BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41180.1
Length=2367
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947601 jgi|Araly1|947601|scaffold_703830.1 3221 0.0
Ahg475009 jgi|Araly1|475009|fgenesh2_kg.2__139__AT1G63430.1 833 0.0
> Ahg947601 jgi|Araly1|947601|scaffold_703830.1
Length=2033
Score = 3221 bits (1744), Expect = 0.0
Identities = 1944/2041 (95%), Gaps = 11/2041 (1%)
Strand=Plus/Plus
Query 153 TTTGAGCAAGGAGGAAAAAAGAATGAGACTTTACTTATCTTCAACGATGCAGCTTTCTCT 212
||||||| |||| |||||||||||||||||||||||||||||| | ||||||||| ||||
Sbjct 1 TTTGAGCTAGGA-GAAAAAAGAATGAGACTTTACTTATCTTCAGCTATGCAGCTTACTCT 59
Query 213 TATGAGTCTTGTTCTAGGGTTCCTCTTTGTTTCCTGTGACGCGTTTGCCTCTAAAGAAGT 272
| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 60 TGTGAGTCTTGTTTTAGGGTTCCTCTTTGTTTCCTGTGACGCTTTTGCCTCTAAAGAAGT 119
Query 273 TGAAGCAGTTAGAAGATTCAAGGAAGCCATTTATAAGGACCCATTGCTAGTTATGTCTAA 332
||||||| |||| |||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 120 TGAAGCACTTAGTAGATTCAAGGAAGCTATCTATAAGGACCCATTGCTAGTTATGTCTAA 179
Query 333 TTGGAATGTCCCCAATTTGAGTCCTTGTGATTGGAATGGCATTAAATGTTCTCCATCTAA 392
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TTGGAATGTCCCCAATTTAAGTCCTTGTGATTGGAATGGCATTAAATGTTCTCCATCTAA 239
Query 393 GGATCACATTATCAAGATAAATATATCGGGGACATCGATGAGAGGGTTTCTTGTGCCAGA 452
|||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 240 GGATCATGTTATCAAGATAAATATATCGGCGACATCGATGAGAGGGTTTCTTGTGGCAGA 299
Query 453 ACTTGGTCAAATAACCTACTTGCAAGAACTGATCCTGCGTGGGAACATT-CTAATGGGGA 511
| ||||||| |||||||||||||||||||||||| ||||||||||| || ||||||||||
Sbjct 300 AATTGGTCAGATAACCTACTTGCAAGAACTGATCTTGCGTGGGAAC-TTGCTAATGGGGA 358
Query 512 CAATACCAAAGGAGATAGGAAAGTTAAAGAAACTCAAGATCTTAGACCTGGGAAACAATC 571
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 359 CAATACCAAAGGAGATAGGAAAATTAGAGAAACTCAAGATCTTAGACCTGGGAAACAATC 418
Query 572 ATTTGACAGGACCGATTCCAGCAGAGATCGGGAAATTGTCAAGGATTAAGACAATAAACC 631
||||||||||||||||||| || |||||||||||||||||||| |||| |||||||||||
Sbjct 419 ATTTGACAGGACCGATTCCTGCTGAGATCGGGAAATTGTCAAGCATTAGGACAATAAACC 478
Query 632 TTCAGTCCAATGGTTTAATAGGAAAGTTACCTCCAGAGATTGGAAACTTGAAGCACCTTA 691
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 479 TTCAGTCCAATGGTTTAATAGGAAAGTTACCACCAGAGATTGGAAACTTGAAGCACCTTA 538
Query 692 AAGAACTTCTTATTGGCAGGAATAGGCTTCGAGGAAGTATTCCTATTGCCGCGAAAACAT 751
||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||
