BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41170.1
Length=2099
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947602 jgi|Araly1|947602|scaffold_703831.1 2488 0.0
Ahg479138 jgi|Araly1|479138|fgenesh2_kg.3__1839__AT3G16710.1 791 0.0
Ahg475062 jgi|Araly1|475062|fgenesh2_kg.2__192__AT1G63320.1 130 4e-29
> Ahg947602 jgi|Araly1|947602|scaffold_703831.1
Length=1621
Score = 2488 bits (1347), Expect = 0.0
Identities = 1537/1629 (94%), Gaps = 12/1629 (1%)
Strand=Plus/Plus
Query 121 TTTCGTCTGGGATTTGCGTTAATGGCGATGAGATTTTTTCAACTTCACCGAAATCGTCTT 180
|||||||||||| ||||||||||||||||||||||| |||| ||||||||| | ||||
Sbjct 1 TTTCGTCTGGGA-TTGCGTTAATGGCGATGAGATTTCTTCATCTTCACCGAGA---TCTT 56
Query 181 GTGAAAGGTAATTCTGGAAAAGCTCTCTCCTTTAGCCGCCTTTTAGATCTTAGTTTCTGG 240
|| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 57 GTAAAAGGTAATTCTGGGAAAGCTCTCTCCTTTAGCCGCCTTTTAGGTCTTAGTTTCTGG 116
Query 241 GTTCGAGCTTTTTGTAATTACCGAGAGATTTTGAGAAATGGTCTTCACTCTCTTCAGTTT 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 117 GTTCGAGCTTTTTGTAATTACCGAGAGATTTTGAGAAATGGACTTCACTCTCTTCAGTTT 176
Query 301 AATGAAGCTCTCGATTTGTTCACTCACATGGTTGAGTCTCGTCCTCTTCCTTCAATTATC 360
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 177 AATGAAGCTCTTGATTTGTTCAGTCACATGGTTGAGTCTCGTCCTCTTCCTTCAATTATC 236
Query 361 GATTTCACTAAG-TTATTGAATGTTATTGCCAAAATGAAGAAGTTTGATGTTGTGATCAA 419
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 GATTTCACT-AGATTATTGAATGTTATTGCCAAAATGAAGAAGTTTGATGTTGTGATCAA 295
Query 420 TCTCTGCGACCATCTGCAGATAATGGGAGTTTC-ACATGATCTCTATACTTGCAATCTTT 478
||| ||| | ||| |||| |||||||||||||| | |||||||||||||||| |||||||
Sbjct 296 TCTGTGCAAGCATTTGCAAATAATGGGAGTTTCGA-ATGATCTCTATACTTGTAATCTTT 354
Query 479 TGATGAATTGTTTCTGCCAATCTTCTCAGCCTTATCTTGCCTCATCTTTTCTTGGGAAGA 538
|||||||||||||||| |||||||||||||||| |||||| || |||||||||||||||
Sbjct 355 TGATGAATTGTTTCTGTCAATCTTCTCAGCCTTGTCTTGCTTCTTCTTTTCTTGGGAAGC 414
Query 539 TGATGAAACTTGGTTTTGAGCCTGATATTGTCACGTTTACTTCTCTGATCAATGGGTTCT 598
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 415 TGATGAAACTTGGTTTTGAGCCTGACATTTTCACGTTTACTTCTCTGATCAATGGGTTCT 474
Query 599 GTCTCGGGAATAGAATGGAGGAGGCTATGTCTATGGTGAATCAGATGGTGGAGATGGGGA 658
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 475 GTCTCGGGAATAGAATTGAGGAGGCCATGTCTATGGTGAATCAGATGGTGGAGATGGGGA 534
Query 659 TTAAACCTGATGTTGTAATGTATACAACAATCATTGATAGTCTTTGCAAAAACGGGCATG 718
||||||| |||||||||||||||||||||||||| ||||||||||| |||||||| ||||
Sbjct 535 TTAAACCCGATGTTGTAATGTATACAACAATCATCGATAGTCTTTGTAAAAACGGACATG 594
Query 719 TGAATTACGCGTTGAGCCTTTTCGATCAAATGGAAAACTACGGGATTAGACCGGATGTTG 778
|| || ||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 595 TGGATAACGCGTTGAGCCTTTTCAATCAAATGGAAAACTATGGGATTAGACCGGATGTTG 654
Query 779 TTATGTACACCTCTCTCGTGAACGGTCTTTGTAACTCTGGTAGATGGAGAGATGCTGATT 838
