BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41250.1
Length=1686
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493853 jgi|Araly1|493853|fgenesh2_kg.7__3286__AT5G41250.1 2364 0.0
> Ahg493853 jgi|Araly1|493853|fgenesh2_kg.7__3286__AT5G41250.1
Length=1669
Score = 2364 bits (1280), Expect = 0.0
Identities = 1553/1683 (92%), Gaps = 25/1683 (1%)
Strand=Plus/Plus
Query 1 ATGGTTTCAAAGAGAAAGTCAAGAACTTCAAAGACTATAGAAGATTCTTGTATCCATCTA 60
||||| ||||||||||||| ||||||||||||| | | |||||||||||||||||||
Sbjct 1 ATGGTCTCAAAGAGAAAGTTAAGAACTTCAAAG--T-T---AGATTCTTGTATCCATCTA 54
Query 61 TGttctgtcttcttcagattcttgtactatactcttcctgcattatttctcttcttcttt 120
|||||||| |||||||||| ||| | |||||||||| |||| ||||||||||||||||
Sbjct 55 TGTTCTGTTTTCTTCAGATCCTTTTTCTATACTCTTTCTGC---ATTTCTCTTCTTCTTT 111
Query 121 cttctttatctttgtttatctttcACCACCGGAATCTCCTACAACAACTTCCATATGTGT 180
|||||||| ||||| |||||||||| || || ||| ||| ||||||||||||| || |||
Sbjct 112 CTTCTTTACCTTTGGTTATCTTTCAACAGCGTAATTTCCCACAACAACTTCCACATATGT 171
Query 181 ATCTTCTCTCGAAAGTTCAACGACCCTTATTGTAACACGGCTGGTTCTAAACCCGGTTTC 240
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 172 ATCTTCTCTCGGAAGTTCAACGATCCTTATTGTAACACGGCTGGTTCTAAACCCGGTTTT 231
Query 241 CAAATAATTTCTGAAGAAAATGTAACTTTCGCCGGAGAGATCGCAGGAGATAGAGTTT-C 299
||||||| ||||||||||||| ||||||| ||||||||| ||||||||||||||||| |
Sbjct 232 CAAATAAGCTCTGAAGAAAATGAAACTTTCACCGGAGAGACCGCAGGAGATAGAGTTTCC 291
Query 300 TAAG-GATCACAACAAGATTCTTAATTCAGTTCCTGTTCAAGAACACAAAACAAAGAACA 358
||| || || ||||| |||| |||||||||||| ||||||||||||| | |||||||
Sbjct 292 GAAGAGA-AAC-CCAAGAATCTTGATTCAGTTCCTGATCAAGAACACAAACCCAAGAACA 349
Query 359 AGGTTGATCTCAATTCACTCATTGAACTAAAAGCCGAGGAAGAATACAGCAAATACATCA 418
|||| ||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 350 AGGTGGATCTCAGTTCACTCATTGACCTAAAAGCCGAGGAAGAATACAGAAAATACATCA 409
Query 419 AACCTACGAGTGAAGATGAGGGATATGCGTTAAGGGCAGCCATCAAGTATCTTTACCTAC 478
|||| | ||||||||| |||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 410 AACCGAAGAGTGAAGAAGAGGGATATGCGCTAAGGGCAGTCATCAAGTATCTTTACCTAC 469
Query 479 AAAGATCATGGCTATCTCCGGGAGATGAAAACCTCAATAAACCGCGATCGTGTGAAGGTA 538
| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 470 AGAGATCATGGCTATCTCCGGGAGATGAAAACCTTGATAAACCGCGATCGTGTGAAGGTA 529
Query 539 AAGGAGTTTACGTTTATGATTTACCGTCAAAATTCAACAGCGATTTGTTGGTAGGATGCA 598
|||| ||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 530 AAGGGGTTTATGTTTATGATTTACCGTCAAAATTCAACAGAGATTTGTTGGTTGGATGCA 589
Query 599 ACGATATACTTCCAGGGGTTAACTTGTGTAGCTACTTCAAGAATGAAGGCTTTGGAGAAG 658
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 590 ACGATATACTTCCAGGGGTTGACTTGTGTAGTTACTTCAAGAATGAAGGCTTTGGAGAAG 649
Query 659 CTATTAAGAATCTTGGCAAAGGTTGGTTTGCTACACACATGTATTCTCTTGAGCCCATCT 718
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 650 CTATTAAGAATCTTGGTAAAGGTTGGTTTGCAACACACATGTATTCTCTTGAGCCTATCT 709
Query 719 TACACTCTAGGGTTTTGAAGCATCCTTGTAGGGTTTACAACGAGACCCAAGCTAAGCTCT 778
||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
Sbjct 710 TACACTCTAGGGTTTTGAAGCATCCTTGTAGGGTTTACAACGAAAGCCAAGCTAAGCTTT 769
Query 779 TCTTTGTCCCTTACTATGGCGGGTATGATGTTTTGAGATGGCACTATAGGAATGTTTCTG 838
