BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41300.1
Length=864
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493849 jgi|Araly1|493849|fgenesh2_kg.7__3282__AT5G41300.1 676 0.0
Ahg493850 jgi|Araly1|493850|fgenesh2_kg.7__3283__AT5G41280.1 597 4e-170
> Ahg493849 jgi|Araly1|493849|fgenesh2_kg.7__3282__AT5G41300.1
Length=804
Score = 676 bits (366), Expect = 0.0
Identities = 441/476 (93%), Gaps = 9/476 (2%)
Strand=Plus/Plus
Query 392 ATAAGTTCTTCCTCTCCACCTTT-GAGAAAAAGCCTAATAGCATTTGGAGCGGTGATGAT 450
||||||||||||| || | |||| |||| |||||| ||||||||||||||| ||||||
Sbjct 335 ATAAGTTCTTCCTATCGA-CTTTAGAGACCAAGCCTTATAGCATTTGGAGCGCCGATGAT 393
Query 451 CCAATACCGAAATCACTAGGTCCGTTCAAAAAGAGATTGTAT-AAGAAAATGGGAGAGGC 509
|||||||||||| |||||||||| |||| ||||||||||| | ||||||||||||||||
Sbjct 394 CCAATACCGAAAACACTAGGTCCATTCAGAAAGAGATTGT-TGAAGAAAATGGGAGAGGT 452
Query 510 TATCGTAAGATCGTCTACGTTGTCTTCCGCTCTCACGCCGTATTATTACTTGGATGTAAC 569
|||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 453 TATCGTAAGATCATCTATGTTGTCTTCAGCTCTCACGCCGTATTATTACTTGGATGTGAC 512
Query 570 TAGATTTGATGGCTCCTACGATCTTGACTCTCTTGTTCAGTGTAGTCCACATTTGAATCC 629
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 513 TCGATTTGATGGCTCCTACGATCTCGACTCTCTTGTTCAGTGTAGTCCACATTTGAATCC 572
Query 630 TGAAAACTGTACCATATGCCTTGAATATGCGTTGCAAGAAATTATCGACTGTTGTAGTGA 689
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 573 TGAAAACTGTACCATATGTCTGGAATATGCGTTGCAAGAAATTATCGACTGTTGTAGTGA 632
Query 690 CAAGTTTTGGGCTATGATCTTCACTCCTAACTGTTTTGTGAATTAT-ATGATCACAACTT 748
||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 633 CAAATTTTGGGCTATGATCTTCACTCCTAACTGTTTTGTGAATTATTAT-ATCACAACTC 691
Query 749 CACCATTGCCGCCGCTTCCATCACCGTATCACCATAGCGGTTCGTGCTCCATTAGAGGAA 808
||||| ||||||||||||||||||||||||||||||||||||| | |||||| |||||||
Sbjct 692 CACCACTGCCGCCGCTTCCATCACCGTATCACCATAGCGGTTCTTTCTCCATCAGAGGAA 751
Query 809 ATAGTGAAATATTTTGGGGAATGATCATTCTGGCAGCTTTGGTGTTTACATTTTAG 864
||| |||||||||||||||||||| | | |||||||||||||||||||||||||||
Sbjct 752 ATAATGAAATATTTTGGGGAATGA-C-T-CTGGCAGCTTTGGTGTTTACATTTTAG 804
Score = 440 bits (238), Expect = 7e-123
Identities = 304/336 (90%), Gaps = 4/336 (1%)
Strand=Plus/Plus
Query 1 ATGGAAACAACCAAGAAActctctcctatcttctgcttctcttctctcttatgtctcttc 60
||||||||||| |||||||||||| || |||| |||||| |||||||||| ||||||| |
Sbjct 1 ATGGAAACAACAAAGAAACTCTCTGCTCTCTTTTGCTTCGCTTCTCTCTTCTGTCTCTAC 60
Query 61 ttcACC-ATGAACCAAG-CTGTCTCCGAAACAGACCACATGGACACTTTCTGCATTGATT 118
|||||| || |||| || | | |||||| | ||||||||||||||||||||||| | |
Sbjct 61 TTCACCAAT-AACC-AGACCATGTCCGAATCCGACCACATGGACACTTTCTGCATCAAAT 118
Query 119 CATCCAGAAACACCACTGGCAACACAACTTACAACAAAAATCTCAACACCATGCTCTCTA 178
|||||||||||| |||| ||||||||||||||||| ||| |||||||||||||||||||
Sbjct 119 CATCCAGAAACATCACTCACAACACAACTTACAACACAAACCTCAACACCATGCTCTCTA 178
Query 179 CTTTTCGCAACCAATCATCCATCGTTAACAATTACAATCTCACAACTGGTCTAGCTTCAG 238
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 179 CTTTTCGCAACAAATCATCCATCGTTAACTATTACAATCTCACAACTGGTCTAGCTTCCG 238
Query 239 ACACAGTCTATGGAATGTTCTTATGCACAGGAGACGTCAACATAACAACGTGCAACAACT 298
||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||
Sbjct 239 ACACAGTCTATGGAATGTTTTTATGCACAGGAGACGTCAACATAACAACTTGCAACGCCT 298
Query 299 GCGTCAAGAATGCAACAATCGAGATTGTCAAAAACT 334
|||||||||| |||||||||||||||||||||||||
