BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41310.1
Length=2886
Score E
Sequences producing significant alignments: (Bits) Value
Ahg330390 jgi|Araly1|330390|fgenesh1_pm.C_scaffold_7002617 3432 0.0
Ahg474991 jgi|Araly1|474991|fgenesh2_kg.2__121__AT1G63640.1 568 1e-160
> Ahg330390 jgi|Araly1|330390|fgenesh1_pm.C_scaffold_7002617
Length=2982
Score = 3432 bits (1858), Expect = 0.0
Identities = 2080/2185 (95%), Gaps = 23/2185 (1%)
Strand=Plus/Plus
Query 532 TTACAAAATACTTCTACACGATCGTTGTTTGACATGCTGGATAGGCTTCTTGATGAGAGC 591
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 544 TTACAAAATACTTCTACACGATCGTTATTTGACATGCTCGATAGGCTTCTTGATGAGAGC 603
Query 592 TCGCAGAAGATGAATGTGTCTCATGTTTATGTATCTATCTTGAGAGGCATTGTGCAAGTT 651
| ||||||||||||||||| ||||||| |||||||||||| |||||||||| |||||||
Sbjct 604 CCACAGAAGATGAATGTGTCCCATGTTTTTGTATCTATCTTAAGAGGCATTGCGCAAGTT 663
Query 652 GTTGAGCAACGGATCTCAAATCAAGCTGAGAACCTAAAAAACCAAAATATACTCTTTAGG 711
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 GTGGAGCAACGGATCTCAAATCAAGCTGAGAACCTAAAAAACCAAAATATACTCTTTAGG 723
Query 712 GTTCGTGAAGAAAAATATAGATCAAGAATAAATGTTTTAGAAACTTTGGCATCTGGAACA 771
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 724 GTTCGTGAAGAAAAATATAGATCAAGAATAAATGTATTAGAAACTTTGGCATCTGGAACA 783
Query 772 ACAGATGAGAAT--G---AGGTCAGAAGAAAAAGATGTGCTCCAAATAGAAAAGG-AAAA 825
|||||||||||| | |||||| ||||||||||||| |||||||||||||||| ||||
Sbjct 784 ACAGATGAGAATGAGCTAAGGTCAAAAGAAAAAGATGTCCTCCAAATAGAAAAGGAAAAA 843
Query 826 GAGCGTAGTAATGCTGAACTTTCTAAGTTGAAGCAAGAACTTGAAATTGTGAAAGAGACA 885
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 GAGCGTAGTGATGCTGAACTTTCTAAGTTGAAGCAAGAACTTGAAATTGTGAAAGAGACA 903
Query 886 CATGAAAAACAGTTTTTGGAACTA-AAACTAAATGCTCAAAAAGCTAAAGTTGAGTTGGA 944
|||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||
Sbjct 904 CATGAAAAACAGTTTTTGGAACTAGAATC-AAATGCTCAAAAAGCTAAAGTTGAGTTGGA 962
Query 945 GAGGCAAGTAAA-GAATTCAGAGTTACGTGTAGTAGAAGCAAAAGAACTCGAGAAGTTAT 1003
|| |||| |||| ||| |||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 963 GAAGCAATTAAAGGAA-TCAGAGTTACGTGTGGTAGAAGCAAAAGAACTTGAGAAGTTAT 1021
Query 1004 GTGAAACTAAAACTAAAAGATGGGAGAAGAAAGAACAAACATATAAGAGGTTTATAAACC 1063
||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1022 GTGAAACAAAAACTAAAAGATGGGAGAAGAAAGAGCAAACATATAAGAGCTTTATAAACC 1081
Query 1064 ACCAGACAGAGGCTTTGCAGGAGTTGAAAGCTACTTCTATGTCTTTAAAACATGATGTAT 1123
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1082 ACCAGACAGAGGCTTTGCAGGAGTTGAAAGCTACTTCTATGTCTTTAAAACATGAAGTCC 1141
Query 1124 TAAAGATAGGAGAGAACTACTTCCTGGATCTAACTTACTATGGTATAAAGCTCAGAGGAG 1183
|||||| |||||||||||||||| |||||||| |||||||||||||| |||||||||||
Sbjct 1142 TAAAGACAGGAGAGAACTACTTCAAGGATCTAAATTACTATGGTATAAGGCTCAGAGGAG 1201
Query 1184 TGGCTCATGCAGCAAAAAATTACCAGATAATAATTGAAGAGAATCGAAGACTTTACAATG 1243