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 655 TTATGTACACCTCTCTCGTCATCGGTCTTTGTAACTCTGGTAGATGGAGAGATGCTGATC 714
Query 839 CATTGCTGAGGGGTATGACGAAGAGGAAAATCAAACCTGATGTAATCACTTTCAATGCAT 898
||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 715 CATTGCTCAGGGGTATGATGAAGAGGAAAATCAAAGCTGATGTAATCACTTTCAATGCAT 774
Query 899 TGATCGATGCGTTTGTGAAAGAAGGAAAGTTTTTGGATGCTGAAGAATTGTACAATGAGA 958
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 775 TGATCGATGCGTTTGTGAAAGAAGGAAAGCTTTTGGATGCTAAAGAATTGTACAATGAGA 834
Query 959 TGATTCGTATGTCTATAGCTCCTAATATTTTCACCTATACTTCATTGATCAATGGGTTTT 1018
||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 835 TGATTCGAATGTCTATAGCTCCTAATATTTTCACTTATACTTCATTGATCAATGGGCTTT 894
Query 1019 GCATGGAAGGTTG-TGTAGATGAGGCCAGACAAATGTTTTATTTGATGGAAACCAAGGGT 1077
||||||| ||| | | ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 895 GCATGGAGGGTCGCT-TAGATGAGGCCAGACAAATGTTTCATTTGATGGAAACCAAGGGT 953
Query 1078 TGTTTTCCAGATGTAGTGGCTTATACTTCTCTCATAAACGGGTTTTGCAAGTGTAAGAAG 1137
||||||||||| |||||||||||||| ||||||||||| ||||||| |||||||||||||
Sbjct 954 TGTTTTCCAGACGTAGTGGCTTATACCTCTCTCATAAATGGGTTTTACAAGTGTAAGAAG 1013
Query 1138 GTAGATGATGCGATGAAAATCTTCTACGAGATGTCCCAAAAAGGATTGACTGGGAACACT 1197
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 GTAGAGGATGCGATGAAAATCTTCTACGAGATGTCCCAAAAAGGATTGACTGGGAACACA 1073
Query 1198 ATCACTTACACTACTCTTATCCAAGGTTTTGGTCAAGTGGGCAAACCTAATGTCGCCCAA 1257
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1074 ATCACTTACACTACTCTTATCCAAGGTTTTGGTCTAGTGGGCAAACCTAATGTCGCCCAA 1133
Query 1258 GAAGTTTTTAGTCATATGGTTTCTCGTGGCGTGCCTCCCAATATTAGGACCTATAATGTT 1317
|||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1134 GAAGTTTTCAGTCATATGGTTTCTCGTGGCGTGCCTCCCAATATTAGGACTTACAATGTA 1193
Query 1318 TTGTTACATTGTCTATGTTATAACGGGAAGGTAAAGAAAGCGTTGATGATATTTGAGGAT 1377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 TTGTTACATTGTCTATGTTATAACGGGAAGGTAAAGAAAGCGTTGATGATATTTGAGGAT 1253
Query 1378 ATGCAAAAGAGAGAAATGGATGGTGTCGC-TCCCAATATTTGGACTTACAACGTCTTGTT 1436
||||||||||||||||| |||||||| || |||||||||| |||||||||| || |||||
Sbjct 1254 ATGCAAAAGAGAGAAATAGATGGTGT-GCCTCCCAATATTAGGACTTACAATGTATTGTT 1312
Query 1437 ACATGGTCTATGTTATAATGGGAAGCTAGAGAAAGCCTTGATGGTATTCGAGGATATGCG 1496
|||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1313 ACATTGTCTATGTTATAATGGGAAGCTAGAGAAAGTGTTGATGGTGTTCGAGGATATGCA 1372
Query 1497 AAAGAGAGAGATGGATATTGGAATTATTACATATACCATCATCATTCAAGGGATGTGCAA 1556
||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1373 AAAGAGAGATATGGATATTGGTATTATTACATATACAATCATCATTCAAGGGATGTGCAA 1432
Query 1557 GGCTGGTAAAGTGAAAAATGCTGTTAATTTATTTTGTAGCCTTCCTTCAAAAGGAGTGAA 1616
||| |||||||||||| ||||| ||||||||||||||||||| ||||| |||||||||||
Sbjct 1433 GGCCGGTAAAGTGAAAGATGCTCTTAATTTATTTTGTAGCCTCCCTTCCAAAGGAGTGAA 1492
