BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41260.1
Length=2192
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493852 jgi|Araly1|493852|fgenesh2_kg.7__3285__AT5G41260.1 3040 0.0
Ahg924606 jgi|Araly1|924606|scaffold_200167.1 1637 0.0
> Ahg493852 jgi|Araly1|493852|fgenesh2_kg.7__3285__AT5G41260.1
Length=2133
Score = 3040 bits (1646), Expect = 0.0
Identities = 1914/2039 (94%), Gaps = 36/2039 (2%)
Strand=Plus/Plus
Query 1 TCAAAGCTCACACACACGACCACTCTATTCCTCCTTTAACCTTTGTGTTTGTCAATTTGT 60
||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||| |
Sbjct 1 TCAAAGCTCACACACACGAACACTCGATTCCTCGTTTAACCTTTGTGTTTGTCAATTT-T 59
Query 61 -GTTTCCTCTTTTGTCGACTCATTTCTCGATTCAATCTCGAttttttttttttttttttt 119
||||||||||||| ||| |||||||||||||| |||||||||| | ||||| |||| |
Sbjct 60 CGTTTCCTCTTTTGACGATTCATTTCTCGATTCGATCTCGATTTGTGTTTTTCTTTTACT 119
Query 120 tATGGAAAT-CTAATGAACtttttttATGGATTTGATCTGTTAAAGTTTCGATTAAGAAG 178
| ||| ||| || ||||| |||||||| |||||||||||||| |||||||||||||||||
Sbjct 120 TCTGG-AATACTGATGAAGTTTTTTTAAGGATTTGATCTGTTGAAGTTTCGATTAAGAAG 178
Query 179 ATAGTGGTTTA-GGTTTACGGTTTTGTAATTG-A---TTTATTATCTGTAATGGGTTGTG 233
||||| ||||| |||||| || |||||||||| | ||| ||||||| |||||||||||
Sbjct 179 ATAGTTGTTTAGGGTTTATGG-TTTGTAATTGAATTTTTTTTTATCTGGAATGGGTTGTG 237
Query 234 AGGTTTCAAAGTTATCTGCACTTTGTTGTGTTTCAGAGTCTGGAAGATCGAATCCTGATG 293
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 238 AGGTTTCAAAGCTATCTGCACTTTGTTGTGTTTCAGAATCTGGAAGATCGAATCCTGATG 297
Query 294 TTACAGGCTTAGATGAGGAAGGGAGAGGTGAATCGAATGATTTGCCTCAATTTCGTGAGT 353
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
Sbjct 298 TTACAGGCTTAGATGAAGAAGGGAGAGGTGAATCGAATGATTTGCCTCAGTTTCGTGAAT 357
Query 354 TCTCTATAGAGACTATAAGGAACGCAACTTCAGGATTTGCAGCAGAGAATATAGTTTCAG 413
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 358 TCTCTATAGAGACTATAAGGAACGCTACTTCAGGATTTGCAGCAGAGAATATAGTTTCAG 417
Query 414 AGCATGGTGAGAGAGCTCCTAATGTTGTCTATAAAGGCAAGCTTGAGAATCAAAGACGTA 473
||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||
Sbjct 418 AGCATGGTGAGAGAGCTCCAAATGTTGTTTATAAAGGGAAGCTTGAGAATCAAAGACGTA 477
Query 474 TTGCTGTCAAAAGGTTTAACCGGAAATCTTGGCCTGATTCTCGTCAATTCTTGGAAGAAG 533
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 478 TTGCTGTCAAAAGGTTTAACAGGAAATCTTGGCCTGAGTCTCGTCAATTCTTGGAAGAAG 537
Query 534 CCAAAGCTGTTGGTCAATTACGGAATCATAGGATGGCAAATCTACTTGGGTGTTGTTATG 593
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 538 CCAAAGCTGTTGGTCAATTACGGAATCATAGGATGGCAAATCTACTTGGATGTTGCTATG 597
Query 594 AAGATGAAGAGAGACTACTTATTGCAGAGTTTATGCCTAATGAAACTTTGGCAAAACATC 653