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1202 TGGCTCATGCAGCAAAAAATTATCAGATAATCATTGAAGAGAATCGAAGACTTTACAATG 1261
Query 1244 AAGTGCAAGAATTAAAAGGAAATATTAGAGTATATTGCCGGATAAGACCATTCCTTCAAG 1303
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1262 AAGTGCAAGAATTAAAAGGAAATATTAGAGTGTATTGCCGGATAAGACCATTCCTTCAAG 1321
Query 1304 GACAAAACAAGAAACAAACATCAATAGAGTACACAGGTGAGAATGGTGAACTGGTGGTTG 1363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1322 GACAAAACAAGAAACAAACATCAATAGAGTACACAGGTGAGAATGGTGAACTGGTGGTTG 1381
Query 1364 CAAATCCCTTAAAGCAAGGCAAAGATACGTATCGTTTATTCAAATTCAACAAAGTCTTTG 1423
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1382 CAAATCCCTTAAAGCAAGGCAAAGATACGTATCGGTTATTCAAATTCAACAAAGTCTTTG 1441
Query 1424 GCCCTGAATCAACTCAAGAGGAAGTTTTCTTAGATACTCGACC-TATGATTCGATCCATT 1482
|||||| ||||||||||||||||||||||||||||||| |||| | ||||||||||||||
Sbjct 1442 GCCCTGCATCAACTCAAGAGGAAGTTTTCTTAGATACTAGACCGT-TGATTCGATCCATT 1500
Query 1483 CTTGATGGCTACAATGTATGTATATTTGCTTATGGCCAGACGGGTTCTGGAAAGACTTAT 1542
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1501 CTTGATGGCTACAATGTATGTATATTTGCTTACGGCCAGACAGGTTCTGGAAAGACTTAT 1560
Query 1543 ACGATGAGTGGACCAAGCATAACTTCAGAAGAAGATCGGGGTGTTAACTATCGAGCTTTG 1602
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1561 ACAATGAGTGGACCAAGCATAACTTCAGAAGAAGATTGGGGTGTTAACTATCGAGCTTTG 1620
Query 1603 AATGACTTGTTCCACTTAACTCAAAGTAGACAAAACTCAGTGATGTATGAAGTTGGTGTT 1662
||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||
Sbjct 1621 AATGACTTGTTCCACTTAACTCAAAGTAGACAAAACTCAGTTATATATGAAGTTGATGTT 1680
Query 1663 CAAATGGTTGAGATTTACAATGAGCAAGTTCGTGACCTACTTTCTCAGGATGTTCCTGAT 1722
||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||
Sbjct 1681 CAAATGGTTGAGATTTACAATGAGCAAGTTCGTGATCTACTATCTGAGGATGTTCCTGAT 1740
Query 1723 GCAAGCATGCATTCTGTAAGATCAACTGAAGATGTTCTTGAACTGATGAATATTGGGTTG 1782
||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||
Sbjct 1741 GCAAGCATGCATTCTGTAAAATCAACTGAAGATGTTCTCGAATTGATGAATATTGGGTTG 1800
Query 1783 ATGAATAGAACTGTTGGCGCCACAACCCTTAATGAAAAGAGTAGTAGATCACACAGTGTT 1842
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1801 ATGAATAGAACTGTTGGTGCCACAACCCTTAATGAAAAGAGCAGTAGATCACACAGTGTT 1860
Query 1843 CTTTCGGTTCATGTACGCGGTGTTGATGTTAAAACGGAATCCGTCTTGCGTGGTAGTTTG 1902
||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1861 CTTTCTGTTCATGTACGCGGTGTTGATGTCAAAACCGAATCCGTCTTGCGTGGTAGTTTG 1920
Query 1903 CATTTGGTTGATCTTGCTGGAAGTGAGAGAGTTGGTCGCTCTGAAGTAACCGGAGAGAGA 1962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1921 CATTTGGTTGATCTTGCTGGAAGTGAGAGAGTTGGTCGCTCTGAAGTAACCGGAGAGAGA 1980
Query 1963 CTCAAAGAAGCTCAACATATAAACAAATCATTGTCTGCTCTCGGAGATGTTATATTCGCT 2022
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1981 CTCAAAGAAGCTCAATATATAAAAAAATCATTGTCTGCTCTCGGAGATGTTATATTCGCT 2040
