BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G41200.1 Length=993 Score E Sequences producing significant alignments: (Bits) Value Ahg891755 jgi|Araly1|891755|Al_scaffold_0007_3741 1094 0.0 Ahg493979 jgi|Araly1|493979|fgenesh2_kg.7__3412__AT5G41200.1 1027 0.0 Ahg947831 jgi|Araly1|947831|scaffold_704060.1 880 0.0 > Ahg891755 jgi|Araly1|891755|Al_scaffold_0007_3741 Length=1188 Score = 1094 bits (592), Expect = 0.0 Identities = 845/961 (88%), Gaps = 42/961 (4%) Strand=Plus/Plus Query 28 TCCTCTTCTTCTTATTCACTCGCTTTC-ACAAGTTTGAGCAATAGGCTTGAGACCATCTT 86 |||||||| |||||||||||||| ||| ||||||||||||||||| |||||||||||||| Sbjct 31 TCCTCTTCATCTTATTCACTCGC-TTCTACAAGTTTGAGCAATAGACTTGAGACCATCTT 89 Query 87 CAAGAAAGCTTCAGAGCTTTGCACTCTTTGTGATATCGAAGCCTGCGTTATCTATTACGG 146 |||||||||||| |||||||||||||| |||||||| ||||||||||| ||||||||||| Sbjct 90 CAAGAAAGCTTCGGAGCTTTGCACTCTCTGTGATATTGAAGCCTGCGTCATCTATTACGG 149 Query 147 ACCAGACGGAGAACTTAAGACATGGCCTAAGGAGAAAGAGAAAGTGAGAGACATTGCTCT 206 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 150 ACCAGACGGAGAACTTAAGACATGGCCTAAGGAGCGAGAGAAAGTGAGAGACATTGCTCT 209 Query 207 TAGGTATAGTCTATTGAACGAAGCATTGAGACGCAAGAAAAGCGTTAATCTTCATGGGTT 266 ||||||||||| ||| |||||||| ||||||||||||||| ||||||||||| ||| || Sbjct 210 TAGGTATAGTCAATTAAACGAAGCCTTGAGACGCAAGAAACGCGTTAATCTTTATGACTT 269 Query 267 CCTgaacaagaagaag-aacaagggtttgaagaatccgaacaagaagatgaagaCGAGTC 325 |||||||||||||||| || |||||||||||||||||||| ||||||| |||||||||| Sbjct 270 CCTGAACAAGAAGAAGGAA-AAGGGTTTGAAGAATCCGAATAAGAAGAGGAAGACGAGT- 327 Query 326 TT-AAGAACGTGAAT-ATTTTAAAGTATCC-ACTCGCTGATCATTACCCTCCCGACCAAG 382 || ||||| |||||| | || ||||||||| | | ||||||||||| |||| |||||| Sbjct 328 TTGAAGAAGGTGAATGAATT-AAAGTATCCGA-TATCTGATCATTACTCTCCTGACCAAA 385 Query 383 TTTCTCCA--CTGATTCAGTCCTTGGAACTCCATGTCTCTAAATTCCAAGAAAGGCTTCG 440 | ||||| |||||||||||||| |||||| ||||||||||| |||||||||||||||| Sbjct 386 T--CTCCAAACTGATTCAGTCCTTAGAACTCAATGTCTCTAAAGTCCAAGAAAGGCTTCG 443 Query 441 ATTTCTTGAGTCGCAGAAACAGAATCAGACAAAACCGGATCATCAGAGTTTAACACCATC 500 ||| |||||||||||||||||||| |||||||||| ||||||||| ||||| || || | Sbjct 444 TTTTGTTGAGTCGCAGAAACAGAATGAGACAAAACCAGATCATCAGGGTTTAGCATCAAC 503 Query 501 CTCTCTGAATCATTACACCCAATCTTTGAACCCTAGCCAGTTCTCGCTGTTTATGTATAA 560 |||||| ||||| | |||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 504 CTCTCTAAATCAGCAGACCCAATCTTTGAACCCTAGCCAGTTCTCGCTATTTATTTATAA 563 Query 561 CCATGGAGACAATACTCTGTCTCAGATCCCAGTCTCTGCATCAAATTTCAATCAGGATTA 620 ||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 564 CCATGGAGATAATACTCTCTCTCAAATCCCAGTCTCTGCATCAAATTTCAATCAGGATT- 622 Query 621 TTTCTCAGCGTTACTTGAAGAATCTGAGTTGAAGAATCAGTTAATGAAGCCGGAGATTTG 680 | ||||||||||||| ||||||||||||| |||||||||||| |||||| |||| |||| Sbjct 623 T--CTCAGCGTTACTTCAAGAATCTGAGTTTAAGAATCAGTTAGTGAAGCAGGAGCTTTG 680 Query 681 TGGTTATGATCAGAATCAGAACATGAGCATGGGTGACATCACAAACAACAAATTTC-AAG 739 |||||||||||||||| | || | ||| || |||| || ||||||| |||| || Sbjct 681 TGGTTATGATCAGAAT-A-----TGTGTATGAGTAACATTACCAACAACAG-TTTCCAAC 733 Query 740 ATCCTTGCGTCTCAAACAAAGAA--------G-CGGTACAAGAATCTGTCAACAACTTTG 790 ||||||||||||||||||||||| | |||||||||||||||| || |||| || Sbjct 734 ATCCTTGCGTCTCAAACAAAGAACATTACTCGGCGGTACAAGAATCTGTGAATAACTATG 793 Query 791 GGTTGAATCAATTGATGTACAAGGAGTTTTATGGTTGTGATCAAAACATGTCTATGGGTA 850 ||||||||| |||||| | ||||||||||||||||||||||| || | ||| | || Sbjct 794 AGTTGAATCAGTTGATGCAGAAGGAGTTTTATGGTTGTGATCAGAA-A---CTAAG--TA 847 Query 851 ACATCAATAGCAACA-GCTTTCAAAATCCTTGCGTCTCAAACACACAACATTACTCGGCG 909 ||||||||||||||| | |||||| |||||||||||||||||||||||||| |||||||| Sbjct 848 ACATCAATAGCAACAAG-TTTCAACATCCTTGCGTCTCAAACACACAACATAACTCGGCG 906 Query 910 GTAGAAGAATCTGTGAAGAACCCCTGGTTGAATCAGTTAATGCAGAATGAACTTTACGGT 969 ||| ||||||||||| | |||||||||||||||||||| |||||| |||||||||| ||| Sbjct 907 GTACAAGAATCTGTGGATAACCCCTGGTTGAATCAGTTGATGCAGCATGAACTTTATGGT 966 Query 970 T 970 | Sbjct 967 T 967 > Ahg493979 jgi|Araly1|493979|fgenesh2_kg.7__3412__AT5G41200.1 Length=891 Score = 1027 bits (556), Expect = 0.0 Identities = 801/913 (88%), Gaps = 41/913 (4%) Strand=Plus/Plus Query 31 TCTTCTTCTTATTCACTCGCTTTC-ACAAGTTTGAGCAATAGGCTTGAGACCATCTTCAA 89 ||||| |||||||||||||| ||| ||||||||||| ||||| ||||||||||||||||| Sbjct 1 TCTTCATCTTATTCACTCGC-TTCTACAAGTTTGAGTAATAGACTTGAGACCATCTTCAA 59 Query 90 GAAAGCTTCAGAGCTTTGCACTCTTTGTGATATCGAAGCCTGCGTTATCTATTACGGACC 149 ||||||||| |||||||||||||| |||||||| |||||||||| |||||||||||||| Sbjct 60 GAAAGCTTCCGAGCTTTGCACTCTCTGTGATATTAAAGCCTGCGTCATCTATTACGGACC 119 Query 150 AGACGGAGAACTTAAGACATGGCCTAAGGAGAAAGAGAAAGTGAGAGACATTGCTCTTAG 209 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 120 AGACGGAGAACTTAAGACATGGCCTAAGGAGCGAGAGAAAGTGAGAGACATTGCTCTTAG 179 Query 210 GTATAGTCTATTGAACGAAGCATTGAGACGCAAGAAAAGCGTTAATCTTCATGGGTTCCT 269 |||||||| ||| |||||||| ||||||||||||||| ||||||||||| ||| ||||| Sbjct 180 GTATAGTCAATTAAACGAAGCCTTGAGACGCAAGAAACGCGTTAATCTTTATGACTTCCT 239 Query 270 gaacaagaagaag-aacaagggtttgaagaatccgaacaagaagatgaagaCGAGTCTT- 327 ||||||||||||| || |||||||||||||| ||||| ||||||| |||||||||| || Sbjct 240 GAACAAGAAGAAGGAA-AAGGGTTTGAAGAACCCGAATAAGAAGAGGAAGACGAGT-TTG 297 Query 328 AAGAACGTGAAT-ATTTTAAAGTATCC-ACTCGCTGATCATTACCCTCCCGACCAAGTTT 385 ||||| |||||| | || ||||||||| | || ||||||||||| |||| |||||| | Sbjct 298 AAGAAGGTGAATGAATT-AAAGTATCCGA-TCTCTGATCATTACTCTCCTGACCAAAT-- 353 Query 386 CTCCA--CTGATTCAGTCCTTGGAACTCCATGTCTCTAAATTCCAAGAAAGGCTTCGATT 443 ||||| |||||||||||||| |||||| ||||||||||| |||||||||||||||| || Sbjct 354 CTCCAAACTGATTCAGTCCTTAGAACTCAATGTCTCTAAAGTCCAAGAAAGGCTTCGTTT 413 Query 444 TCTTGAGTCGCAGAAACAGAATCAGACAAAACCGGATCATCAGAGTTTAACACCATCCTC 503 | |||||||||||||||| || |||||||||||||||||||||||||| || ||||||| Sbjct 414 TGTTGAGTCGCAGAAACACAAGGAGACAAAACCGGATCATCAGAGTTTAGCATCATCCTC 473 Query 504 TCTGAATCATTACACCCAATCTTTGAACCCTAGCCAGTTCTCGCTGTTTATGTATAACCA 563 ||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 474 TCTGAATCAGCAGACCCAATCTTTGAACCCTAGCCAGTTCTCGCTATTTATGTATAACCA 533 Query 564 TGGAGACAATACTCTGTCTCAGATCCCAGTCTCTGCATCAAATTTCAATCAGGATTATTT 623 |||||| |||||||| ||||| |||||||||||||||||||||||||||||||||| | Sbjct 534 TGGAGATAATACTCTCTCTCAAATCCCAGTCTCTGCATCAAATTTCAATCAGGATT-T-- 590 Query 624 CTCAGCGTTACTTGAAGAATCTGAGTTGAAGAATCAGTTAATGAAGCCGGAGATTTGTGG 683 ||||||||||||| ||||||||||||| ||||| | |||| |||||| |||| ||||||| Sbjct 591 CTCAGCGTTACTTCAAGAATCTGAGTTTAAGAACCCGTTAGTGAAGCAGGAGCTTTGTGG 650 Query 684 TTATGATCAGAATCAGAACATGAGCATGGGTGACATCACAAACAACAAATTTC-AAGATC 742 |||||||||||| || || ||||| ||| ||| || ||||||| |||| || ||| Sbjct 651 TTATGATCAGAA-CA-----TGTGCATGAGTGGCATTACCAACAACAG-TTTCCAACATC 703 Query 743 CTTGCGTCTCAAACAAAGAA--------G-CGGTACAAGAATCTGTCAACAACTTTGGGT 793 |||||||||||||||||||| | |||||||||||||||| ||||||| || || Sbjct 704 CTTGCGTCTCAAACAAAGAACATTACTCGGCGGTACAAGAATCTGTAAACAACTATGAGT 763 Query 794 TGAATCAATTGATGTACAAGGAGTTTTATGGTTGTGATCA-AAAC-ATGTCTATGGGTAA 851 | ||||| ||| || | ||||||||||||||||||||||| |||| | | || | ||| Sbjct 764 TAAATCAGTTGCTGCAGAAGGAGTTTTATGGTTGTGATCAGAAACTAA-T-TA-G--TAA 818 Query 852 CATCAATAGCAACAGCTTTCAAAATCCTTGCGTCTCAAACACACAACATTACTCGGCGGT 911 |||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||| Sbjct 819 CATCAATAGCAACAATTTTCAACATCCTTGCGTCTCAAACACACAACATAACTCGGCGGT 878 Query 912 AGAAGAATCTGTG 924 | ||||||||||| Sbjct 879 ACAAGAATCTGTG 891 > Ahg947831 jgi|Araly1|947831|scaffold_704060.1 Length=1052 Score = 880 bits (476), Expect = 0.0 Identities = 783/921 (85%), Gaps = 61/921 (7%) Strand=Plus/Plus Query 23 CTTCGTCCTC-T--TCTTCTTATTCACTCGCTTTC-ACAAGTTTGAGCAATAGGCTTGAG 78 |||| ||||| | ||||||||||||||||| ||| || |||||||||||||| |||||| Sbjct 67 CTTCTTCCTCTTGCTCTTCTTATTCACTCGC-TTCTACCAGTTTGAGCAATAGACTTGAG 125 Query 79 ACCATCTTCAAGAAAGCTTCAGAGCTTTGCACTCTTTGTGATATCGAAGCCTGCGTTATC 138 |||||||||||||||||||| |||||||||||||| |||||||| ||||||||||| ||| Sbjct 126 ACCATCTTCAAGAAAGCTTCCGAGCTTTGCACTCTCTGTGATATTGAAGCCTGCGTCATC 185 Query 139 TATTACGGACCAGACGGAGAACTTAAGACATGGCCTAAGGAGAAAGAGAAAGTGAGAGAC 198 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 186 TATTACGGACCAGACGGAGAACTTAAGACATGGCCTAAGGAGCGAGAGAAAGTGAGAGAC 245 Query 199 