BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41290.1
Length=864
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493850 jgi|Araly1|493850|fgenesh2_kg.7__3283__AT5G41280.1 1212 0.0
Ahg493849 jgi|Araly1|493849|fgenesh2_kg.7__3282__AT5G41300.1 302 4e-81
> Ahg493850 jgi|Araly1|493850|fgenesh2_kg.7__3283__AT5G41280.1
Length=907
Score = 1212 bits (656), Expect = 0.0
Identities = 796/862 (92%), Gaps = 16/862 (2%)
Strand=Plus/Plus
Query 1 ATGGAAACAACAAAGAAACTCTTTGCTCTTCTCTGTCTC-TTCGTCACCATGAACCAAGC 59
|||||| |||||||||||||||||| ||| ||||| ||| ||| ||||||| ||||||||
Sbjct 1 ATGGAAGCAACAAAGAAACTCTTTGTTCTCCTCTGCCTCTTTC-TCACCATTAACCAAGC 59
Query 60 TATCTCCGTATCCGATCCCGACGACATGGAAACTTTCTGC-ATGAAATCATCCAGAAACA 118
|||||| | |||||| | | ||||| ||||||||| | | |||||||| |||||
Sbjct 60 TATCTCTGAATCCGA----G-C-CCATGGCGACTTTCTGCAACG-AATCATCCGGAAACT 112
Query 119 CCACTAGCAACACAACTTACAACAAAAATCTCAACACTCTTCTCTCCACTCTTAGCAACC 178
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 113 TCACTAGCAACACAACTTACAACAAAAATCTCAACACTCTTCTCTCTACTCTTAGCAACC 172
Query 179 AATCATCATTCGCTAACTACTACAATCTCACGACCGGTCTAGCTTCAGACACCGTCCATG 238
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 173 AATCATCATTCGCTAACTACTATAATCTCACGACCGGTCTAGCTTCAGACACAGTCCATG 232
Query 239 GAATGTTCTTATGCACAGGAGACGTCAACAGAACAACGTGCAACGCCTGCGTCAAGAACG 298
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 233 GAATGTTCTTATGCACAGGAGACGTCAACAGAACAACATGCAACGCCTGCGTCAAGAAGG 292
Query 299 CAACAATCGAGATTGCCAAAAACTGTACTAACCATCGAGAAGCAATCATTTACAACGTAG 358
|||||||||||||| |||||||||| ||||||||||||||||||||||||||| || | |
Sbjct 293 CAACAATCGAGATTACCAAAAACTGCACTAACCATCGAGAAGCAATCATTTACTACTTTG 352
Query 359 ATTGTATGGTTCGATACTCAGATAAGTTCTTCCTCACGACCCTAGAGACCAATCCTAGCT 418
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 353 ATTGTATGGTTCGATACTCAGATAAGTTCTTCCTCACGACCCTAGAGACCAAGCCTAGC- 411
Query 419 A-TTGGTGGTCATCTAACGATTTAATACCCAAATCATTTGGTAAATTTGGACAGAGACTG 477
| ||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 412 ATTTGGTGGTCATCTCACGATTTAGTACCCAAATCATATGGTAAATTTGGACAGAGACTG 471
Query 478 TCTGACAAAATGGGAGAAGTTATCGTTAGATCATCTTTGTTGTCTTCATCGTTTACGCCA 537
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 472 TCTGAGAAAATGGGAGAAGTTATCGTTAGATCATCTTTGTTGTCTTCATCGTTTTCGCCA 531
Query 538 TATTATCTTATGGATACAACTAGATTCGATAACTTGTATGATCTTGAGTCTATTGTTCAG 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 TATTATCTTATGGATACAACTAGATTCGATAACTTGTATGATCTTGAGTCTATTGTTCAG 591
Query 598 TGTACTCCTGATTTGGATCCAAGAAACTGCACCACATGTCTGAAACTTGCATTGCAAGAA 657
|||| |||| |||||||||||| ||||||||||||||| ||||||||||| |||||||||
Sbjct 592 TGTAGTCCTCATTTGGATCCAACAAACTGCACCACATGCCTGAAACTTGCGTTGCAAGAA 651
Query 658 CTCACTGAATGCTGTGGTAATCAGGTTTGGGCTTTCATCTACACTCCCAACTGTATGGTG 717
|||||||| ||||||||| ||||||||||||||||||||| ||||||||| ||| | |||
Sbjct 652 CTCACTGACTGCTGTGGTGATCAGGTTTGGGCTTTCATCTTCACTCCCAAATGTTTAGTG 711
Query 718 AGTTTTGATACATACAA-TTCATCCTTGCCGCCGCTTCCACCGCCAAGTCGCAGCGGTTC 776
||||||||||| | ||| |||||| ||||| |||||||||||||||||||||||||||||
Sbjct 712 AGTTTTGATACCT-CAACTTCATCATTGCCACCGCTTCCACCGCCAAGTCGCAGCGGTTC 770
Query 777 CTTCTCCCAT-AGAGGAAACAACAAATTACTTGGGGGAATGGTTCTTGCTGTGTCCGTTT 835
||||||| || |||||||| |||||| ||||||||||||||| |||||||||| ||||||
Sbjct 771 CTTCTCC-ATTAGAGGAAATAACAAAATACTTGGGGGAATGGCTCTTGCTGTGGCCGTTT 829
Query 836 CGGTGTTTGCATTTTTGAGTTT 857
|||||||||||||||| ||||
Sbjct 830 GGGTGTTTGCATTTTTGGGTTT 851
> Ahg493849 jgi|Araly1|493849|fgenesh2_kg.7__3282__AT5G41300.1
Length=804
Score = 302 bits (163), Expect = 4e-81
Identities = 227/257 (88%), Gaps = 8/257 (3%)
Strand=Plus/Plus
Query 70 TCCG-ATCCCGACGACATGGAAACTTTCTGCATGAAATCATCCAGAAACACCACT-AGCA 127
|||| || ||||| ||||||| ||||||||||| |||||||||||||||| |||| | ||
Sbjct 82 TCCGAAT-CCGACCACATGGACACTTTCTGCATCAAATCATCCAGAAACATCACTCA-CA 139
Query 128 ACACAACTTACAACAAAAATCTCAACACTC-TTCTCTCCACTCTTAGCAACCAATCAT-C 185
||||||||||||||| ||| |||||||| | | ||||| ||| || ||||| |||||| |
Sbjct 140 ACACAACTTACAACACAAACCTCAACAC-CATGCTCTCTACTTTTCGCAACAAATCATCC 198
Query 186 ATTCGCTAACTACTACAATCTCACGACCGGTCTAGCTTCAGACACCGTCCATGGAATGTT 245
| ||| |||||| ||||||||||| || ||||||||||| ||||| ||| ||||||||||
Sbjct 199 A-TCGTTAACTATTACAATCTCACAACTGGTCTAGCTTCCGACACAGTCTATGGAATGTT 257
Query 246 CTTATGCACAGGAGACGTCAACAGAACAACGTGCAACGCCTGCGTCAAGAACGCAACAAT 305
|||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 258 TTTATGCACAGGAGACGTCAACATAACAACTTGCAACGCCTGCGTCAAGAACGCAACAAT 317
Query 306 CGAGATTGCCAAAAACT 322
|||||||| ||||||||
Sbjct 318 CGAGATTGTCAAAAACT 334
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31985127363
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5