Sbjct 539 AAGAACTTCTTATTGACCGGAATAGGCTTCGAGGAAGTATTCCTATTGCCGCAAAAACAT 598
Query 752 CAAAAAAGTATGCTTCAAATCCAAGTGCAAACATCAGTGGTTTGTGCAAGTCTTCTCTAT 811
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 599 CAAAAAAGTATGCTTCAAATCTAAGTGCAAACATCAGTGGTTTGTGCAAGTCTTCTCTAT 658
Query 812 TTAAAGTGGCAGATTTCTCTTACAACTTTTTCGAGGGAAGAGTTCCG-AGTTGCTTGGAT 870
| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 659 TGAAAGTGGCAGATTTCTCTTACAACTTTTTCGAGGGAAGAGTTCCGCA-TTGCTTGGAT 717
Query 871 TACCTCCCAATAACGAGCTTTCAAGGAAACTGCATGAAAAC-CATGGATGTTAAGCAGAG 929
||||| |||| |||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 718 TACCTTCCAAGAACGAGCTTTCAAGGAAACTGCATGAAAACTGA-GGATGTTAAGCAGAG 776
Query 930 ACCTCTTTCAGAATGTGCTCGCTTAGCTGTAACCGTGGCCAAGAAGAAGCATCGAGCATC 989
|||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||
Sbjct 777 ACCTCTTTCAGAATGTGCTCACTTAGCTGCAACCGTGGCCAAGAAGAAGCATCGCGCATC 836
Query 990 GAGACAAACATGGCTTCGGAATTTTGAGATAGTCACGGGATCATCAGTTGGCTTGCTCTT 1049
|| | |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 837 ---ACCTATATGGCTTCGGAATTTTGAGATAGTCACGGGATCATCAGTTGGTTTGCTCTT 893
Query 1050 TCTAGTCGTAATGTTCTCTGCATGTAGCTTGTGCAAAATAAAGCGCTCTCTCATCGTTCC 1109
|||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 894 TCTAGTTATAATTTTCTCTGCATGTAGCTTGTGCAACATAAAGCGCTCTCTCATCGTTCC 953
Query 1110 CTGGAAGAAATCTGCAAGTGAAAAGGAGAAGTTCACGGTCTACGTTGATTCTGAAATGCT 1169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 CTGGAAGAAATCTGCAAGTGAAAAGGAGAAGTTCACGGTCTACGTTGATTCTGAAATGCT 1013
Query 1170 GAAGGATGTTTCAAGATATACAAGACAAGAGCTAGAAGTAGCATGTGAAGACTTCAGCAA 1229
||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||
Sbjct 1014 GAAGGATGTTTCAAGATGTACAAGACAAGAGCTAGAAGTGGCGTGTGAAGACTTCAGCAA 1073
Query 1230 CATCATTGATTCTAGTGCAGAGAGTCAGATTTACAAAGGAACGATCAAAGGCGGGACTGA 1289
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1074 CATCATTGATTCTTGTGCAGATAGTCAGATTTACAAAGGAACGATCAAAGGCGGGACTGA 1133
Query 1290 GATCGCGGTTATCTCTCTCTGCGTTAAAGAAGAAAATTGGACTGGATATCTTGAGCTTAA 1349
||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 1134 GATCGCGGTGATCTCTCTCTGCGTTAAAGAAGAAGATTGGACCGGATATCTTGAGCTTAA 1193
Query 1350 TTTCCAGAGAGAGGTTGCGGCTTTGGCTAGATTAAACCATGAGAATGCGGGGAAATTACT 1409
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1194 TTTCCAGAGAGAGGTTGCGGATTTGGCTAGATTAAACCATGAGAATGCGGGGAAATTACT 1253
Query 1410 GGGATACTGTAAAGAGAGTACACCGTTCACAAGAATGCTTGTGTTTGAGTATGCATCAAA 1469
