BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G41300.1 Length=864 Score E Sequences producing significant alignments: (Bits) Value Ahg493849 jgi|Araly1|493849|fgenesh2_kg.7__3282__AT5G41300.1 676 0.0 Ahg493850 jgi|Araly1|493850|fgenesh2_kg.7__3283__AT5G41280.1 597 4e-170 > Ahg493849 jgi|Araly1|493849|fgenesh2_kg.7__3282__AT5G41300.1 Length=804 Score = 676 bits (366), Expect = 0.0 Identities = 441/476 (93%), Gaps = 9/476 (2%) Strand=Plus/Plus Query 392 ATAAGTTCTTCCTCTCCACCTTT-GAGAAAAAGCCTAATAGCATTTGGAGCGGTGATGAT 450 ||||||||||||| || | |||| |||| |||||| ||||||||||||||| |||||| Sbjct 335 ATAAGTTCTTCCTATCGA-CTTTAGAGACCAAGCCTTATAGCATTTGGAGCGCCGATGAT 393 Query 451 CCAATACCGAAATCACTAGGTCCGTTCAAAAAGAGATTGTAT-AAGAAAATGGGAGAGGC 509 |||||||||||| |||||||||| |||| ||||||||||| | |||||||||||||||| Sbjct 394 CCAATACCGAAAACACTAGGTCCATTCAGAAAGAGATTGT-TGAAGAAAATGGGAGAGGT 452 Query 510 TATCGTAAGATCGTCTACGTTGTCTTCCGCTCTCACGCCGTATTATTACTTGGATGTAAC 569 |||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||| || Sbjct 453 TATCGTAAGATCATCTATGTTGTCTTCAGCTCTCACGCCGTATTATTACTTGGATGTGAC 512 Query 570 TAGATTTGATGGCTCCTACGATCTTGACTCTCTTGTTCAGTGTAGTCCACATTTGAATCC 629 | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 513 TCGATTTGATGGCTCCTACGATCTCGACTCTCTTGTTCAGTGTAGTCCACATTTGAATCC 572 Query 630 TGAAAACTGTACCATATGCCTTGAATATGCGTTGCAAGAAATTATCGACTGTTGTAGTGA 689 |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 573 TGAAAACTGTACCATATGTCTGGAATATGCGTTGCAAGAAATTATCGACTGTTGTAGTGA 632 Query 690 CAAGTTTTGGGCTATGATCTTCACTCCTAACTGTTTTGTGAATTAT-ATGATCACAACTT 748 ||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 633 CAAATTTTGGGCTATGATCTTCACTCCTAACTGTTTTGTGAATTATTAT-ATCACAACTC 691 Query 749 CACCATTGCCGCCGCTTCCATCACCGTATCACCATAGCGGTTCGTGCTCCATTAGAGGAA 808 ||||| ||||||||||||||||||||||||||||||||||||| | |||||| ||||||| Sbjct 692 CACCACTGCCGCCGCTTCCATCACCGTATCACCATAGCGGTTCTTTCTCCATCAGAGGAA 751 Query 809 ATAGTGAAATATTTTGGGGAATGATCATTCTGGCAGCTTTGGTGTTTACATTTTAG 864 ||| |||||||||||||||||||| | | ||||||||||||||||||||||||||| Sbjct 752 ATAATGAAATATTTTGGGGAATGA-C-T-CTGGCAGCTTTGGTGTTTACATTTTAG 804 Score = 440 bits (238), Expect = 7e-123 Identities = 304/336 (90%), Gaps = 4/336 (1%) Strand=Plus/Plus Query 1 ATGGAAACAACCAAGAAActctctcctatcttctgcttctcttctctcttatgtctcttc 60 ||||||||||| |||||||||||| || |||| |||||| |||||||||| ||||||| | Sbjct 1 ATGGAAACAACAAAGAAACTCTCTGCTCTCTTTTGCTTCGCTTCTCTCTTCTGTCTCTAC 60 Query 61 ttcACC-ATGAACCAAG-CTGTCTCCGAAACAGACCACATGGACACTTTCTGCATTGATT 118 |||||| || |||| || | | |||||| | ||||||||||||||||||||||| | | Sbjct 61 TTCACCAAT-AACC-AGACCATGTCCGAATCCGACCACATGGACACTTTCTGCATCAAAT 118 Query 119 CATCCAGAAACACCACTGGCAACACAACTTACAACAAAAATCTCAACACCATGCTCTCTA 178 |||||||||||| |||| ||||||||||||||||| ||| ||||||||||||||||||| Sbjct 119 CATCCAGAAACATCACTCACAACACAACTTACAACACAAACCTCAACACCATGCTCTCTA 178 Query 179 CTTTTCGCAACCAATCATCCATCGTTAACAATTACAATCTCACAACTGGTCTAGCTTCAG 238 ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| | Sbjct 179 CTTTTCGCAACAAATCATCCATCGTTAACTATTACAATCTCACAACTGGTCTAGCTTCCG 238 Query 239 ACACAGTCTATGGAATGTTCTTATGCACAGGAGACGTCAACATAACAACGTGCAACAACT 298 ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| || Sbjct 239 ACACAGTCTATGGAATGTTTTTATGCACAGGAGACGTCAACATAACAACTTGCAACGCCT 298 Query 299 GCGTCAAGAATGCAACAATCGAGATTGTCAAAAACT 334 |||||||||| ||||||||||||||||||||||||| Sbjct 