Query 1617 GCCTAATGTTGTAACATATACTACAATGATATCAGGATTGTTTAGGGAAGGGTTAAAGCA 1676
||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 1493 GCCAAATGTTGTAACATACACTACAATGATATCAGGATTGTTTAGGGAAGGGTTAATGCT 1552
Query 1677 TGAAGCTCATGTGTTGTTTAGGAAAATGAAAGAAGATGGGGTTTCATAATTAGGTGACAC 1736
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1553 TGAAGCTCATGTGTTGTTTAGAAAAATGAAAGAAGATGGGGTTTCATAATTAGGTGACAC 1612
Query 1737 CATAGCATA 1745
||||||||
Sbjct 1613 TATAGCATA 1621
> Ahg479138 jgi|Araly1|479138|fgenesh2_kg.3__1839__AT3G16710.1
Length=1513
Score = 791 bits (428), Expect = 0.0
Identities = 943/1189 (79%), Gaps = 46/1189 (4%)
Strand=Plus/Plus
Query 233 GTTTCTGGGTTCGAGCTTTTTGTAATTACC-GAGAGATTTTGAGAAATGGTCTTCACTCT 291
|||||||| |||||||||| | ||| |||| || ||||||||||||||||||||||| |
Sbjct 122 GTTTCTGGATTCGAGCTTTCTCTAACTACCGGA-AGATTTTGAGAAATGGTCTTCACAAT 180
Query 292 CTTCAGTTTAATGAAGCTCTCGATTTGTTCACTCACATGGTTGAGTCTCGTCCTCTTCCT 351
||||||||||| || ||||| ||||||||||||| |||||| | |||||||||||||||
Sbjct 181 CTTCAGTTTAACGAGGCTCTTGATTTGTTCACTCGTATGGTTCACTCTCGTCCTCTTCCT 240
Query 352 TCAATTATCGATTTCACTAAGTTATTGAATGTTATTGCCAAA-ATGAAGAAGTTTGATGT 410
|||||| |||||||||||| | | |||| |||||| | |||| ||||||| |||||||||
Sbjct 241 TCAATTGTCGATTTCACTAGGCTGTTGAGTGTTATCG-CAAAGATGAAGAGGTTTGATGT 299
Query 411 TGTGATCAATCTCTGCGACCATCTGCAGATAATGGGAGTTTCACATGATCTCTATACTTG 470
||||||| ||| | ||| || |||| || ||||| |||||| || | | ||||| ||
Sbjct 300 TGTGATCTCTCTATTCGAGCAAATGCAAATTCTGGGAATTTCACCTGTTTTGTATACCTG 359
Query 471 CAATCT-TTTGATGAATTGT-TTCTGCCAATCTTCTCAGCCTTATCTTGCCTCATCTTTT 528
|||| | || ||||||||| || || | ||||||||| |||| || ||| || | ||||
Sbjct 360 CAATATCGTT-ATGAATTGTGTT-TGTCGATCTTCTCAACCTTGTCGTGCTTCGTGTTTT 417
Query 529 CTTGGGAAGATGATGAAACTTGGTTTTGAGCCTGATATT-GTCACGTTTACTTCTCTGAT 587
||||||||||||||||||||||||||||| ||||| || |||||||||||||||||| |
Sbjct 418 CTTGGGAAGATGATGAAACTTGGTTTTGAACCTGAC-TTAGTCACGTTTACTTCTCTGCT 476
Query 588 -CAATGGGTTCTGTCTCG-GGAATAGAATGGAGGAGGCTAT-GTCTATGGT-GAATCAGA 643
|| ||| | ||||| | |||||||||| ||||| ||| | | || || | || |||||
Sbjct 477 TCA-TGGATACTGTCA-GTGGAATAGAATTGAGGATGCTTTAG-CTTTGTTTGA-TCAGA 532
Query 644 TGGT-GGAGATGGGGATTAA-ACCTGATGTTGTAATGTATACAACAATCATTGA-TAGTC 700
| || ||| ||||| ||| | |||| ||||||| | || || ||| | ||| | | |||
Sbjct 533 TTGTTGGA-ATGGG-ATTTAGACCTAATGTTGTGACATACACTACATTGATTCACT-GTC 589
Query 701 TTTGCAAAAACGGGCATGTGAATTACGCGTTG-AGCCTTTTCGATCAAATGGAAAACTAC 759
|||| |||||| | ||| |||| ||||| || || |||| | || |||| | ||
Sbjct 590 TTTGTAAAAACCGACATTTGAACCACGCGGTGGAGATTTTTA-ACCAGATGGGGGA-TAA 647
Query 760 -GGGATTAGACCGGATGTTGTTATGTACACCTCTCTCGTGAA-CGGTCTTTGT-A-ACTC 815
|||||||||||| ||||||||| || | |||||| || || |||| |||| | | |
Sbjct 648 TGGGATTAGACCGAATGTTGTTACCTATAACTCTCTTGT-AAGCGGTTTTTGCGAGA-T- 704
Query 816 TGGTAGATGGAGAGATGCTGATT--CATTGCTGAGGGGTATGACGAAGAGGAAAAT-CAA 872