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 GGGATTCTGTAAAGAGAGTACACCGTTCACAAGAATGCTTGTGTTTGAGTATGCATCAAA 1313
Query 1470 CGGGACACTATACGACCATCTCCACTATGCGGACGGGAGTTTAGTATCGTGGGCAAAACG 1529
||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||
Sbjct 1314 CGGGACACTATACGACCATCTCCACTATGGGGACGGGAGTTTAGCATCGTGGGCGAAACG 1373
Query 1530 CATGAAAATTGTTATAGGCATCGCACGTGGTCTCAAGTACCTTCATACTGAACTCCATCC 1589
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 1374 CATGAAAATCGTTATAGGCATCGGACGTGGTCTCAAGTACCTTCATACTGAACTCGATCC 1433
Query 1590 TCCATTTACAGTCTCTGAGTTGAGCTCAACTGCAGTGTATCTCACTGAAGATTTTACTCC 1649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1434 TCCATTTACAGTCTCTGAGTTGAGCTCAACTGCAGTGTATCTCACTGAAGATTTTACTCC 1493
Query 1650 CAAACTGGTTGATTTCGAATGCTGGAAGATTATTCAGGTGAGATCAGAGAAGAACCTGAA 1709
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1494 CAAACTGGTTGATTTCGAATGCTGGAAGACGATTCAGGTGAGATCAGAGAAGAACCTGAA 1553
Query 1710 GAATATCTGTAATGAAGGAGCAATATGTGTACTTCCCAATGCAATGGAACACCGAGATAT 1769
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
Sbjct 1554 GAATATCTGTAATGAAGGAGCTATATGTGTACTTCCCAATGCAATGGAGCACCGAGATCT 1613
Query 1770 GGATTTACAAGGGAATATCTACTCATTTGGCATACTTTTGCTGGAAATTGTAAGCGGAAG 1829
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1614 AGACTTACAAGGGAATATCTACTCATTTGGCATACTTTTGCTGGAAATTGTAAGCGGAAG 1673
Query 1830 ACCTTCTTATTGCCAAGACAGAGGTTGCTTGGTTGAATGGGTAAGGGAGAAAAACCTTGG 1889
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1674 ATCTTCTTATTGCCAAGACAGAGGTTGCTTGGTTGAATGGGTAAGGGAGAAAAACCTTGG 1733
Query 1890 TGCACCAGATGTGATGGCTAGCTTGGTGGATCCTGAGCTCAAGCATTTCAAGCAAAAAGA 1949
|| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1734 TGTACCAGATGTGGTGGCTAGCTTGGTGGATCCTGAGCTCAAGCATTTCAACCAAAAAGA 1793
Query 1950 ACTTGAGGCAGTATGTGAAGTGGCAAGCCAATGTCTGAACTTGGACCAGAATGAAAAAGA 2009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1794 ACTTGAGGCAGTATGTGAAGTGGCAAGCCAATGTCTGAACTTGGACCAGAATGAAAAAGA 1853
Query 2010 CAAGGATAAGCTTTCTTGTTCGATTCAAGCGCTTTGTGAGACACTAGAGAGTAGAATCAC 2069
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1854 CAAGAATAAGCTTTCTTGTTCGATTCAAGCGCTTTGTGAGACACTAGAGAGTAGAATCAC 1913
Query 2070 TGTGTCCATTTCTGCAGAATTCAAATCGTCTTCTCTGGCGTGGGCCGAGCTAGCGCTGGC 2129
|||||||||||||||||| |||| |||||||||||||| ||||||||||| || |||||
Sbjct 1914 GGTGTCCATTTCTGCAGAACTCAATTCGTCTTCTCTGGCATGGGCCGAGCTCGCACTGGC 1973