299 GCGTCAAGAACGCAACAATCGAGATTGTCAAAAACT 334 > Ahg493850 jgi|Araly1|493850|fgenesh2_kg.7__3283__AT5G41280.1 Length=907 Score = 597 bits (323), Expect = 4e-170 Identities = 679/844 (80%), Gaps = 52/844 (6%) Strand=Plus/Plus Query 45 tctcttatgtctc-ttcttcACCATGAACCAAGCTGTCTCCGAAACAGA-CCACATGGAC 102 |||| | || ||| ||| ||||||| ||||||||| |||| ||| | || || ||||| | Sbjct 27 TCTCCTCTGCCTCTTTC-TCACCATTAACCAAGCTATCTCTGAATCCGAGCC-CATGG-C 83 Query 103 -ACTTTCTGCATTGATTCATCCAGAAACACCACTGGCAACACAACTTACAACAAAAATCT 161 |||||||||| || |||||| ||||| |||| ||||||||||||||||||||||||| Sbjct 84 GACTTTCTGCAACGAATCATCCGGAAACTTCACTAGCAACACAACTTACAACAAAAATCT 143 Query 162 CAACAC-CATGCTCTCTACTTTTCGCAACCAATCATCCA-TCGTTAACAATTACAATCTC 219 |||||| | | ||||||||| || |||||||||||| || ||| |||| | || |||||| Sbjct 144 CAACACTC-TTCTCTCTACTCTTAGCAACCAATCAT-CATTCGCTAACTACTATAATCTC 201 Query 220 ACAACTGGTCTAGCTTCAGACACAGTCTATGGAATGTTCTTATGCACAGGAGACGTCAAC 279 || || ||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 202 ACGACCGGTCTAGCTTCAGACACAGTCCATGGAATGTTCTTATGCACAGGAGACGTCAAC 261 Query 280 ATAACAACGTGCAACAACTGCGTCAAGAATGCAACAATCGAGATTGTCAAAAACTGTACT 339 | |||||| |||||| |||||||||||| ||||||||||||||| ||||||||| ||| Sbjct 262 AGAACAACATGCAACGCCTGCGTCAAGAAGGCAACAATCGAGATTACCAAAAACTGCACT 321 Query 340 AACCATCGAGAAGCAATCATTTACTACATCGATTGTATGGTTCGTTACTCAGATAAGTTC 399 ||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||| Sbjct 322 AACCATCGAGAAGCAATCATTTACTACTTTGATTGTATGGTTCGATACTCAGATAAGTTC 381 Query 400 TTCCTCTCCACCTTTGAGAAAAAGCCTAATAGCATTTGGAG--CGG-TGATGATCCAATA 456 |||||| | ||| | |||| ||||||| |||||||| | | | | ||| | || Sbjct 382 TTCCTCACGACCCTAGAGACCAAGCCTA---GCATTTGGTGGTCATCTCACGATTTAGTA 438 Query 457 CCGAAATCACTA-GGTCCGTTCAAAAAGAGATTGTATAAGAAAATGGGAGAGGCTATCGT 515 || |||||| || ||| || | ||||| ||| | ||||||||||||| | |||||| Sbjct 439 CCCAAATCA-TATGGTAAATTTGGACAGAGACTGTCTGAGAAAATGGGAGAAGTTATCGT 497 Query 516 AAGATCGTCTACGTTGTCTTC--CGCTCTCACGCCGTATTAT-T-ACTTGGATGTAACTA 571 ||||| ||| ||||||||| || | || ||| |||||| | | | |||| ||||| Sbjct 498 TAGATCATCTTTGTTGTCTTCATCGTTTTC--GCCATATTATCTTA-T-GGATACAACTA 553 Query 572 GATTTGATGGCTCCTACGATCTTGACTCTCTTGTTCAGTGTAGTCCACATTTGAATCCTG 631 |||| ||| || || |||||||| ||| |||||||||||||||| |||||| |||| Sbjct 554 GATTCGATAACTTGTATGATCTTGAGTCTATTGTTCAGTGTAGTCCTCATTTGGATCCA- 612 Query 632 A-AAACTGTACCATATGCCTTGAATA-T-GCGTTGCAAGAAATTA-TCGACTGTTGTAGT 687 | |||||| |||| |||||| ||| | | |||||||||||| | | | ||||| ||| || Sbjct 613 ACAAACTGCACCACATGCCT-GAA-ACTTGCGTTGCAAGAACTCACT-GACTGCTGTGGT 669 Query 688 GA-CAAGTTTTGGGCTATGATCTTCACTCCTAACTGTTTTGTGAATTATATGAT-CA-CA 744 || || |||| ||||| | ||||||||||| || ||||| |||| || | |||| | || Sbjct 670 GATCAGGTTT-GGGCTTTCATCTTCACTCCCAAATGTTTAGTGAGTT-T-TGATACCTCA 726 Query 745 ACTTCACCATTGCCGCCGCTTCCATCACCGTA-TCACCATAGCGGTTCGTGCTCCATTAG 803 |||||| ||||||| ||||||||| | || | || | | ||||||| | ||||||||| Sbjct 727 ACTTCATCATTGCCACCGCTTCCACCGCCA-AGTCGC-A--GCGGTTCCTTCTCCATTAG 782 Query 804 AGGAAATAGTGAAATATTTTGGGGAATGA-TCATT-CTG-G-CAGCTTTGG-TGTTTACA 858 |||||||| ||||| || |||||||| || || ||| | | | ||||| ||||| || Sbjct 783 AGGAAATAACAAAATACTTGGGGGAATGGCTC-TTGCTGTGGCCG-TTTGGGTGTTTGCA 840 Query 859 TTTT 862 |||| Sbjct 841 TTTT 844 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31985127363 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5