Query 2023 CTAGCACATAAGAATCCTCATGTACCTTATAGAAACAGCAAGCTAACACAAGTCCTCCAG 2082
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2041 CTCGCACATAAGAATCCTCATGTACCGTATAGAAACAGCAAGCTAACACAAGTCCTCCAG 2100
Query 2083 AATTCTTTAGGAGGGCAAGCGAAAACTCTTATGTTTGTTCAAATTAATCCTGATGAAGAT 2142
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2101 AATTCTTTAGGAGGACAAGCAAAAACTCTTATGTTTGTTCAAATTAATCCTGATGAAGAT 2160
Query 2143 TCATATGCTGAGACTGTAAGTACTTTGAAATTTGCGGAAAGAGTTTCTGGTGTCGAGTTA 2202
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2161 TCATATGCTGAGACTGTAAGTACTTTGAAATTAGCGGAAAGAGTTTCTGGTGTCGAGTTA 2220
Query 2203 GGTGCAGCTAGAAGCTATAAGGAAGGAAGAGATGTTAGACAACTCATGGAACAGGTATCG 2262
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2221 GGTGCAGCTAGAAGCTATAAGGAAGGACGAGATGTTAGACAACTCATGGAACAGGTATCG 2280
Query 2263 AACTTGAAAGATATGATTGCCAAGAAAGACGAAGAACTTCAAAAGTTTCAAAACATAAAT 2322
||||||| ||||||||||||||||||||| |||||||||||||||||||| ||| ||||
Sbjct 2281 AACTTGAGAGATATGATTGCCAAGAAAGATGAAGAACTTCAAAAGTTTCAGAACGTAAAC 2340
Query 2323 GGTATCCAAAAACGTGGATTAAGCAAACTAAGAATTGTCTCTCCTCCTAGAAGGCATTCT 2382
| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 2341 GTTATCCAAAAACGTGGATTAAGCAAACTAAGAATTGTCTCTCCTACTAGAAGACATTCT 2400
Query 2383 TTAGGAGGAGCTTTAACAAATTCTCCAAGAAGAAGACAAGGACCTGGTTTACTTGGAAGA 2442
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2401 TTAGGAGGAGCTTTAACAAATTCTCCAAGAAGAAGACAAGGGTCTGGTTTACTTGGAAGA 2460
Query 2443 ACAACTTCAGATAT-A-CA--T---CGAC--A-TCAAAATGAATCTCGATCATCGTCTAA 2492
|||||||||||| | | || | || | | |||||||||||||||||||||||||||
Sbjct 2461 ACAACTTCAGAT-TCAGCAGATGAACGTCGCAATCAAAATGAATCTCGATCATCGTCTAA 2519
Query 2493 GTTTTCTGGTGGGGCTAAAGACAATAATATATTTGAGGATACTGAACTCTTAGGTTTTGA 2552
||||||||||||||||||||||||| ||||||||||||||| |||||| ||||| ||||
Sbjct 2520 GTTTTCTGGTGGGGCTAAAGACAATGATATATTTGAGGATATTGAACTTTTAGGCCTTGA 2579
Query 2553 AGAATCAAATAATGAGGAAAGATTGAGTGATATCTCAGATAGTTGTCTTTCAATGGGAAC 2612
||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2580 AGATTCAGATAATGAGGAAAGATTGAGTGATATCTCTGATAGTTGTCTTTCAATGGGAAC 2639
Query 2613 AGAAACTGATGGCTCGATTAGTAGCGGTGCAATGGAGTTGACACTCTTCCCTGAAACCTC 2672
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 2640 AGAAACTGATGGCTCGATTAGTAGCGGTGCGATGGGGTTGACACTCTTCCCTGAAACCTC 2699
Query 2673 AAATCCTCCTGAAATGTTTGAACAA 2697
|||||||||||||||||||||||||
Sbjct 2700 AAATCCTCCTGAAATGTTTGAACAA 2724
Score = 560 bits (303), Expect = 2e-158
Identities = 341/359 (95%), Gaps = 4/359 (1%)
Strand=Plus/Plus
Query 1 ATGAAAAATCGAATCAAAAAAGGATCCAGCATGATTGGTGTTTATGGAAGATCAGACGGA 60
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGAAAAATCGAATCAAAGAAGGATCCAGCATGATTGGTGTTTATGGAAGATCAGATGGA 60
Query 61 TCAAGCAGCATTC--AGTCTTCTAATGGATCCGAAAGTCGTGAAAGTATAGATGACAATA 118
||||||||||||| ||| || ||||||||||||||||||||||||||||||||||| ||