Query 2130 CTCGCCTTCTAACGAAGACGACGATGATAGGAGTAAATAAAATTGGCTTTGTTGTTATGA 2189
|||||||||||| ||||| || ||||| ||||||||||||| ||||| ||| |||||||
Sbjct 1974 CTCGCCTTCTAATGAAGAAGAAGATGAAAGGAGTAAATAAA-TTGGCAATGTAGTTATGA 2032
Query 2190 C 2190
|
Sbjct 2033 C 2033
> Ahg475009 jgi|Araly1|475009|fgenesh2_kg.2__139__AT1G63430.1
Length=2568
Score = 833 bits (451), Expect = 0.0
Identities = 951/1185 (80%), Gaps = 63/1185 (5%)
Strand=Plus/Plus
Query 979 CATCGAGCATCGAGA-CAAACATGGCTTCGGA-ATTTTGAGATAGTCAC-GGGATC-ATC 1034
||| ||||||| | | | || |||||||| | | ||||||||||||| ||| || ||
Sbjct 1097 CATAGAGCATCAAAACCTAA-ATGGCTTC-TAGCTCTTGAGATAGTCACAGGG-TCAAT- 1152
Query 1035 AGTTGGCTTGCTCTTTCTAGTCGTAATGTTCTCTGCATGTAGC-TTG-TGCAA-AATAAA 1091
||||| |||||| | || || | | | ||||| ||| || | | | || || || | |
Sbjct 1153 GGTTGGTTTGCTCCTCCTGGTTGCACTTTTCTCAGCA-GT-TCATCGCTGGAACAACAGA 1210
Query 1092 GCGCTCTCTCATCGTTCCCTGGAAGAAATCTGCAAGTGAAAAGGAGAAGTTCACGGTCTA 1151
| ||||||||| |||| ||||| |||||| ||||||||||||| |||||||| |||||
Sbjct 1211 TC-ATCTCTCATCATTCCTTGGAAAAAATCTTCAAGTGAAAAGGAAAAGTTCACAGTCTA 1269
Query 1152 CGTTGATTCTGAAATGCTGAAGGATGTTTCAAGA-TATACAAGACAAGAGCTAGAAGTAG 1210
||| |||||||||||||||||||||||||| ||| || |||||||||||||| ||||| |
Sbjct 1270 CGTAGATTCTGAAATGCTGAAGGATGTTTCGAGATTA-ACAAGACAAGAGCTCGAAGTGG 1328
Query 1211 CATGTGAAGACTTCAGCAACATCATTGATTCTA-GTGCAGAGAGTCAGATTTACAAAGGA 1269
| ||||||||||| ||||| ||||||| || || |||||| |||||||| || ||||||
Sbjct 1329 CGTGTGAAGACTTTAGCAATATCATTGGTT-TATCTGCAGATAGTCAGATCTATAAAGGA 1387
Query 1270 ACGA-TCAAAGGCGGGACTGAGATCGCGGTTATCTCTCTCTGCGTTAAA-GAAGAAAATT 1327
|| | | ||||| ||| ||||||| || || |||||||| || | |||| |||||| |||
Sbjct 1388 AC-ACTGAAAGGTGGGTCTGAGATTGCCGTGATCTCTCTTTGTG-TAAAGGAAGAAGATT 1445
Query 1328 GGACTGGATATCTTGAGCT-TAATTTCCAGAGAGAGGTTGCGGCTTTGGCTAGATTAAAC 1386
||||||||||||||||||| | ||||||||||||||| ||| | ||||||||||||||||
Sbjct 1446 GGACTGGATATCTTGAGCTCT-ATTTCCAGAGAGAGGCTGCAGATTTGGCTAGATTAAAC 1504
Query 1387 CATGAGAATGCGGGGAAATTACTGGGATACTGTAAAGAGAGT-ACACCGTTCACAAGAAT 1445
|| ||||| | | |||||||| ||||| |||||||||| | |||| || ||||||||
Sbjct 1505 CACGAGAACACAGCCAAATTACTTGGATATTGTAAAGAGA-TCTCACCATTTACAAGAAT 1563
Query 1446 GCTTGTGTTTGAGTATGCATCAAACGGGACACTATACGACCATCTCCACTATGCGGACG- 1504
|||||| |||||||||||||||||||| ||||||||||| || |||||||||| ||| |
Sbjct 1564 GCTTGTTTTTGAGTATGCATCAAACGGAACACTATACGAGCACCTCCACTATGGGGAAGC 1623