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 AAGGTGAAGAGAGACTACTTATTGCAGAGTTTATGCCTAATGAAACTTTGGCAAAACATC 657
Query 654 TTTTCCACTGGGAGTCACAGCCAATGAAGTGGGCGATGCGACTGAGAGTAGCTTTGCATA 713
||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||
Sbjct 658 TTTTCCACTGGGAGTCACAACCAATGAAGTGGGCGATGCGTCTAAGAGTAGCTTTGCATA 717
Query 714 TTGCTCAGGCGCTAGAGTATTGTACCAGCAAAGGACGTGCACTTTACCATGACCTAAATG 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TTGCTCAGGCGCTAGAGTATTGTACCAGCAAAGGACGTGCACTTTACCATGACCTAAATG 777
Query 774 CTTATAGAGTTCTCTTTGATGATGATGCAAATCCAAGACTTTCATGCTTTGGTTTGATGA 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 CTTATAGAGTTCTCTTTGATGATGATGCAAATCCAAGACTTTCATGCTTTGGTTTGATGA 837
Query 834 AAAACAGTAGAGATGGAAAGAGTTATAGCACTAACCTGGCATTCACTCCTCCCGAGTATC 893
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 838 AAAACAGTAGAGATGGAAAGAGTTACAGCACTAACCTGGCATTCACTCCTCCCGAGTATC 897
Query 894 TGAGGACAGGTCGCGTGACACCTGAAAGTGTAATATACAGCTTTGGAACTCTATTACTTG 953
||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 898 TGAGGACCGGTCGCGTGACACCCGAAAGTGTGATATACAGCTTTGGAACTCTATTACTTG 957
Query 954 ACCTTCTGAGTGGAAAGCATATACCTCCAAGCCATGCGTTGGACCTCATACGGGACAGGA 1013
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 958 ACCTTCTGAGTGGAAAGCACATACCTCCAAGCCATGCGTTGGACCTCATACGGGACAGGA 1017
Query 1014 ACATTCAGATGCTGATGGATTCAGGTTTGGAAGGTCAATTTTCGAGTGACGATGGAACTG 1073
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||
Sbjct 1018 ACATTCAGATGCTGATGGATTCAGGTTTGGAGGGTCAATTTTCAAGTGACGATGGGACTG 1077
Query 1074 AATTAATAAGGTTAGCTTCAAGATGCTTGCAATATGAACCCCGAGAGCGGCCTAACCCAA 1133
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1078 AATTAATAAGGTTAGCTTCAAGATGCTTGCAGTATGAACCCCGAGAGCGGCCTAACCCAA 1137
Query 1134 AATCTTTAGTCTCTGCAATGATTCCTCTTCAGAAAGATCTTGAGATTGCTTCTCATCAAT 1193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 AATCTTTAGTCTCTGCAATGATTCCTCTTCAGAAAGATCTTGAGATTGCTTCTCATCAAT 1197
Query 1194 TGTTGGGCGTACCTAACAGTGCCACAACGAC-AGCTCTTTCACCTCTTGGCGAAGCATGC 1252
|||||||| ||||||||||||||||||| || | |||||||||| |||||||||||||||
Sbjct 1198 TGTTGGGCATACCTAACAGTGCCACAACCACCA-CTCTTTCACCACTTGGCGAAGCATGC 1256
Query 1253 CTAAGATCAGATCTAACTGCCATACATGAGATCATTGAGAAGCTTGGATATAAGGATGAC 1312
|||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1257 CTAAGACCAGATCTAACTGCTATACATGAGATCATTGAAAAGCTTGGATATAAGGATGAC 1316
Query 1313 GAGGGTGCAACCACAGAGCTTTCTTTCCAGATGTGGACCGACCAGATGCAGGACACATTG 1372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 GAGGGTGCAACCACAGAGCTTTCTTTCCAGATGTGGACCGACCAGATGCAGGACACATTG 1376
