATTGATCAGGCAAAAGTCTTCGATGATTATTCCCGTTGATC 2156
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 2051 AAAATGAAGCGTTTGAATCATTGATCAGGCAGAAGTCTTCGATGATAATTCCCGTTGATC 2110
Query 2157 AGGATGGGCTCTGCATGGGGTCGAATTCTTCTACAGAGTTTCCAGCTTCAAGTACACAAA 2216
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2111 AGGATGGGCTCGGCATGGGGTCGAATTCTTCTACAGAGTTTCCAGCTTCAAGTACTCAAA 2170
Query 2217 ACTCATTAACCCGAAAAGCAGGCGGAAGAAAGGAACTGGAGAAAGAGACACAGGTTATAG 2276
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2171 ACTCATTAACCCGAAAAGCAGGCGGAAGAAAGGAAATGGAGAAAGAGACACAGGTTATAG 2230
Query 2277 TTGACATGAGGGAGTTCATGAGCAGTCTACCAAATGTTCTTCACCAGAAAGGCATGAAGA 2336
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2231 TTGACATGAGGGAGTTCATGAGCAGCCTACCAAATGTTCTTCACCAGAAAGGCATGAAGA 2290
Query 2337 TAATACCAGTTACACTAGAGGTCGGCGACTATATTCTATCTCCTTCAATATGCGTAGAGA 2396
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 2291 TAATACCAGTTACACTAGAGGTCGGCGACTATATCCTATCTCCTTCAATATGCGTGGAGA 2350
Query 2397 GAAAGAGTATTCAAGATCTTTTCCAGAGCTTCACATCAGGTCGTTTATTTCACCAAGTCG 2456
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2351 GAAAGAGCATTCAAGATCTTTTCCAGAGCTTCACATCAGGTCGTTTATTTCACCAAGTCG 2410
Query 2457 AAATGATGTCCCGTTATTACAGAATACCAGTTCTTCTGATCGAGTTCTCACAAGACAAAA 2516
|||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||
Sbjct 2411 AAATGATGTCCCGTTATTACAGAATACCCGTTCTTCTCATCGAGTTCTCTCAAGACAAAA 2470
Query 2517 GCTTCTCCTTTCAGTCTTCGAGTGATATATCAGATGATGTGACTCCATATAACATCATAT 2576
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2471 GCTTCTCCTTTCAGTCTGCGAGTGATATATCAGATGATGTGACTCCATATAACATCATAT 2530
Query 2577 CAAAACTATCATTGCTAGTTCTGCATTTTCCTCGGTTAAGGTTATTGTGGTCTCGAAGTC 2636
||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 2531 CAAAACTATCATTGCTAGTTCTGCATTTTCCTCGGTTAAGGATATTATGGTCTCGAAGTT 2590
Query 2637 TACATGCAACCGCAGAAATCTTTACTACCTTAAAATCCAACCAAGACGAGCCTGACGAGA 2696
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 2591 TACATGCAACCGCAGAAATCTTCACTACCTTAAAATCCAACCAAGACGAGCCCGACGAGA 2650
Query 2697 CTCGAGCAATAAGAGTTGGTGTGCCTTCAGAAGAAGGTATCATAGAAAATGACATCAGAG 2756
| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2651 CCCGAGCAGTGAGAGTTGGTGTGCCTTCAGAAGAAGGTATCATAGAAAATGACATCAGAG 2710
Query 2757 CCGAGAACTATAACACATCTGCAGTTGAGTTTCTGAGAAGGCTTCCTGGAGTTTCGGATG 2816
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| || |
Sbjct 2711 CCGAGAACTATAACACATCAGCAGTAGAGTTTCTGAGAAGGCTTCCTGGAGTTTCAGACG 2770
Query 2817 CGAATTACAGATCGATTATGGAGAAATGTAAGAGTTTGGCTGAGCTCGCGTCTTTGCCTG 2876
| || || ||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2771 CAAACTATAGAACGATAATGGAGAAATGTAAGAGTTTGGCTGAGCTCGCGTCTTTGCCTG 2830
Query 2877 TTGAGACATTAGCAGAACTCATGGGTGGTCACAAAGTTGCTAAAAGTCTCAGAGAGTTTC 2936
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2831 TGGAGACATTAGCAGAACTCATGGGTGGTCACAAAGTTGCTAAAAGTCTCAGAGAGTTTC 2890
Query 2937 TTGACGCCAAGTATCCGACTTTGCTATGAAGAGAGAGGTAACACTTATT-AATTTAGAAG 2995
||||||| ||||||||||||||||||| || |||||||||||||||||| ||| ||||||
Sbjct 2891 TTGACGCTAAGTATCCGACTTTGCTATAAAAAGAGAGGTAACACTTATTTAATGTAGAAG 2950
Query 2996 CTCATTCACAAAGCTGCTTAGTTCTTTCTTGTTCATCTGCT-ACGTTTGTTGTAGATTAG 3054
|||| |||||||||||||||||| ||||||||||||||| | || |||| | ||||||||
Sbjct 2951 CTCAATCACAAAGCTGCTTAGTTATTTCTTGTTCATCTG-TGACATTTGATATAGATTAG 3009
Query 3055 ATT 3057
|||
Sbjct 3010 ATT 3012
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 122469269914
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5