|||||||||||| ||||||| || | || ||||||| ||||| ||||||| ||| |||
Sbjct 705 TGGTAGATGGAGCGATGCTGCTTGGC-TT-CTGAGGGATATGATGAAGAGGGGAATTCAA 762
Query 873 ACCTGATGTAATCACTTTCAATGCATTGATCGATGCGTTTGTGAAAGAAGGAAAGTTTTT 932
||| |||| |||||||||| ||| ||||||||||||||||| |||| ||| ||| | |
Sbjct 763 -CCTAATGTCATCACTTTCACTGCTTTGATCGATGCGTTTGTTAAAGTAGGGAAGATCAT 821
Query 933 GGATGCTGAAGAATTGTACAATGAGATGATTCGTATGTCTATAGCTCCTAATATTTTCAC 992
||| ||| ||||| ||||||| | |||||| | |||||| ||| |||| || |||||||
Sbjct 822 GGAGGCTAAAGAACTGTACAAGGTGATGATCCAAATGTCTGTAGATCCTGATGTTTTCAC 881
Query 993 CTATACTTCATTGATCAATGGGTTTTGCATGGAAGGTTGTGTAGATGAGGCCAGACAAAT 1052
|| |||||| ||||||||||| |||||| | | ||| |||||||||| || |||||
Sbjct 882 TTACACTTCACTGATCAATGGGCTTTGCACGTACGGTCACCTAGATGAGGCTAGGCAAAT 941
Query 1053 GTTTTATTTGATGGAAACCAAGGGTTGTTTTCCAGATGTAGTGGCTTATACTTCTCTCAT 1112
|||||||||||| |||| ||| ||||| | ||| ||| |||| |||||||| |||||||
Sbjct 942 GTTTTATTTGATAGAAAGCAATGGTTGCTACCCAAATGAAGTGACTTATACTACTCTCAT 1001
Query 1113 AAACGGGTTTTGCAAGTGTAAGAAGGTAGATGATGCGATGAAAATCTTCTACGAGATGTC 1172
| | || |||||||||| ||||| |||||| || | || |||||||||||| ||||||||
Sbjct 1002 ACATGGATTTTGCAAGTCTAAGAGGGTAGAGGACGGGACGAAAATCTTCTATGAGATGTC 1061
Query 1173 CCAAAAAGGATTGACTGGGAA-CACTATCACTTACACTACTCTTATCCAAGGTT-TTGGT 1230
|| |||||||| | | | || ||| ||||||||||| ||||||||| |||| ||| |
Sbjct 1062 CCGGAAAGGATT-AGTTGCAAACACAATCACTTACACCGTTCTTATCCAGGGTTATTG-T 1119
Query 1231 CAAGTGGGCAAACCTAATGTCGCCCAAGAAGTTTTTAGTCATATGGTTTCTCGTGGCGTG 1290
| ||||||| || |||| |||||||||||||| | ||| |||| |||||| | | |
Sbjct 1120 CTGGTGGGCAGGCCCGATGTTGCCCAAGAAGTTTTCAATCAGATGGGTTCTCGCCGTGCG 1179
Query 1291 CCTCCCAATATTAGGACCTATAATGTTTTGTTACATTGTCTATGTTATAACGGGAAGGTA 1350
||||| ||||||| ||||| || ||||||||| || |||| |||||||| ||| | |||
Sbjct 1180 CCTCCGGATATTAGAACCTACAACGTTTTGTTAGATGGTCTTTGTTATAATGGGTACGTA 1239
Query 1351 AAGAAAG-CGTTGATGATATTTGAGGATATGCAAAAGAGAGAAATGGAT 1398
| |||| | ||||||||||| | | |||| ||||| || ||||||
Sbjct 1240 GA-AAAGGCATTGATGATATTCAAATACATGCGGAAGAGGGAGATGGAT 1287
> Ahg475062 jgi|Araly1|475062|fgenesh2_kg.2__192__AT1G63320.1
Length=568
Score = 130 bits (70), Expect = 4e-29
Identities = 112/132 (85%), Gaps = 4/132 (3%)
Strand=Plus/Plus
Query 1586 TATTTTGTAGCCT--TCCTTCAAAAGGAGTGAAGCCTAATGTTGTAACATATACTACAAT 1643
||||||||||||| |||| ||||||||||||||||||||||||||||| | ||||||
Sbjct 245 TATTTTGTAGCCTCAGCCTT--AAAGGAGTGAAGCCTAATGTTGTAACATACAATACAAT 302
Query 1644 GATATCAGGATTGTTTAGGGAAGGGTTAAAGCATGAAGCTCATGTGTTGTTTAGGAAAAT 1703
||| ||||| |||| |||| |||| ||||| || |||||| ||| |||| | | |||||
Sbjct 303 GATCTCAGGCTTGTGTAGGAAAGGTTTAAACCAGGAAGCTTATGCGTTGCTAAAAAAAAT 362
Query 1704 GAAAGAAGATGG 1715
||||||||||||
Sbjct 363 GAAAGAAGATGG 374
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78961077885
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5