Query 1373 GTCTTCAAGAAAAAGGGGGATTCTGCATTCCGACATAAAGACTTTGCAAAGGCCATCGAA 1432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 GTCTTCAAGAAAAAGGGGGATTCTGCATTCCGACATAAAGACTTTGCAAAGGCCATCGAA 1436
Query 1433 TGCTATTCTCAGTTCATCGAGGTAGGTACAATGGGTTCCCCAACTGTTCATGCAAGACAG 1492
|| | ||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
Sbjct 1437 TGTTTTTCTCAGTTCATCGAGGTAGGTACAATGGTTTCCCCAACTGTTTATGCAAGAC-G 1495
Query 1493 -AGTCTGTGTTACCTAATGAATGATATGCCTAGAGAAGCACTAAACAATGCAATGCAAGC 1551
||||| ||||||||||||||||| ||||||| |||||||||||| |||||||||||||
Sbjct 1496 TAGTCTATGTTACCTAATGAATGAGATGCCTAAAGAAGCACTAAATGATGCAATGCAAGC 1555
Query 1552 ACAAGTCATATCTCCTGCTTGGCATATCGCATCGTATCTCCAAGCTGTAGCTTTGTCAGC 1611
||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1556 CCAAGTCATATCTCCTGCGTGGCACATCGCATCCTATCTCCAAGCTGTAGCTTTGTCAGC 1615
Query 1612 TCTAGGACAAGAGAACGAAGCACACACTGCTCTAAAAGACGGTGCAATGCTTGAAAGCAA 1671
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1616 TCTAGGACAAGAGAATGAAGCACACGCTGCTCTAAAAGACGGTGCAATGCTTGAAAGCAA 1675
Query 1672 AAGAAACCCTTTGTGATTATAAGCAACACAAAGAGGAGAAACTGGAGTACAAGAGAAATA 1731
||||||| ||||||||| ||||| || | ||||||||||||||||||| | |
Sbjct 1676 AAGAAACACTTTGTGATAATAAGTAAAAGGAAGAGGAGAAACTGGAGTA-A-------T- 1726
Query 1732 TAACCATCCTTTACGCTAACCCATACACCCGAAGAACCACTGTCGCAACATTGTATTTAA 1791
|| | || |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1727 ---CC-T--TT-ACGCTAACCCATACACCCGAAGAACCACTGTCTCAACATTGTATTTAA 1779
Query 1792 GATCAAAGCATAACAAGTCTACAGCGATTGTTCCTTTCCGAAGCCTTGATCATCACATCA 1851
||||||||||| ||||||||||| | ||||||||||||| ||||||||||||||||||||
Sbjct 1780 GATCAAAGCATTACAAGTCTACATCAATTGTTCCTTTCCAAAGCCTTGATCATCACATCA 1839
Query 1852 CATTACTGGTTAGTCTGGTTTTTATTTCAGTTTAGTGCTCCATTTTGCAAGATCCGCGGT 1911
| | ||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1840 C-T----GGTTAGTCTGGTTTTTATTTCAGTTTAGTGC-CCGTTTTGCAAGATCCGCGGT 1893
Query 1912 TCAAGCCACTGTGATTATTCGATTACAGCGAGTGGACTGTGTTTATTGTTGTTGTTTAAG 1971
||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||| |
Sbjct 1894 TCAAGCCACTGCGATTCTTCGATTACAGTGAGTGGACTGTGTTTATTGTTGTTGTTTTGG 1953
Query 1972 TTCAATGGTGCAGACGTGTTTCGTATCATAGAGAAGAAAAGAAGTGTCTATGGAGATAT 2030
|| ||| || ||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1954 TTGAATAGTACAGACGTGTTTGGTATCATAGAGAAGAAAAGAAGTGTCCATGGAGATAT 2012
> Ahg924606 jgi|Araly1|924606|scaffold_200167.1
Length=1504
Score = 1637 bits (886), Expect = 0.0
Identities = 1285/1476 (87%), Gaps = 34/1476 (2%)
Strand=Plus/Plus
Query 219 CTGTAATGGGTTGTGAGGTTTCAAAGTTATCTGCACTTTGTTGTGTTTCAGAGTCTGGAA 278
||| |||||||||||||||||||||||||| |||| ||||||||||||| || || |||
Sbjct 16 CTGAAATGGGTTGTGAGGTTTCAAAGTTATGTGCATTTTGTTGTGTTTCTGAACCT-GAA 74
