BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41210.1
Length=1078
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947599 jgi|Araly1|947599|scaffold_703828.1 1192 0.0
> Ahg947599 jgi|Araly1|947599|scaffold_703828.1
Length=778
Score = 1192 bits (645), Expect = 0.0
Identities = 727/768 (95%), Gaps = 0/768 (0%)
Strand=Plus/Plus
Query 97 AGACGAAAAAGAAGATGATGAAGCTCAAAGTGTATGCAGATCGAATGTCACAGCCATCAC 156
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 7 AGACGAAGAAGAAGATGATGAAGCTCAAAGTGTATGCAGATCGGATGTCACAGCCATCTC 66
Query 157 GTGCTGTTATCATATTCTGCAAGGTTAATGGAATCCAATTCGATGAGGTCTTGATTTCCT 216
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 67 GTGCTGTTATCATATTCTGCAAGGTTAATGGAATCCAATTCGATGAGGTTTTGATATCCT 126
Query 217 TGGCGAAGCGTCAACAATTATCTCCTGAATTCAAAGATATTAACCCATTGGGGAAAGTTC 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 TGGCGAAGCGTCAACAATTATCTCCTGAATTCAAAGATATTAACCCATTGGGGAAAGTTC 186
Query 277 CAGCTATTGTTGATGGCAGGCTTAAGCTCTTTGAGAGTCACGCAATCCTGATATATCTAT 336
||||||||||||||||||| ||||||||||| ||||||||||| ||| |||||||||| |
Sbjct 187 CAGCTATTGTTGATGGCAGACTTAAGCTCTTCGAGAGTCACGCTATCTTGATATATCTTT 246
Query 337 CCTCGGCGTTTCCAAGTGTTGCTGATCATTGGTATCCAAATGATCTATCCAAAAGAGCCA 396
|||| || || |||||||| |||||||||||||| || |||||||| |||||||||||||
Sbjct 247 CCTCTGCATTCCCAAGTGTAGCTGATCATTGGTACCCGAATGATCTTTCCAAAAGAGCCA 306
Query 397 AGATTCACTCAGTTTTGGATTGGCATCACACCAATTTACGTCGTGGTGCAGCTGGATATG 456
|||| ||||||||| |||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 307 AGATCCACTCAGTTATGGATTGGCATCACACTAATTTACGTCCTGGTGCAGCTGGATATG 366
Query 457 TTCTGAATAGTGTACTAGGTCCAGCTCTCGGTCTTCCTCTGAATCCGAAAGCAGCTGCTG 516
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 367 TTCTGAATAGTGTACTAGCTCCAGCTCTCGGTCTTCCTCTGAATCCAAAAGCAGCTGCTG 426
Query 517 AAGCTGAGCAGTTACTAACAAAGTCTCTGTCCACTCTAGAGACTTTTTGGCTTAAGGGCA 576
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 427 AAGCTGAGAAGTTACTAACAAAGTCTCTGTCCACTCTAGAGACTTTTTGGCTTAAGGGAA 486
Query 577 ATGCTAAATTCTTGCTCGGAAGCAACCAACCATCTATAGCTGATCTCAGCCTTGTATGCG 636
|||| || ||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 487 ATGCCAAGTTCTTGCTCGGTAGCAACCAACCATCTATAGCTGATCTGAGCCTTGTATGCG 546
Query 637 AACTTATGCAGCTGCAGGTTTTGGATGACAAAGATCGTCTTAGATTGCTCAGCACTCATA 696
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 547 AACTTATGCAGCTGCAGGTTTTGGATGACAAAGATCGTCTTAGATTGCTCAGCCCTCATA 606
Query 697 AGAAAGTTGAACAATGGATTGAGAATACGAAAAAAGCAACAATGCCTCACTTTGATGAGA 756
||||||| |||||||||||||||||||||| ||| ||||||||||| |||||||||||||
Sbjct 607 AGAAAGTAGAACAATGGATTGAGAATACGAGAAAGGCAACAATGCCACACTTTGATGAGA 666
Query 757 CCCATGAGATCCTTTTCAAAGTCAAAGAAGGATTCCAGAAGCGGCGAGAGATGGGAACCT 816
||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||
Sbjct 667 CCCATGAGATCCTTTTCAAAGCCAAACAAGGATTCCAGAAGCAGCGAGAGATGGGAACCG 726
Query 817 TATCTAAACCGGGTCTTCAATCCAAGATCTAAGAACTTAGAACAAAAC 864
|||||||||||||||||||||| ||||| ||| |||||||||||||||
Sbjct 727 TATCTAAACCGGGTCTTCAATCTAAGATGTAACAACTTAGAACAAAAC 774
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40143431601
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5