Query 1505 GGAGTTTAGTATCGTGGGCAAAACGCATGAAAATTGTTATAGGCATCGCACGTGGTCTCA 1564
|| ||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||
Sbjct 1624 GG-CTTTAGTATCGTGGGCAAGACGGATGAAGATTGTTATAGGCATCGCACGTGGTCTCA 1682
Query 1565 AGTACCTTCATACTG-AACTCCATCCTCCATTTACAGTCTCTGAGTTGAGCTCAA-CTGC 1622
|||||||||||| || |||| |||||||||||||| |||||||| ||||||||| | ||
Sbjct 1683 AGTACCTTCATA-TGGAACTTGATCCTCCATTTACAATCTCTGAGCTGAGCTCAAAC-GC 1740
Query 1623 AGTGTATCTCACTGAAGATTTTACTCCCAAACTGGTTGATTTCGAATGCTGGAAGATTAT 1682
| | |||||||| ||||| ||||||||||| |||||||||| ||||||||||||| ||
Sbjct 1741 AATCTATCTCACAGAAGACTTTACTCCCAAGTTGGTTGATTTTGAATGCTGGAAGACGAT 1800
Query 1683 TCAGGTGAGATCAGAGAAGAACCTGAAGAA-TATCT-GTAATGAAGGAGCAATATGTGTA 1740
|| | ||||||||| ||||| ||| ||| ||| | ||| | || | ||||||||
Sbjct 1801 TCTTGCGAGATCAGAAAAGAATTTGA-GAAATAT-TAGTAGCCAGGGTTCGATATGTGTG 1858
Query 1741 CTTCCCAAT-GCAATGGA-ACACCGAGATATGGAT-T-TACAAGGG-AATATCTACT-CA 1794
|| ||||| | |||||| | |||| || | ||| | | | ||| |||||||| | ||
Sbjct 1859 CT-CCCAAACGGAATGGAGAG-CCGATATCTTGATGTGT-C--GGGTAATATCTA-TGCA 1912
Query 1795 TTTGGCATACTTTTGCTGGAAATTGTAAGCGGAAGACCTTCTTATTGCCAAGACAGAGGT 1854
|||||||| ||||||||||||||||| || ||||||||| | |||||| |||||| ||||
Sbjct 1913 TTTGGCATTCTTTTGCTGGAAATTGTCAGTGGAAGACCTCCCTATTGCAAAGACAAAGGT 1972
Query 1855 TGCTTGGTTGAATGGGTAAGGGAGAAAAACCTTGGTGCACCAGATGTGATGGCTAGCTTG 1914
| ||| ||||||||| || |||| ||||| |||||||| | ||||| | |||
Sbjct 1973 TTCTTAATTGAATGGGCAAAGGAGTT---CCTTGAAGCACCAGAGGCAATGGCGGGATTG 2029
Query 1915 GTGGATCCTGAGCTCAAGCATTTCAAGCAAAAAGAACTTGAGGCAGTATGTGAAGTGGCA 1974
|||||||| ||||| || ||||| || ||| |||| |||||| | ||||| |||||||||
Sbjct 2030 GTGGATCCAGAGCTGAAACATTTTAACCAAGAAGAGCTTGAGACGGTATGCGAAGTGGCA 2089
Query 1975 AGCCAATGTCT-GAACTTGGACCAGAATGAAAAAGA-CAAGGATAAGCTTTCTTGT--TC 2030
|||||||| || |||| ||||| || || || | ||| |||| | | | ||
Sbjct 2090 AGCCAATG-CTTGAACAGGGACCCGACC-AACAACAACAACAATAA-CAA-CAAGCCCTC 2145
Query 2031 GATT-CAAGCGCTTTGTGAGACACTAGAGAGTAGAATCACTGTGTCCATTTCTGCAGAAT 2089
| | |||| ||| || |||||| | ||||||||||||| | |||| |||||||||||
Sbjct 2146 -AGTGCAAGAGCTATGCGAGACATTGGAGAGTAGAATCAGTCTGTCAATTTCTGCAGAGC 2204
Query 2090 TCAA-ATCGTCTTCTCTGGCGTGGGCCGAGCTAGCGCTGGCCTCG 2133
| || ||| |||||| |||| ||||||||||| ||||| | ||||
Sbjct 2205 T-AAGATCATCTTCTTTGGCTTGGGCCGAGCTGGCGCTTGACTCG 2248
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89169263545
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5