Query 279 -GATCGAATCCT-GATGTTACAGGCTTAGATGAGGA-AGGGAGAGGTGAATCGAATGATT 335
|||| |||| | || || ||||| |||||||| || | ||||||||||| ||||||||
Sbjct 75 GGATCCAATCATGGA-GTCACAGGATTAGATGAAGATA-GGAGAGGTGAAGGGAATGATT 132
Query 336 TGCCTCAATTTCGTGAGTTCTCTATAGAGAC-TATAAGGAACGCAACTTCAGGATTTGC- 393
|||||||||||||||| ||||| || ||||| | ||||||||||||| |||||||||||
Sbjct 133 TGCCTCAATTTCGTGAATTCTCAATTGAGACGT-TAAGGAACGCAACATCAGGATTTGCT 191
Query 394 AGCAGAGAATATAGTTTCAGAGCATGGTGAGAGAGCTCCTAATGTTGTCTATAAAGGCAA 453
| ||||||||||||| |||||||||||||| | |||||| |||||||| |||||||| ||
Sbjct 192 A-CAGAGAATATAGTATCAGAGCATGGTGAAAAAGCTCCAAATGTTGTGTATAAAGGGAA 250
Query 454 GCTT-GAGAATCAAAGACGTATTGCTGTCAAAAGGTTTAACCGGAAATCTTGGCCTGATT 512
|| || |||||||||||||||||||| ||||||||||| ||||| ||||||||||||
Sbjct 251 -ATTGGATAATCAAAGACGTATTGCTGTTAAAAGGTTTAATAGGAAAGCTTGGCCTGATT 309
Query 513 CTCGTCA-ATTCTTGGAAGAAGCCAAAGCTGTTGGTCAATTACGGAATCATAGGATGGCA 571
||||||| ||| |||| ||||| |||||||||||||||||| ||||| |||| ||||||
Sbjct 310 CTCGTCAGTTTC-TGGAGGAAGCTAAAGCTGTTGGTCAATTAAGGAATTATAGAATGGCA 368
Query 572 AATCTACTTGGGTGTTGTTATGAAGATGAAGAGAGACTACTTATTGCAGAGTTTATGCCT 631
||||| ||||| ||||||||||||| |||||||||||| ||| |||| ||||||||||||
Sbjct 369 AATCTTCTTGGATGTTGTTATGAAGGTGAAGAGAGACTTCTTGTTGCTGAGTTTATGCCT 428
Query 632 AATGAAACTTTGGCAAAACATCTTTTCCACTGGGAGTCACAGCCAATGAAGTGGGCGATG 691
|||||||||||||| || ||||||||||| ||||||||||| || ||||||||||| |||
Sbjct 429 AATGAAACTTTGGCTAAGCATCTTTTCCATTGGGAGTCACAACCGATGAAGTGGGCAATG 488
Query 692 CGACTGAGAGTAGCTTTGCATATTGCTCAGGCGCTAGAGTATTGTACCAGCAAAGGACGT 751
||||| ||||||||||| ||||||||||| || |||| |||||||| |||||||||||
Sbjct 489 CGACTAAGAGTAGCTTTACATATTGCTCAAGCTTTAGAATATTGTACTGGCAAAGGACGT 548
Query 752 GCACTTTACCATGACCTAAATGCTTATAGAGTTCTCTTTGATGATGA-TGCAAATCCAAG 810
|| || |||||||| ||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 549 GCGCTCTACCATGATTTAAATGCTTATAGAGTTCTCTTTGATGATGACT-CAAATCCAAG 607
Query 811 ACTTTCATGCTTTGGTTTGATGAAAAACAGTAGAGATGGAAAGAGTTATAGCACTAACCT 870
||||| ||||||||| |||||||||| ||||||||||||||||||||||| || |||||
Sbjct 608 GCTTTCGTGCTTTGGTCTGATGAAAAATAGTAGAGATGGAAAGAGTTATAGTACCAACCT 667
Query 871 GGCATTCACTCCTCCCGAGTATCTGAGGACAGGTCGCGTGACACCTGAAAGTGTAATATA 930
||| |||||||||||||||||||| || ||||||||||||||||| ||||| || || ||
Sbjct 668 GGCGTTCACTCCTCCCGAGTATCTCAGAACAGGTCGCGTGACACCAGAAAGCGTGATGTA 727
Query 931 CAGCTT-TGGAACTCTATTACTTGACCTTCTGAGTGGAAAGCATATACCTCCAAGCCATG 989
||| || ||||||||| || ||||| ||||| |||||||| ||||| |||||||||||||
Sbjct 728 CAG-TTATGGAACTCTGTTGCTTGATCTTCTTAGTGGAAAACATATTCCTCCAAGCCATG 786