ATTGCTCTTAGGTATAGTCTATTGAACGAAGCATTGAGACGCAAGAAAAGCGTTAATCTT 258 ||||||||||||||||||| ||| |||||||| ||||||||||||||| ||||||||||| Sbjct 246 ATTGCTCTTAGGTATAGTCAATTAAACGAAGCCTTGAGACGCAAGAAACGCGTTAATCTT 305 Query 259 CATGGGTTCCTgaacaagaagaagaacaagggtttgaagaatccgaacaagaagatgaag 318 ||| |||||||||||||||||| | ||||||||||||||||||||||||| || |||| Sbjct 306 TATGACTTCCTGAACAAGAAGAAGGAGAAGGGTTTGAAGAATCCGAACAAGAGGAGGAAG 365 Query 319 aCGAGTCTT-AAGAACGTGAATATTTTAAAGTATCCACTCGCTGATCATTACCCTCCCGA 377 |||||| || ||||| |||||| | |||||||||||| || ||||||||||| |||| || Sbjct 366 ACGAGT-TTGAAGAAAGTGAATGTATTAAAGTATCCAATCTCTGATCATTACTCTCCTGA 424 Query 378 CCAAGTTTCTCCA--CTGATTCAGTCCTTGGAACTCCATGTCTCTAAATTCCAAGAAAGG 435 |||| | ||||| |||||||||||||| |||||| ||||||||||| ||||||||||| Sbjct 425 CCAAAT--CTCCAAACTGATTCAGTCCTTAGAACTCAATGTCTCTAAAGTCCAAGAAAGG 482 Query 436 CTTCGATTTCTTGAGTCGCAGAAACAGAATCAGACAAAACCGGATCATCAGAGTTTAACA 495 ||||| ||| ||||||| |||||||| || |||||||||||||||||||||||||| || Sbjct 483 CTTCGTTTTGTTGAGTCTCAGAAACACAAGGAGACAAAACCGGATCATCAGAGTTTAGCA 542 Query 496 CCATCCTCTCTGAATCATTACACCCAATCTTTGAACCCTAGCCAGTTCTCGCTGTTTATG 555 ||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||| Sbjct 543 TCATCCTCTCTGAATCATCAGACCCAATCTTTGAACCCTAGCCAGTTCTCGCTATTTATT 602 Query 556 TATAACCATGGAGACAATACTCTGTCTCAGATCCCAGTCTCTGCATCAAATTTCAATC-A 614 |||||||||||||| |||||||| ||||| |||||| ||||||||||||||||||||| | Sbjct 603 TATAACCATGGAGATAATACTCTCTCTCAAATCCCACTCTCTGCATCAAATTTCAATCCA 662 Query 615 GGATTATTTCTCAGCGTTACTTGAAGAATCTGAGTTGAAGAATCAGTTAATGAAGCCGGA 674 | ||| | | | | || ||||||||| | | | | | |||||| ||| Sbjct 663 G-ATT-T-----A-C-T-AC---AAGAATCTG-GCT------T--G--A-TGAAGCAGGA 697 Query 675 GATTTGTGGTTATGATCAGAATCAGAACATGAGCATGGGTGACATCACAAACAACAAATT 734 | ||||||||||||| | ||||||||| ||| ||||||| || |||||||| || Sbjct 698 GCTTTGTGGTTATGA-C-----CAGAACATGTTTATGAGTGACATTACCAACAACAAGTT 751 Query 735 TCAAGATCCTTGCGTCTCAAACAAAGAAG----C--GGT---ACAAGAATCTGTCAACAA 785 |||| |||||||||||||||||| |||| | ||| || |||| |||| || || Sbjct 752 TCAACATCCTTGCGTCTCAAACACAGAACATTACTCGGTGGTACCAGAACCTGTGAATAA 811 Query 786 CTTTGGGTTGAATCAATTGATGTACAAGGAGTTTTATGGTTGTGATCAAAACATGTCTAT 845 || |||||| ||||| |||||| || ||| ||||||||||||||||| ||| ||| Sbjct 812 CTATGGGTTAAATCAGTTGATG--CA-GGACTTTTATGGTTGTGATCAGAAC----CTAA 864 Query 846 GGGTAACATCAATAGCAACAGCTTTCAAAATCCTTGCGTCTCAAACACACAACATTACTC 905 | ||||||||||||||||| ||| ||| || ||| |||||||||||||||||||||||| Sbjct 865 G--TAACATCAATAGCAACAACTTCCAACATTCTTTCGTCTCAAACACACAACATTACTC 922 Query 906 GGCGGTAGAAGAATCTGTGAA 926 |||||| ||||||||||||| Sbjct 923 TGCGGTACAAGAATCTGTGAA 943 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36902983656 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5