BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41270.1
Length=931
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947595 jgi|Araly1|947595|scaffold_703824.1 966 0.0
> Ahg947595 jgi|Araly1|947595|scaffold_703824.1
Length=752
Score = 966 bits (523), Expect = 0.0
Identities = 659/721 (91%), Gaps = 24/721 (3%)
Strand=Plus/Plus
Query 88 GATGGGCAAACGAGGACCGAAGAAGCTTACAAACACTCAAGGAGGAGGAGGACCTAATCT 147
|||||| |||||||| || ||||||||||||||||||| | |||||||||||||||
Sbjct 20 GATGGGGAAACGAGGGCCTAAGAAGCTTACAAACACTC----A--AGGAGGACCTAATCT 73
Query 148 CAAATCTGTACTGAGACATGAGCACTTGAAGAATCTCGCTCTCTGGTCTTCCACCGGAGA 207
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 74 CAAATCTGTACTAAGACATGAGCACTTGAAGAATCTCGCTCTATGGTCTTCCACCGGAGA 133
Query 208 TACTCCTATCCCGTCTCTTGCTTCATTACTCGGTCGACGTCTCGCTGCCGACACTGAATC 267
|||||| || |||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 134 TACTCCGATACCGTCTCTTGCTTCATTATTCGGTCGACGTCTCGCTGCCGACACTGAAAC 193
Query 268 CACCGGAATCACTACTGATCCCGATCTCGTCTCTTGTCAAAGGTGTGAGACCATTCTTAA 327
||| |||||| ||||||||||||||| |||||||||||| ||||||||||| ||||||||
Sbjct 194 CACGGGAATCGCTACTGATCCCGATCACGTCTCTTGTCAGAGGTGTGAGACTATTCTTAA 253
Query 328 GCCTGGATTCAATTGCAATGTTAGAATAGAGAAGGTTTCTGCTAATGTGAAGAAGAAACG 387
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 254 GCCTGGATTCAATTGCAATGTTAGAATTGAGAAGGTTTCTGCTAAT---AAGAAGAAACG 310
Query 388 TAATAGGTGCAAGAAGTCTAACAACATCTGTTTCCCTCAGAACAATGTAGTTTACCATTG 447
||| ||||||||||| ||||||| ||||||| ||||||||||||||||||||| ||||
Sbjct 311 TAACAGGTGCAAGAATTCTAACA---TCTGTTTGCCTCAGAACAATGTAGTTTACAATTG 367
Query 448 CAATTTCTGTTCTCACCGGAACCTT-AAGAGAGGTACTGCTAAAGGTCAGATGAAAGAGC 506
|||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct 368 CAATTTCTGTTCTCACCGGAAC-TTGAAGAGAGGTACTGCCAAAGGTCAGATGAAAGAGA 426
Query 507 TTTACCCGTTCAAGCCGAAAACCGCTCGTTCGTCGCGTCCGAAGATCAAGAAAGAGATGA 566
||||||||||||||||||| || |||||||| | |||||| |||||||||||||||||||
Sbjct 427 TTTACCCGTTCAAGCCGAAGACTGCTCGTTCTTTGCGTCCTAAGATCAAGAAAGAGATGA 486
Query 567 CGATGCCTCAAGAAATCCAAAGTAACATGCTTTCTTCACCGGAGAGAAGTGTGAAAGATC 626
|| ||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||
Sbjct 487 CGGTGCCTCAAGAAATCCAAAGTAGCATGCTTTGTTCGCCGGAGAGAAGTGTGAAAGATC 546
Query 627 AGGTGGAGGAGAAGAGTGTTGGGGATACACCGAAGCCGATGATGCTTACATTGGAGAGGG 686
||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 547 AGGTGGAGGAGAATAGTGTTGGGGATACACCGAAGCCAATGATGCTTACTTTGGAGAGGG 606
Query 687 ATAGGAGAATACGAAAACCCAAAAGTAAGAAACCGAGT-GAACCTC--AA--AGTGTTCC 741
||||||||||||| ||| |||||||||||||||||| | || || | || || |||||
Sbjct 607 ATAGGAGAATACGGAAATCCAAAAGTAAGAAACCGA-TCGATCC-CGGAAGCAGCGTTCC 664
Query 742 TGAGAAAACAGTTGGTGGATCAAATAAGAGGAAGAGAAAATCACCTTGGACAAGTATGAA 801
||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 665 TGAGAAAACTGTTGGTGGATCAAATAAGAGGAAGAGAAAATCA--T-GGACAAGTATGAA 721
Query 802 G 802
|
Sbjct 722 G 722
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34539362802
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5