BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41190.1
Length=2051
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493857 jgi|Araly1|493857|fgenesh2_kg.7__3290__AT5G41190.1 2915 0.0
Ahg899833 jgi|Araly1|899833|Al_scaffold_0004_483 180 4e-44
> Ahg493857 jgi|Araly1|493857|fgenesh2_kg.7__3290__AT5G41190.1
Length=1939
Score = 2915 bits (1578), Expect = 0.0
Identities = 1812/1923 (94%), Gaps = 23/1923 (1%)
Strand=Plus/Plus
Query 66 TTGAAGCGGCAAATAACGAAAACCATGGATCCGAAACCAACCTCGATGTGGAGCTCAATT 125
||||||||||||||||||| |||||||||||||||||||||||| |||||||| || |||
Sbjct 1 TTGAAGCGGCAAATAACGAGAACCATGGATCCGAAACCAACCTCAATGTGGAGTTCTATT 60
Query 126 GTGAAGAAAGATCCACCTTCAAAGCCTCCGGTTAACGACGGAGCTCCGGCAGCGATTCTC 185
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 GTGAAGAAAGATCCACCTTCAAAGCCTCCGGTTAACGATGGAGCTCCGGCAGCGATTCTC 120
Query 186 GGGATGGTCGGAAACTGCAAATCCACAAAAGGAATATCTATTGCGGTTGTTGACGCCAAC 245
|| |||||||||||||||||||||||||| ||||||||||| || |||||||||||||||
Sbjct 121 GGTATGGTCGGAAACTGCAAATCCACAAAGGGAATATCTATGGCTGTTGTTGACGCCAAC 180
Query 246 GCCATCATTGAAGGACGTCAGAGCTTAACAAACTTCGCCGACAAATTCGTAACTGTCCCT 305
||| |||| |||||| | ||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 181 GCCGTCATCGAAGGAGGCCAGAGCTTAACAAACTTCGCCGACAGATTCGTAACCGTCCCT 240
Query 306 GAGGTTCTCTCTGAGATTCGTGACCCTGCTTCTCGCCGTCGTCTCGCTTTCATCCCTTTC 365
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAAGTACTCTCTGAGATTCGTGACCCTGCTTCTCGCCGTCGTCTCGCTTTCATCCCTTTC 300
Query 366 ACTATTGATACCATGGAACCTTCTCCTGAATCTCTAAGTAAAGTTATCAAATTTGCAAGA 425
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 301 ACTATTGATACCATGGAACCTTCTCCTGAATCTCTCAGTAAAGTTATCAAATTTGCAAGA 360
Query 426 GCTACTGGTGATTTGCA-ATCTCTGTCTGATGTTGATCTGAAGTTGATTGCTTTGTCATA 484
||||||||||||||||| | ||||||||||||||||||| || |||||||||||||||||
Sbjct 361 GCTACTGGTGATTTGCAGA-CTCTGTCTGATGTTGATCTCAAATTGATTGCTTTGTCATA 419
Query 485 CACGCTTGAGGCTCAGGTTTATGGCACCAAAAATCTTAGAGATGTTCCTCCACCGATTCA 544
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CACGCTTGAGGCTCAGGTTCATGGCACCAAAAATCTTAGAGATGTTCCTCCACCGATTCA 479
Query 545 AACTGTTAGAGTTAAGAGATTACCTGAGAAGGATTTACCTGGTTGGGGCTCCAATGTGGC 604
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 480 AACTGTTAGAGTAAAGAGGTTACCTGAGAAGGATTTACCTGGTTGGGGCTCCAATGTGTC 539
Query 605 TAACTTGGAGGAGTGGGAGGCACTTGAAAACGAGACTGAGGAAAAATCCAACGCTAACTC 664
||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 540 TAACTTGGACGAGTGGGAGGCACTTGAAAACGAGACTGAGGAACTATCCAACGCTAACTC 599
Query 665 CAAAATCCTTCCATTGAAAGACCTTAACATGAATATTATTGCTTCAGACAATGTTTCTGA 724
|||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 600 CAAAATCCTTCCGTTGAAAGACCTTAACATGAATATTATCGCTTCGGACAATGTTTCTGA 659