||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 770 TCTATGTCCCATACTATGGCGGTTATGATGTTTTGAGATGGCACTATAGGAATGTTTCTG 829
Query 839 AAGATGTGAAGGACCGTTTGGGGATCGAGGTTTTAAAATGGCTTAATTCAAAGGAATCAT 898
|||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||
Sbjct 830 AAGATGTGAAGGACCGGTTGGGGATAGAGGTTTTAAAATGGCTTGATTCAAAGGAATCAT 889
Query 899 GGAGGAGAAACGCCGGGAAAGATCATGTGTTCGTTCTAGGAAAAATAACTTGGGATTTTA 958
|||||||||| |||||||||||||||||||| ||||| |||||||| ||||||||||| |
Sbjct 890 GGAGGAGAAATGCCGGGAAAGATCATGTGTTTGTTCTCGGAAAAATTACTTGGGATTTCA 949
Query 959 GGAGAGATAAGGACCCTTGGGGCTCAAGGTTCCTTGAGCTACAAGAAATGCAAAACCCTA 1018
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 GGAGAGATAAGGTCCCTTGGGGCTCAAGGTTCCTTGAGCTACAAGAAATGCAAAACCCTA 1009
Query 1019 CCAAGCTACTCATAGAAAGACAGCCATGGCAGGTCAACGACATCGCCATTCCTCACCCAA 1078
||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1010 CCAAGCTACTCATTGAAAGACAGCCGTGGCAGGTCAACGATATCGCCATTCCTCACCCAA 1069
Query 1079 CTTATTTCCATCCGCGAACAGATGATGATATCACCCGCTGGCAGATCAAGATCATGAGTA 1138
|||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 1070 CTTATTTCCATCCGAGAACAGATGACGATATCACCAGCTGGCAGATCAAGATCATGAGTA 1129
Query 1139 AACTTCGCCGGAATCTAGTAAGCTTCG-CGGGAGGTGCAAGACCCGATAACCCTAATAAC 1197
||| ||||| | ||||||||||||||| |||| |||||||||||||| |||||| |||||
Sbjct 1130 AACCTCGCCCGCATCTAGTAAGCTTCGCCGGG-GGTGCAAGACCCGAGAACCCTGATAAC 1188
Query 1198 ATCCGATCAACGCTAATCGAGCAATGC--A---T-ATCTTCCAACCAATGTCGGTTCTTA 1251
||||||||||||||||||||||||||| | | ||||||||||||||||||||||||
Sbjct 1189 ATCCGATCAACGCTAATCGAGCAATGCGTATCTTCATCTTCCAACCAATGTCGGTTCTTG 1248
Query 1252 AATTGTACAAACGAAAGCTGCACGAATCCCAAGAATGTCCTTGATTTGTTTCAAGATTCA 1311
|||||||||||| | |||||| |||||| |||||||| ||||||||||||||||||||
Sbjct 1249 GATTGTACAAACGGAGGCTGCAAGAATCCAAAGAATGTTCTTGATTTGTTTCAAGATTCG 1308
Query 1312 GAGTTTTGTCTGCAGCCGCCTGGAGATAGTGCAACAAGGAGATCAGTATTTGATTCACTA 1371
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1309 GAGTTTTGTCTGCAGCCGCCTGGAGATAGTGCAACAAGGAGATCGGTATTCGATTCACTA 1368
Query 1372 ATCTCCGGCTGCATTCCGGTGATCTTTACTCCGTACACAGCTTATTACCAGTACGCGTGG 1431
|||||||| || ||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1369 ATCTCCGGTTGTATTCCTGTGATCTTTACTCCGTACACGGCTTATTACCAGTACGCGTGG 1428
Query 1432 CATCTTCCTGAGGATCATCGGAAGTACTCAGTGTATATAAGCGAACAAGATGTGAAGGAA 1491
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1429 CATCTTCCTGAGGATCATCGGAGGTACTCAGTGTATATAAGCGAACAAGATGTGAAGGAA 1488
Query 1492 AAGAGAGTAAATGTGGTGGAGATATTGAAGGCAAAGACTCTAAAGGAGAAAAAGGATATG 1551
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1489 AAGAGAGTAAATGTGGTGGAGATATTGAAGGCAAAGACTCTAAGGGAGAAAAAGGATATG 1548
Query 1552 AAAAGTTACAT-AGTTCAACAGCTT-TTGCCTGGATTGGTATATGGAGACTCCAATGCTA 1609
| ||||||||| | |||| ||| || |||||||| ||||| ||||||||||| |||||||
Sbjct 1549 AGAAGTTACATCA-TTCATCAG-TTGTTGCCTGGTTTGGTCTATGGAGACTCTAATGCTA 1606
Query 1610 AGTTTGAAAAGTTTCGAGATGCTTTTGATATTACTTTTGATTGTTTACTTAAGAAAATCA 1669
||||||| ||||||||||||||||||||||||||||||||| |||| ||| ||||||| |
Sbjct 1607 AGTTTGAGAAGTTTCGAGATGCTTTTGATATTACTTTTGATAGTTTGCTTGAGAAAATTA 1666
Query 1670 ACA 1672
|||
Sbjct 1667 ACA 1669
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63229806700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5