BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41200.1
Length=993
Score E
Sequences producing significant alignments: (Bits) Value
Ahg891755 jgi|Araly1|891755|Al_scaffold_0007_3741 1094 0.0
Ahg493979 jgi|Araly1|493979|fgenesh2_kg.7__3412__AT5G41200.1 1027 0.0
Ahg947831 jgi|Araly1|947831|scaffold_704060.1 880 0.0
> Ahg891755 jgi|Araly1|891755|Al_scaffold_0007_3741
Length=1188
Score = 1094 bits (592), Expect = 0.0
Identities = 845/961 (88%), Gaps = 42/961 (4%)
Strand=Plus/Plus
Query 28 TCCTCTTCTTCTTATTCACTCGCTTTC-ACAAGTTTGAGCAATAGGCTTGAGACCATCTT 86
|||||||| |||||||||||||| ||| ||||||||||||||||| ||||||||||||||
Sbjct 31 TCCTCTTCATCTTATTCACTCGC-TTCTACAAGTTTGAGCAATAGACTTGAGACCATCTT 89
Query 87 CAAGAAAGCTTCAGAGCTTTGCACTCTTTGTGATATCGAAGCCTGCGTTATCTATTACGG 146
|||||||||||| |||||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct 90 CAAGAAAGCTTCGGAGCTTTGCACTCTCTGTGATATTGAAGCCTGCGTCATCTATTACGG 149
Query 147 ACCAGACGGAGAACTTAAGACATGGCCTAAGGAGAAAGAGAAAGTGAGAGACATTGCTCT 206
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 150 ACCAGACGGAGAACTTAAGACATGGCCTAAGGAGCGAGAGAAAGTGAGAGACATTGCTCT 209
Query 207 TAGGTATAGTCTATTGAACGAAGCATTGAGACGCAAGAAAAGCGTTAATCTTCATGGGTT 266
||||||||||| ||| |||||||| ||||||||||||||| ||||||||||| ||| ||
Sbjct 210 TAGGTATAGTCAATTAAACGAAGCCTTGAGACGCAAGAAACGCGTTAATCTTTATGACTT 269
Query 267 CCTgaacaagaagaag-aacaagggtttgaagaatccgaacaagaagatgaagaCGAGTC 325
|||||||||||||||| || |||||||||||||||||||| ||||||| ||||||||||
Sbjct 270 CCTGAACAAGAAGAAGGAA-AAGGGTTTGAAGAATCCGAATAAGAAGAGGAAGACGAGT- 327
Query 326 TT-AAGAACGTGAAT-ATTTTAAAGTATCC-ACTCGCTGATCATTACCCTCCCGACCAAG 382
|| ||||| |||||| | || ||||||||| | | ||||||||||| |||| ||||||
Sbjct 328 TTGAAGAAGGTGAATGAATT-AAAGTATCCGA-TATCTGATCATTACTCTCCTGACCAAA 385
Query 383 TTTCTCCA--CTGATTCAGTCCTTGGAACTCCATGTCTCTAAATTCCAAGAAAGGCTTCG 440
| ||||| |||||||||||||| |||||| ||||||||||| ||||||||||||||||
Sbjct 386 T--CTCCAAACTGATTCAGTCCTTAGAACTCAATGTCTCTAAAGTCCAAGAAAGGCTTCG 443
Query 441 ATTTCTTGAGTCGCAGAAACAGAATCAGACAAAACCGGATCATCAGAGTTTAACACCATC 500
||| |||||||||||||||||||| |||||||||| ||||||||| ||||| || || |
Sbjct 444 TTTTGTTGAGTCGCAGAAACAGAATGAGACAAAACCAGATCATCAGGGTTTAGCATCAAC 503
Query 501 CTCTCTGAATCATTACACCCAATCTTTGAACCCTAGCCAGTTCTCGCTGTTTATGTATAA 560
|||||| ||||| | |||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 504 CTCTCTAAATCAGCAGACCCAATCTTTGAACCCTAGCCAGTTCTCGCTATTTATTTATAA 563
Query 561 CCATGGAGACAATACTCTGTCTCAGATCCCAGTCTCTGCATCAAATTTCAATCAGGATTA 620
||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 564 CCATGGAGATAATACTCTCTCTCAAATCCCAGTCTCTGCATCAAATTTCAATCAGGATT- 622
Query 621 TTTCTCAGCGTTACTTGAAGAATCTGAGTTGAAGAATCAGTTAATGAAGCCGGAGATTTG 680