Sbjct 299 GCGTCAAGAACGCAACAATCGAGATTGTCAAAAACT 334
> Ahg493850 jgi|Araly1|493850|fgenesh2_kg.7__3283__AT5G41280.1
Length=907
Score = 597 bits (323), Expect = 4e-170
Identities = 679/844 (80%), Gaps = 52/844 (6%)
Strand=Plus/Plus
Query 45 tctcttatgtctc-ttcttcACCATGAACCAAGCTGTCTCCGAAACAGA-CCACATGGAC 102
|||| | || ||| ||| ||||||| ||||||||| |||| ||| | || || ||||| |
Sbjct 27 TCTCCTCTGCCTCTTTC-TCACCATTAACCAAGCTATCTCTGAATCCGAGCC-CATGG-C 83
Query 103 -ACTTTCTGCATTGATTCATCCAGAAACACCACTGGCAACACAACTTACAACAAAAATCT 161
|||||||||| || |||||| ||||| |||| |||||||||||||||||||||||||
Sbjct 84 GACTTTCTGCAACGAATCATCCGGAAACTTCACTAGCAACACAACTTACAACAAAAATCT 143
Query 162 CAACAC-CATGCTCTCTACTTTTCGCAACCAATCATCCA-TCGTTAACAATTACAATCTC 219
|||||| | | ||||||||| || |||||||||||| || ||| |||| | || ||||||
Sbjct 144 CAACACTC-TTCTCTCTACTCTTAGCAACCAATCAT-CATTCGCTAACTACTATAATCTC 201
Query 220 ACAACTGGTCTAGCTTCAGACACAGTCTATGGAATGTTCTTATGCACAGGAGACGTCAAC 279
|| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 202 ACGACCGGTCTAGCTTCAGACACAGTCCATGGAATGTTCTTATGCACAGGAGACGTCAAC 261
Query 280 ATAACAACGTGCAACAACTGCGTCAAGAATGCAACAATCGAGATTGTCAAAAACTGTACT 339
| |||||| |||||| |||||||||||| ||||||||||||||| ||||||||| |||
Sbjct 262 AGAACAACATGCAACGCCTGCGTCAAGAAGGCAACAATCGAGATTACCAAAAACTGCACT 321
Query 340 AACCATCGAGAAGCAATCATTTACTACATCGATTGTATGGTTCGTTACTCAGATAAGTTC 399
||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||
Sbjct 322 AACCATCGAGAAGCAATCATTTACTACTTTGATTGTATGGTTCGATACTCAGATAAGTTC 381
Query 400 TTCCTCTCCACCTTTGAGAAAAAGCCTAATAGCATTTGGAG--CGG-TGATGATCCAATA 456
|||||| | ||| | |||| ||||||| |||||||| | | | | ||| | ||
Sbjct 382 TTCCTCACGACCCTAGAGACCAAGCCTA---GCATTTGGTGGTCATCTCACGATTTAGTA 438
Query 457 CCGAAATCACTA-GGTCCGTTCAAAAAGAGATTGTATAAGAAAATGGGAGAGGCTATCGT 515
|| |||||| || ||| || | ||||| ||| | ||||||||||||| | ||||||
Sbjct 439 CCCAAATCA-TATGGTAAATTTGGACAGAGACTGTCTGAGAAAATGGGAGAAGTTATCGT 497
Query 516 AAGATCGTCTACGTTGTCTTC--CGCTCTCACGCCGTATTAT-T-ACTTGGATGTAACTA 571
||||| ||| ||||||||| || | || ||| |||||| | | | |||| |||||
Sbjct 498 TAGATCATCTTTGTTGTCTTCATCGTTTTC--GCCATATTATCTTA-T-GGATACAACTA 553
Query 572 GATTTGATGGCTCCTACGATCTTGACTCTCTTGTTCAGTGTAGTCCACATTTGAATCCTG 631
|||| ||| || || |||||||| ||| |||||||||||||||| |||||| ||||
Sbjct 554 GATTCGATAACTTGTATGATCTTGAGTCTATTGTTCAGTGTAGTCCTCATTTGGATCCA- 612
Query 632 A-AAACTGTACCATATGCCTTGAATA-T-GCGTTGCAAGAAATTA-TCGACTGTTGTAGT 687
| |||||| |||| |||||| ||| | | |||||||||||| | | | ||||| ||| ||
Sbjct 613 ACAAACTGCACCACATGCCT-GAA-ACTTGCGTTGCAAGAACTCACT-GACTGCTGTGGT 669
Query 688 GA-CAAGTTTTGGGCTATGATCTTCACTCCTAACTGTTTTGTGAATTATATGAT-CA-CA 744
|| || |||| ||||| | ||||||||||| || ||||| |||| || | |||| | ||
Sbjct 670 GATCAGGTTT-GGGCTTTCATCTTCACTCCCAAATGTTTAGTGAGTT-T-TGATACCTCA 726
Query 745 ACTTCACCATTGCCGCCGCTTCCATCACCGTA-TCACCATAGCGGTTCGTGCTCCATTAG 803
|||||| ||||||| ||||||||| | || | || | | ||||||| | |||||||||
Sbjct 727 ACTTCATCATTGCCACCGCTTCCACCGCCA-AGTCGC-A--GCGGTTCCTTCTCCATTAG 782
Query 804 AGGAAATAGTGAAATATTTTGGGGAATGA-TCATT-CTG-G-CAGCTTTGG-TGTTTACA 858
|||||||| ||||| || |||||||| || || ||| | | | ||||| ||||| ||
Sbjct 783 AGGAAATAACAAAATACTTGGGGGAATGGCTC-TTGCTGTGGCCG-TTTGGGTGTTTGCA 840
Query 859 TTTT 862
||||
Sbjct 841 TTTT 844
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31985127363
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5