Query 990 CGT-TGGACCTCATACGGGACAGGAACATTCAGATGCTGATGGATTCAGGTTTGGAAGGT 1048
| | |||||||||||||||||||||||||||| ||| |||| || ||| | ||||| |||
Sbjct 787 C-TCTGGACCTCATACGGGACAGGAACATTCAAATGTTGATCGACTCATGCTTGGAGGGT 845
Query 1049 CAATTTTCGAGTGACGATGGAACTGAATTAATAAGGTTAGCTTCAAGATGCTTGCAATAT 1108
|||||||| || ||||| || |||||| ||||| |||||||||| ||||||||||| |||
Sbjct 846 CAATTTTCAAGCGACGACGGGACTGAACTAATACGGTTAGCTTCTAGATGCTTGCAGTAT 905
Query 1109 GAACCCCGAGAGCGGCCTAACCCAAAATCTTTAGTCT-CTGCAATGATTCCTCTTCAGAA 1167
|| ||||||||||||||||||||||| ||| |||| | |||||||||||||||| |||||
Sbjct 906 GAGCCCCGAGAGCGGCCTAACCCAAAGTCTCTAGT-TACTGCAATGATTCCTCTACAGAA 964
Query 1168 AGATCTTGAGATTGCTTCTCATCAATTGTTGGGCGTACCTAA-CAGTGCCACAACGACAG 1226
|||||||||| | ||||||||||| || ||||| |||| || ||| || ||||||||
Sbjct 965 GGATCTTGAGACTCCTTCTCATCAACTGATGGGCATACC-AAGCAGCGCTTCAACGACAC 1023
Query 1227 CTCTTTCACCTCTTGGCGAAGCATGCCTAAGATCAGATCTAACTGCCATACATGAGAT-C 1285
| |||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 1024 CCCTTTCACCACTTGGAGAAGCATGCCTAAGAACAGATCTAACTGCCATACATGAGATTC 1083
Query 1286 ATTGAGAAGCTTGGATATAAGGATGACGAGGGTGCAACCACAGAGCTTTCTTTCCAGATG 1345
|||| |||||| | ||||| ||||| ||||||||| ||||||||||||| |||||||||
Sbjct 1084 -TTGAAAAGCTTAGCTATAAAGATGATGAGGGTGCAGCCACAGAGCTTTCGTTCCAGATG 1142
Query 1346 TGGACCGACCAGATGCAGGACACATTGGTCTTCAAGAAAAAGGGGGAT-TCTGCATTCCG 1404
|||||| | |||||||||||| | || ||||||||||||||| ||| | ||| |||||
Sbjct 1143 TGGACCAATCAGATGCAGGACTCGCTGAACTTCAAGAAAAAGGGTGATGT-TGCTTTCCG 1201
Query 1405 ACATAAAGACTTTGCAAAGGCCATCGAATGCTATTCTCAGTTCATCGAGGTAGGTACAAT 1464
||||||||| |||||||| ||||| || ||||||||||||||||| |||| || |||||
Sbjct 1202 ACATAAAGAATTTGCAAATGCCATTGACTGCTATTCTCAGTTCATTGAGGGCGGGACAAT 1261
Query 1465 GGGTTCCCCAACTGTTCATGCAAGACAGA-GTCTGTGTTACCTAATGAATGATATGCCT- 1522
|| |||||| |||||| |||||||| ||| ||||||||||||| |||||||| |||||
Sbjct 1262 GGTTTCCCCTACTGTTTATGCAAGA-AGAAGTCTGTGTTACCTGATGAATGAGATGCCCC 1320
Query 1523 AGAGAAGCACTAAACAATGCAATGCAAGCACAAGTCATATCTCCTGCTTGGCATATCGCA 1582
| ||| || || || ||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1321 A-AGAGGCGCTGAATGATGCAATGCAAGCCCAAGTTATATCTCCTGCTTGGCATATCGCA 1379
Query 1583 TCGTATCTCCAAGCTGTAGCTTTGTCAGCTCTAGGACAAGAGAACGAAGCACACACTGCT 1642
|| ||||| |||||||||||| | ||||| ||||| |||||||||||||||||| |||||
Sbjct 1380 TCCTATCTTCAAGCTGTAGCTCTATCAGCCCTAGGCCAAGAGAACGAAGCACACGCTGCT 1439
Query 1643 CTAAAAGACGG-TGCAATGCTTGAAAGCAAAAGAAA 1677
|| |||||||| | ||||||| ||||||||||||||
Sbjct 1440 CTTAAAGACGGAT-CAATGCTCGAAAGCAAAAGAAA 1474
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82503470670
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5