| ||||||||||||| ||||||||||||| |||||||||||| |||||| |||| ||||
Sbjct 623 T--CTCAGCGTTACTTCAAGAATCTGAGTTTAAGAATCAGTTAGTGAAGCAGGAGCTTTG 680
Query 681 TGGTTATGATCAGAATCAGAACATGAGCATGGGTGACATCACAAACAACAAATTTC-AAG 739
|||||||||||||||| | || | ||| || |||| || ||||||| |||| ||
Sbjct 681 TGGTTATGATCAGAAT-A-----TGTGTATGAGTAACATTACCAACAACAG-TTTCCAAC 733
Query 740 ATCCTTGCGTCTCAAACAAAGAA--------G-CGGTACAAGAATCTGTCAACAACTTTG 790
||||||||||||||||||||||| | |||||||||||||||| || |||| ||
Sbjct 734 ATCCTTGCGTCTCAAACAAAGAACATTACTCGGCGGTACAAGAATCTGTGAATAACTATG 793
Query 791 GGTTGAATCAATTGATGTACAAGGAGTTTTATGGTTGTGATCAAAACATGTCTATGGGTA 850
||||||||| |||||| | ||||||||||||||||||||||| || | ||| | ||
Sbjct 794 AGTTGAATCAGTTGATGCAGAAGGAGTTTTATGGTTGTGATCAGAA-A---CTAAG--TA 847
Query 851 ACATCAATAGCAACA-GCTTTCAAAATCCTTGCGTCTCAAACACACAACATTACTCGGCG 909
||||||||||||||| | |||||| |||||||||||||||||||||||||| ||||||||
Sbjct 848 ACATCAATAGCAACAAG-TTTCAACATCCTTGCGTCTCAAACACACAACATAACTCGGCG 906
Query 910 GTAGAAGAATCTGTGAAGAACCCCTGGTTGAATCAGTTAATGCAGAATGAACTTTACGGT 969
||| ||||||||||| | |||||||||||||||||||| |||||| |||||||||| |||
Sbjct 907 GTACAAGAATCTGTGGATAACCCCTGGTTGAATCAGTTGATGCAGCATGAACTTTATGGT 966
Query 970 T 970
|
Sbjct 967 T 967
> Ahg493979 jgi|Araly1|493979|fgenesh2_kg.7__3412__AT5G41200.1
Length=891
Score = 1027 bits (556), Expect = 0.0
Identities = 801/913 (88%), Gaps = 41/913 (4%)
Strand=Plus/Plus
Query 31 TCTTCTTCTTATTCACTCGCTTTC-ACAAGTTTGAGCAATAGGCTTGAGACCATCTTCAA 89
||||| |||||||||||||| ||| ||||||||||| ||||| |||||||||||||||||
Sbjct 1 TCTTCATCTTATTCACTCGC-TTCTACAAGTTTGAGTAATAGACTTGAGACCATCTTCAA 59
Query 90 GAAAGCTTCAGAGCTTTGCACTCTTTGTGATATCGAAGCCTGCGTTATCTATTACGGACC 149
||||||||| |||||||||||||| |||||||| |||||||||| ||||||||||||||
Sbjct 60 GAAAGCTTCCGAGCTTTGCACTCTCTGTGATATTAAAGCCTGCGTCATCTATTACGGACC 119
Query 150 AGACGGAGAACTTAAGACATGGCCTAAGGAGAAAGAGAAAGTGAGAGACATTGCTCTTAG 209
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 120 AGACGGAGAACTTAAGACATGGCCTAAGGAGCGAGAGAAAGTGAGAGACATTGCTCTTAG 179
Query 210 GTATAGTCTATTGAACGAAGCATTGAGACGCAAGAAAAGCGTTAATCTTCATGGGTTCCT 269
|||||||| ||| |||||||| ||||||||||||||| ||||||||||| ||| |||||
Sbjct 180 GTATAGTCAATTAAACGAAGCCTTGAGACGCAAGAAACGCGTTAATCTTTATGACTTCCT 239
Query 270 gaacaagaagaag-aacaagggtttgaagaatccgaacaagaagatgaagaCGAGTCTT- 327
||||||||||||| || |||||||||||||| ||||| ||||||| |||||||||| ||
Sbjct 240 GAACAAGAAGAAGGAA-AAGGGTTTGAAGAACCCGAATAAGAAGAGGAAGACGAGT-TTG 297
Query 328 AAGAACGTGAAT-ATTTTAAAGTATCC-ACTCGCTGATCATTACCCTCCCGACCAAGTTT 385
||||| |||||| | || ||||||||| | || ||||||||||| |||| |||||| |
Sbjct 298 AAGAAGGTGAATGAATT-AAAGTATCCGA-TCTCTGATCATTACTCTCCTGACCAAAT-- 353
Query 386 CTCCA--CTGATTCAGTCCTTGGAACTCCATGTCTCTAAATTCCAAGAAAGGCTTCGATT 443