Sbjct 61 TCAAGCAGCATTCTGAGT-TT-TAATGGATCCGAAAGTCGTGAAAGTATAGATGACACTA 118
Query 119 AGCAAGGTCATCAAAGTTTAGTAGAGTGGTTAAATGAGACACTTCCTTATTTGAATTTAC 178
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 119 AGCAAGGTCATCAAAGTTTAGTAGAATGGTTAAATGAGACACTTCCTTATTTGAATTTAC 178
Query 179 CATGGGAAGCTTCAGAGGAAGAATTGAGAGCATGTTTGGTGGATGGTACTGTCTTGTGCA 238
||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 179 CATGGGAGGCTTCAGAGGAAGAATTGAGAGCATGTTTGCTGGATGGAACTGTCTTGTGCA 238
Query 239 ATCTCTTAAATCAGCTTAGTCCCGGTTCGATGCGAATGGGAGGAAGCTTCGAGCCTGGTT 298
||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 239 ATCTCTTGAATCAGCTTAGTCCCGGTTCGATGCGAATGGGAGGTAGCTTTGAGCCTGGTT 298
Query 299 GTGTAAATATTGAGCGGTTTTTGGCAGCTATGGATGAAATGACATTGCCCAGATTTGAG 357
| ||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 299 GCGTAAATAATGAGCGGTTTTTGGCAGCTATGGATGAAATGGCATTGCCGAGATTTGAG 357
Score = 183 bits (99), Expect = 5e-45
Identities = 141/161 (88%), Gaps = 4/161 (2%)
Strand=Plus/Plus
Query 2728 GTTGGACCATCAAAGCCACTGAAACATACACCAAAACCAGACATAAGTAAACCTTCTCGT 2787
|||||| ||||||||||| |||| |||||||||| | |||||| || | ||||||||||
Sbjct 2824 GTTGGAACATCAAAGCCAGTGAAGCATACACCAAGAGCAGACAAAACCAGACCTTCTCGT 2883
Query 2788 CTGTCGATTTC-CACTACCTCATCTAAGGCTTTAACAAGTTCTAAAAGACCGGTCACTGG 2846
||||||||||| || || ||| |||||||||||||||||||||||||||| |||||||
Sbjct 2884 CTGTCGATTTCTAAC-ACTTCAGCTAAGGCTTTAACAAGTTCTAAAAGACCAATCACTGG 2942
Query 2847 CATTT-CATCTTCAGTAAAACCTCTTAACAGAAAGAGATAA 2886
|||| |||||||||||||||||||||||| |||||||||
Sbjct 2943 -ATTTTCATCTTCAGTAAAACCTCTTAACATTAAGAGATAA 2982
Score = 106 bits (57), Expect = 1e-21
Identities = 59/60 (98%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 356 AGTCTCTTAAGGCGCTTAAAGCTAGTTTCTCTGATGATGGATATGATAAGAATACACTTT 415
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 382 AGTCTCTTAAGGCACTTAAAGCTAGTTTCTCTGATGATGGATATGATAAGAATACACTTT 441
Score = 102 bits (55), Expect = 1e-20
Identities = 64/68 (94%), Gaps = 2/68 (3%)
Strand=Plus/Plus
Query 459 AGTTGATAGCAACTTTAATGATGGAGGATCACAGTTTATAG-AAGCATCTGAGATTAATA 517
|||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||
Sbjct 444 AGTTGATAGCAACTTTAATGATGGAGGATCACAGTTTA-AGGAAGCATCTGAGATCAATA 502
Query 518 CATCTCAT 525
| ||||||
Sbjct 503 CGTCTCAT 510
> Ahg474991 jgi|Araly1|474991|fgenesh2_kg.2__121__AT1G63640.1
Length=3749
Score = 568 bits (307), Expect = 1e-160
Identities = 513/614 (84%), Gaps = 8/614 (1%)
Strand=Plus/Plus
Query 1717 CCTGATGCAAGCATGCATTCTGTAAGATCAACTGAAGATGTTCTTGAACTGATGAATATT 1776
||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||
Sbjct 2288 CCTGATGCAAGCATGCATTGTGTGAGATCAACAGAAGATGTTCTTGAACTGATGAATATT 2347
Query 1777 GGGTTGATGAATAGAACTGTTGGCGCCACAACCCTTAATGAAAAGAGTAGTAGATCACAC 1836
|| | ||||| ||||| || || || ||| | || ||||||| ||| ||||||||||||
Sbjct 2348 GGACTAATGAACAGAACCGTGGGTGCTACAGCTCTCAATGAAAGGAGCAGTAGATCACAC 2407