Query 725 GGTTGGTTCTGTTGTCTCTCATACTGAGAATCATGAAGAGGATGTGCAGGAAGGTGGGAA 784
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||
Sbjct 660 GGTTGGTTCTGTTGTCTCTCATACTGAGAATCATGAAGTGGATGAGCAGGAAGGTGAGAA 719
Query 785 GAAGCATAGGCGATACCCGCCCAAGAAAACAGAGATTAAGCTTGAGGGTAAGATGGTAGT 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GAAGCATAGGCGATACCCGCCCAAGAAAACAGAGATTAAGCTTGAGGGTAAGATGGTAGT 779
Query 845 GGAGGGAGTTGATGCATCCCAGGGGCAATatgatgatgatgatgatgCT---AGTGATTG 901
| ||||| | ||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 780 GAAGGGAATAGATGCATCCCAGGGGCAATATGATGATGATGATGATGATGCCAGTGATTG 839
Query 902 GAGACCCGCAGTCAGTAGAAGTACTCACTCAAAGTATCTTAGAAGAAAGGCAAGGTGGGA 961
|||||||||||| ||||||||||||||| || || ||||||||| ||||||| ||||||
Sbjct 840 GAGACCCGCAGTTAGTAGAAGTACTCACAGAAGGTTTCTTAGAAGGAAGGCAACGTGGGA 899
Query 962 ACATTACAATGCTTTGGCTGAACAAGAAATTCAGAAAGATCAAGAAGCTGACAAAGCTCG 1021
|||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 900 ACATCACAATGCCTTGGCTGAACAAGAAATTCAGCAAGATCAAGAAGCTGACAAAGCTCG 959
Query 1022 ACACACTAAAGAGGCCAATGAAACCCACGCAAAAGATAGTGGAAAGAATGGTGAGGATAT 1081
|||| ||||||| ||||||||| ||| ||||||||||| |||||| ||||||||||| |
Sbjct 960 ACACTCTAAAGACCCCAATGAAAACCATGCAAAAGATAGCGGAAAGGATGGTGAGGATCT 1019
Query 1082 ATCTTCCATCCTTAAAGATATGAGGTTGGAGGAAGAGTCATTAAGGGCTCTCCAAGAAGA 1141
||| |||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1020 ATCGTCCATCCTAAAAGATATGAGGTTGGAGGAAGATTCATTAAGGGCTCTCCACGAAGG 1079
Query 1142 GACTGAAGAGACGAATGCTGAAGCAACTTTGATCAATGGTGAGGATGATATTGATCATGA 1201
|||||||||||||||||||||||| ||||||||||||||||| |||| ||| ||
Sbjct 1080 GACTGAAGAGACGAATGCTGAAGCTACTTTGATCAATGGTGA---TGAT---GAT-AT-- 1130
Query 1202 TATTGAAGTCGAAGCTGAGGGGATCGATGTTGCAAATCAAGCGCTAGAGAACTTGGAGAT 1261
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1131 T---GAAGTCGAAGCTGAGGGGATCGATGTTACAAATCAAGCGCTAGAGAACTTGGAGAT 1187
Query 1262 TGCTAGTGAGGCTGAGGATACCTTCGAGGCATCATCGATTGGAGATGATGGTAGCAGCGA 1321
|| ||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 1188 TGATAGTGAGGCTGGGGATACCTTTGAGGCATCATCGATTGCAGATGATGGTAGCAGCGA 1247
Query 1322 GCAGAGTTGGTCATTGAGAGCTTTATCTGAGTCCAGTGTAGCTTGTATAACTGGTGACTA 1381
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1248 GCAGAGTTGGTCGTTGAGAGCCTTATCTGAGTCCAGTGTAGCTTGTATAACTGGTGATTA 1307
Query 1382 TGCAATGCAGAATGTTATTCTTCAAATGGGTTTGCGATTGCTTGCACCCGGCGGAATGCA 1441
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1308 TGCAATGCAGAATGTTATTCTTCAAATGGGTTTGCGTTTGCTTGCACCCGGCGGAATGCA 1367
Query 1442 AATTCGCCAACTGCATAGGTGGATCTTAAAATGCCATGCTTGCTACACAGTAACTCCTGA 1501