||||| |||||||||||||| |||||| ||||||||||| |||||||||||||||| ||
Sbjct 354 CTCCAAACTGATTCAGTCCTTAGAACTCAATGTCTCTAAAGTCCAAGAAAGGCTTCGTTT 413
Query 444 TCTTGAGTCGCAGAAACAGAATCAGACAAAACCGGATCATCAGAGTTTAACACCATCCTC 503
| |||||||||||||||| || |||||||||||||||||||||||||| || |||||||
Sbjct 414 TGTTGAGTCGCAGAAACACAAGGAGACAAAACCGGATCATCAGAGTTTAGCATCATCCTC 473
Query 504 TCTGAATCATTACACCCAATCTTTGAACCCTAGCCAGTTCTCGCTGTTTATGTATAACCA 563
||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 474 TCTGAATCAGCAGACCCAATCTTTGAACCCTAGCCAGTTCTCGCTATTTATGTATAACCA 533
Query 564 TGGAGACAATACTCTGTCTCAGATCCCAGTCTCTGCATCAAATTTCAATCAGGATTATTT 623
|||||| |||||||| ||||| |||||||||||||||||||||||||||||||||| |
Sbjct 534 TGGAGATAATACTCTCTCTCAAATCCCAGTCTCTGCATCAAATTTCAATCAGGATT-T-- 590
Query 624 CTCAGCGTTACTTGAAGAATCTGAGTTGAAGAATCAGTTAATGAAGCCGGAGATTTGTGG 683
||||||||||||| ||||||||||||| ||||| | |||| |||||| |||| |||||||
Sbjct 591 CTCAGCGTTACTTCAAGAATCTGAGTTTAAGAACCCGTTAGTGAAGCAGGAGCTTTGTGG 650
Query 684 TTATGATCAGAATCAGAACATGAGCATGGGTGACATCACAAACAACAAATTTC-AAGATC 742
|||||||||||| || || ||||| ||| ||| || ||||||| |||| || |||
Sbjct 651 TTATGATCAGAA-CA-----TGTGCATGAGTGGCATTACCAACAACAG-TTTCCAACATC 703
Query 743 CTTGCGTCTCAAACAAAGAA--------G-CGGTACAAGAATCTGTCAACAACTTTGGGT 793
|||||||||||||||||||| | |||||||||||||||| ||||||| || ||
Sbjct 704 CTTGCGTCTCAAACAAAGAACATTACTCGGCGGTACAAGAATCTGTAAACAACTATGAGT 763
Query 794 TGAATCAATTGATGTACAAGGAGTTTTATGGTTGTGATCA-AAAC-ATGTCTATGGGTAA 851
| ||||| ||| || | ||||||||||||||||||||||| |||| | | || | |||
Sbjct 764 TAAATCAGTTGCTGCAGAAGGAGTTTTATGGTTGTGATCAGAAACTAA-T-TA-G--TAA 818
Query 852 CATCAATAGCAACAGCTTTCAAAATCCTTGCGTCTCAAACACACAACATTACTCGGCGGT 911
|||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 819 CATCAATAGCAACAATTTTCAACATCCTTGCGTCTCAAACACACAACATAACTCGGCGGT 878
Query 912 AGAAGAATCTGTG 924
| |||||||||||
Sbjct 879 ACAAGAATCTGTG 891
> Ahg947831 jgi|Araly1|947831|scaffold_704060.1
Length=1052
Score = 880 bits (476), Expect = 0.0
Identities = 783/921 (85%), Gaps = 61/921 (7%)
Strand=Plus/Plus
Query 23 CTTCGTCCTC-T--TCTTCTTATTCACTCGCTTTC-ACAAGTTTGAGCAATAGGCTTGAG 78
|||| ||||| | ||||||||||||||||| ||| || |||||||||||||| ||||||
Sbjct 67 CTTCTTCCTCTTGCTCTTCTTATTCACTCGC-TTCTACCAGTTTGAGCAATAGACTTGAG 125
Query 79 ACCATCTTCAAGAAAGCTTCAGAGCTTTGCACTCTTTGTGATATCGAAGCCTGCGTTATC 138
|||||||||||||||||||| |||||||||||||| |||||||| ||||||||||| |||
Sbjct 126 ACCATCTTCAAGAAAGCTTCCGAGCTTTGCACTCTCTGTGATATTGAAGCCTGCGTCATC 185
Query 139 TATTACGGACCAGACGGAGAACTTAAGACATGGCCTAAGGAGAAAGAGAAAGTGAGAGAC 198
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 186 TATTACGGACCAGACGGAGAACTTAAGACATGGCCTAAGGAGCGAGAGAAAGTGAGAGAC 245