Query 1837 AGTGTTCTTTCGGTTCATGTACGCGGTGTTGATGTTAAAACGGAATCCGTCTTGCGTGGT 1896
|||||||||| || |||||||| |||||||| || |||| || || | ||||| ||
Sbjct 2408 TGTGTTCTTTCTGTCCATGTACGTGGTGTTGACGTGGAAACCGATTCAATTTTGCGGGGC 2467
Query 1897 AGTTTGCATTTGGTTGATCTTGCTGGAAGTGAGAGAGTTGGTCGCTCTGAAGTAACCGGA 1956
||||||||||| ||||| ||||| ||||||||||| |||| ||||||||| | |||||||
Sbjct 2468 AGTTTGCATTTAGTTGACCTTGCAGGAAGTGAGAGGGTTGATCGCTCTGAGGCAACCGGA 2527
Query 1957 GAGAGACTCAAAGAAGCTCAACATATAAACAAATCATTGTCTGCTCTCGGAGATGTTATA 2016
|||||||| || |||||||||||||||||||||||||| || || || || || || ||
Sbjct 2528 GAGAGACTTAAGGAAGCTCAACATATAAACAAATCATTATCAGCCCTTGGCGACGTCATC 2587
Query 2017 TTCGCTCTAGCACATAAGAATCCTCATGTACCTTATAGAAACAGCAAGCTAACACAAGTC 2076
|| ||| |||| || ||||| |||||||| || || || |||||||| | || ||||||
Sbjct 2588 TTTGCTTTAGCGCACAAGAACCCTCATGTTCCGTACAGGAACAGCAAATTGACTCAAGTC 2647
Query 2077 CTCCAGAA-TTCTTTAGGAGGGCAAGCGAAAACTCTTATGTTTGTTCAAATTAATCCTGA 2135
|| || || |||||| || || || || ||||||||||||||||| ||| | ||||||||
Sbjct 2648 CTTCA-AAGTTCTTTGGGTGGACAGGCTAAAACTCTTATGTTTGTCCAAGTCAATCCTGA 2706
Query 2136 TGAAGATTCATATGCTGAGACTGTAAGTACTTTGAAATTTGCGGAAAGAGTTTCTGGTGT 2195
|| |||||| ||||||||||| ||||| ||||||||||| || ||||| |||||||||||
Sbjct 2707 TGGAGATTCTTATGCTGAGACCGTAAGCACTTTGAAATTCGCTGAAAGGGTTTCTGGTGT 2766
Query 2196 CGAGTTAGGTGCAGCTAGAAGCT-ATAAGGAAGGAAGAGATGTTAGACAACTCATGGAAC 2254
||||||||||| || | ||| | |||| || || ||||||| ||||||||||||||||
Sbjct 2767 GGAGTTAGGTGCTGCCAAAAG-TAATAAAGAGGGTCGAGATGTCAGACAACTCATGGAAC 2825
Query 2255 AGGTATCGAACTTGAAAGATATGATTGCCAAGAAAGACGAAGAACTTCAAAAGTTTCAA- 2313
|||||||||||||||| ||| | ||||| |||||||| ||||| |||||||| |||| |
Sbjct 2826 AGGTATCGAACTTGAAGGATGTAATTGCTAAGAAAGATGAAGAGCTTCAAAA-TTTCCAG 2884
Query 2314 AA-CATAAATGGTA 2326
|| | |||| ||||
Sbjct 2885 AAGC-TAAAAGGTA 2897
Score = 154 bits (83), Expect = 4e-36
Identities = 167/206 (81%), Gaps = 12/206 (6%)
Strand=Plus/Plus
Query 2488 TCTAAGTTTTCTGGTGGGGCTAAA-GACAAT-AATAT-AT-TTGAGGATACTGAACTCTT 2543
||||||||| |||| ||||| ||| || | | | | | || ||| ||| ||||||| |
Sbjct 3134 TCTAAGTTTGCTGGAGGGGCGAAAGGA-ATTGATTTTGATGATGAAGATGTTGAACTCGT 3192
Query 2544 AGGTTTTGAAGAAT-CAAATAATGAGGAAAGATTGAGTGATATCTCAGATAGTTGTCTTT 2602
||| ||| || || || || |||||||||||||||||||||||| |||||||||||||
Sbjct 3193 AGGCCTTGCAG-ATGCAGATTCTGAGGAAAGATTGAGTGATATCTCTGATAGTTGTCTTT 3251
Query 2603 CAATGGGAACAGAAACTGATGGCTCGATTAGTAGCGGTGCAATGGAGTTGACACTCTTCC 2662
|||||||||||||||||||||| || || | ||| ||||| |||||||||| || ||||
Sbjct 3252 CAATGGGAACAGAAACTGATGGATCCAT-A--AGCAGTGCAGTGGAGTTGACTCTATTCC 3308
Query 2663 CTGAAACCT-CAAATCCTCCTGAAAT 2687
||||||| | | || |||| ||||||
Sbjct 3309 CTGAAAC-TGCTAAGCCTCTTGAAAT 3333
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108938100700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5