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1368 AATTCGCCAACTGCACAGGTGGATCTTGAAATGCCATGCTTGCTACACAGTAACTCCTGA 1427
Query 1502 AATTGGAAGAATCTTCTGTCCCAAATGTGGGAATGGTGGCACTCTACGCAAGGTAGCGGT 1561
|||||||||||||||||||||||| || || |||||||||||||||||||||||||||||
Sbjct 1428 AATTGGAAGAATCTTCTGTCCCAAGTGCGGTAATGGTGGCACTCTACGCAAGGTAGCGGT 1487
Query 1562 TACAATAGGCGCGAATGGCGCCATCATAGCTGCATGTAAACCACGAATTACACTTCGAGG 1621
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1488 TACAATAGGCGAGAATGGCGCCATCATAGCTGCATGTAAACCACGAATTATACTTCGAGG 1547
Query 1622 GACCCAATATTCGATACCAATGCCTAAAGGAGGAAGAGAGGCAATCACCAAGAATCTGAT 1681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1548 GACCCAATATTCGATACCAATGCCTAAAGGAGGAAGAGAGGCAATCACCAAGAATCTGAT 1607
Query 1682 TCTACGGGAAGATCAACTCCCTCAAAAGCTTCTCCACCCTAGGACCAAGAAGAAAGCAAG 1741
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 1608 TCTACGGGAAGATCAACTCCCTCAAAAGTTTCTCCACCCTAGGACCAAAAAGAAAGCAAG 1667
Query 1742 CAAACCGGGTGATGAGTACTTCGTATCAGATGATGTGTTCTTGAACCATCATAGTGATAG 1801
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1668 CAAACCGGGTGATGAGTACTTTGTATCAGACGATGTGTTCTTGAACCATCATAGTGATAG 1727
Query 1802 AAAGGCGCCATTGCAGCCTCCTGTGAGAAAAGCTATGTCGGTTTTCAGCCAGAAAAGAAA 1861
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1728 AAAGGCACCATTGCAGCCTCCTGTGAGAAAAGCTATGTCGGTTTTCAGCCAGAAAAGAAA 1787
Query 1862 CCCTAATGACAACCATTACTCTCGTTCTATGCACTGATCTTTGTTTCTCCTACACAACAA 1921
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1788 CCCTAATGACAACCATTACTCTCGTTCTATGCACTGATCTTTGTTTCTCCAACACAACAA 1847
Query 1922 ACATCTCCTGTACTTCA-GA---TGCCAACGAttttgtctctt-ttttgtacttttactt 1976
|||||||| ||||| | || |||||| ||||||||||||| |||| ||||||| |||
Sbjct 1848 TCATCTCCTTTACTTTAAGAAGATGCCAATGATTTTGTCTCTTCTTTT-TACTTTTTCTT 1906
Query 1977 ttt 1979
|||
Sbjct 1907 TTT 1909
> Ahg899833 jgi|Araly1|899833|Al_scaffold_0004_483
Length=522
Score = 180 bits (97), Expect = 4e-44
Identities = 146/167 (87%), Gaps = 13/167 (8%)
Strand=Plus/Plus
Query 1268 TGAGGCTGAG-GATACCTTCGAGGCATCATCGATTGG-AGATGATGGTAGCAGCGAGCAG 1325
|||||||| | |||||||| ||||||||||||| ||| ||||||||||||||||||||||
Sbjct 285 TGAGGCTG-GTGATACCTTTGAGGCATCATCGA-TGGCAGATGATGGTAGCAGCGAGCAG 342
Query 1326 AGTTGGTCATTGAGAGCTTTATCTGAGTCCAGTGTAGCTTGTATAACTGGTGACTATGCA 1385
|||||||| | || |||||| |||| ||||| ||||||||| |||||||||||
Sbjct 343 AGTTGGTC---G-----TT-ATCTGAATCCAATGTAGTTTGTATAACCGGTGACTATGCG 393
Query 1386 ATGCAGAATGTTATTCTTCAAATGGGTTTGCGATTGCTTGCACCCGG 1432
||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 394 ATGCAAAATGTTATTCTTCAAATGGGTTTGCGTTTGCTTGCACCCGG 440
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77132746125
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5