Query 199 ATTGCTCTTAGGTATAGTCTATTGAACGAAGCATTGAGACGCAAGAAAAGCGTTAATCTT 258
||||||||||||||||||| ||| |||||||| ||||||||||||||| |||||||||||
Sbjct 246 ATTGCTCTTAGGTATAGTCAATTAAACGAAGCCTTGAGACGCAAGAAACGCGTTAATCTT 305
Query 259 CATGGGTTCCTgaacaagaagaagaacaagggtttgaagaatccgaacaagaagatgaag 318
||| |||||||||||||||||| | ||||||||||||||||||||||||| || ||||
Sbjct 306 TATGACTTCCTGAACAAGAAGAAGGAGAAGGGTTTGAAGAATCCGAACAAGAGGAGGAAG 365
Query 319 aCGAGTCTT-AAGAACGTGAATATTTTAAAGTATCCACTCGCTGATCATTACCCTCCCGA 377
|||||| || ||||| |||||| | |||||||||||| || ||||||||||| |||| ||
Sbjct 366 ACGAGT-TTGAAGAAAGTGAATGTATTAAAGTATCCAATCTCTGATCATTACTCTCCTGA 424
Query 378 CCAAGTTTCTCCA--CTGATTCAGTCCTTGGAACTCCATGTCTCTAAATTCCAAGAAAGG 435
|||| | ||||| |||||||||||||| |||||| ||||||||||| |||||||||||
Sbjct 425 CCAAAT--CTCCAAACTGATTCAGTCCTTAGAACTCAATGTCTCTAAAGTCCAAGAAAGG 482
Query 436 CTTCGATTTCTTGAGTCGCAGAAACAGAATCAGACAAAACCGGATCATCAGAGTTTAACA 495
||||| ||| ||||||| |||||||| || |||||||||||||||||||||||||| ||
Sbjct 483 CTTCGTTTTGTTGAGTCTCAGAAACACAAGGAGACAAAACCGGATCATCAGAGTTTAGCA 542
Query 496 CCATCCTCTCTGAATCATTACACCCAATCTTTGAACCCTAGCCAGTTCTCGCTGTTTATG 555
||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||
Sbjct 543 TCATCCTCTCTGAATCATCAGACCCAATCTTTGAACCCTAGCCAGTTCTCGCTATTTATT 602
Query 556 TATAACCATGGAGACAATACTCTGTCTCAGATCCCAGTCTCTGCATCAAATTTCAATC-A 614
|||||||||||||| |||||||| ||||| |||||| ||||||||||||||||||||| |
Sbjct 603 TATAACCATGGAGATAATACTCTCTCTCAAATCCCACTCTCTGCATCAAATTTCAATCCA 662
Query 615 GGATTATTTCTCAGCGTTACTTGAAGAATCTGAGTTGAAGAATCAGTTAATGAAGCCGGA 674
| ||| | | | | || ||||||||| | | | | | |||||| |||
Sbjct 663 G-ATT-T-----A-C-T-AC---AAGAATCTG-GCT------T--G--A-TGAAGCAGGA 697
Query 675 GATTTGTGGTTATGATCAGAATCAGAACATGAGCATGGGTGACATCACAAACAACAAATT 734
| ||||||||||||| | ||||||||| ||| ||||||| || |||||||| ||
Sbjct 698 GCTTTGTGGTTATGA-C-----CAGAACATGTTTATGAGTGACATTACCAACAACAAGTT 751
Query 735 TCAAGATCCTTGCGTCTCAAACAAAGAAG----C--GGT---ACAAGAATCTGTCAACAA 785
|||| |||||||||||||||||| |||| | ||| || |||| |||| || ||
Sbjct 752 TCAACATCCTTGCGTCTCAAACACAGAACATTACTCGGTGGTACCAGAACCTGTGAATAA 811
Query 786 CTTTGGGTTGAATCAATTGATGTACAAGGAGTTTTATGGTTGTGATCAAAACATGTCTAT 845
|| |||||| ||||| |||||| || ||| ||||||||||||||||| ||| |||
Sbjct 812 CTATGGGTTAAATCAGTTGATG--CA-GGACTTTTATGGTTGTGATCAGAAC----CTAA 864
Query 846 GGGTAACATCAATAGCAACAGCTTTCAAAATCCTTGCGTCTCAAACACACAACATTACTC 905
| ||||||||||||||||| ||| ||| || ||| ||||||||||||||||||||||||
Sbjct 865 G--TAACATCAATAGCAACAACTTCCAACATTCTTTCGTCTCAAACACACAACATTACTC 922
Query 906 GGCGGTAGAAGAATCTGTGAA 926
|||||| |||||||||||||
Sbjct 923 TGCGGTACAAGAATCTGTGAA 943
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36902983656
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5