BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41315.1
Length=1929
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493847 jgi|Araly1|493847|fgenesh2_kg.7__3280__AT5G41315.1 3103 0.0
Ahg474990 jgi|Araly1|474990|fgenesh2_kg.2__120__AT1G63650.2 575 4e-163
> Ahg493847 jgi|Araly1|493847|fgenesh2_kg.7__3280__AT5G41315.1
Length=1929
Score = 3103 bits (1680), Expect = 0.0
Identities = 1847/1930 (96%), Gaps = 2/1930 (0%)
Strand=Plus/Plus
Query 1 CAATGGCTACCGGACAAAACAGAACAACTGTGCCAGAGAATCTGAAGAAACACCTCGCAG 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 CAATGGCTACCGGACAAAACAGAACAACTTTGCCAGAGAATCTGAAGAAACACCTCGCAG 60
Query 61 TTTCAGTTCGAAACATTCAATGGAGTTATGGTATCTTTTGGTCTGTCTCTGCTTCTCAGT 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 TTTCAGTTCGAAACATTCAATGGAGTTATGGTATCTTTTGGTCTATCTCTGCTTCTCAGT 120
Query 121 CTGGAGTTTTAGAATGGGGAGATGGATACTATAATGGAGATATCAAAACGAGGAAGACGA 180
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 121 CTGGAGTATTAGAATGGGGAGATGGATATTATAATGGAGATATCAAAACGAGGAAGACGA 180
Query 181 TTCAAGCTTCGGAGATCAAAGCTGATCAGCTTGGTCTACGGAGGAGCGAGCAGCTTAGCG 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 181 TTCAAGCTTCGGAGATCAAAGCTGATCAGCTTGGTCTACGGAGGAGCGAGCAACTTAGCG 240
Query 241 AGCTTTACGAGTCTCTCTCCGTCGCTGAATCTTCTTCTTCAGGCGTTGCTGCCGGATCTC 300
|||||||||||||||||||| |||||||||||||||| || |||| || ||||||||
Sbjct 241 AGCTTTACGAGTCTCTCTCCATCGCTGAATCTTCTTCCTCCGGCGCAGCCAACGGATCTC 300
Query 301 AAGTCACCAGACGAGCTTCCGCCGCCGCACTTTCACCGGAAGATCTCGCCGACACCGAGT 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 301 AAGTCACCAGACGAGCTTCCGCCGCCGCACTTTCACCGGAAGATCTAGCCGACACCGAGT 360
Query 361 GGTACTATTTGGTTTGTATGTCTTTCGTCTTCAACATTGGTGAAGGAATGCCTGGACGGA 420
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 361 GGTACTACTTGGTTTGTATGTCTTTCGTCTTCAACATTGGTGAAGGAATGCCTGGCCGGA 420
Query 421 CGTTTGCAAACGGTGAACCGATATGGTTGTGCAACGCTCATACGGCGGATAGTAAAGTGT 480
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 421 CGTTTGCGAACGGTGAACCGATATGGTTGTGCAACGCTCATACGGCGGATAGTAAAGTTT 480
Query 481 TTAGCCGTTCTCTTCTAGCAAAAAGTGCTGCGGTTAAGACAGTGGTTTGCTTCCCGTTCC 540
||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 481 TTAGCCGCTCTCTTCTAGCAAAAAGTGCTTCGGTTAAGACAGTGGTTTGCTTCCCGTTTC 540
Query 541 TTGGAGGAGTCGTTGAGATTGGTACCACAGAACATATTACGGAAGACATGAATGTAATAC 600
|||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||
Sbjct 541 TTGGAGGAGTCGTTGAGATTGGTACCACCGAACATATTACAGAAGACATGAACGTAATAC 600
Query 601 AATGCGTGAAGACATCATTCCTCGAAGCCCCTGATCCGTACGCTACAATATTACCAGCAA 660
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 601 AATGCGTGAAGACATCATTCCTCGAAGCCCCTGATCCTTACGCTACAATATTACCAACAA 660
Query 661 GATCCGATTATCACATCGACAACGTTCTTGATCCGCAACAGATTCTAGGCGACGAGATTT 720
||||||||| |||||| ||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 661 GATCCGATTTTCACATGGACAACGTTCTCGATCCTCAACAGATTCTAGGCGACGAGATTT 720
Query 721 ACGCGCCTATGTTCAGTACGGAGCCTTTTCCAACAGCTTCTCCGAGCAGAACTACCAACG 780
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 721 ACGCGCCTATGTTCAGTTCGGAGCCTTTTCCAACAGCTTCTCCGAGCAGGACTACCAACG 780
Query 781 GTTTCGATCAAGAACATGAACAAGTAGCAGATGATCATGATTCTTTCATGACCGAAAGAA 840
|||| |||| |||||||||||||||||||| ||||| ||||| ||||||||||||||||
Sbjct 781 GTTTTGATCCGGAACATGAACAAGTAGCAGAAGATCACGATTCGTTCATGACCGAAAGAA 840
Query 841 TCACTGGAGGAGCTTCTCAGGTGCAAAGCTGGCAGCTCATGGACGACGAGCTTAGTAACT 900
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TCACTGGGGGAGCTTCTCAGGTGCAAAGCTGGCAGCTCATGGACGACGAGCTTAGTAACT 900
Query 901 GCGTTCACCAGTCGCTAAATTCCAGCGATTGCGTCTCTCAAACGTTTGTTGAAGGGGCGG 960
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GCGTTCACCAGTCGCTTAATTCCAGCGATTGCGTCTCTCAAACGTTTGTTGAAGGGGCGG 960
Query 961 CTGGACGGGTTGCTTACGGTGCAAGAAAGAGTAGAGTTCAAAGACTAGGGCAAATTCAAG 1020
||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 961 CTGGACGGGTTTCTTACGGTGCAAGAAAGAGTAGGGTTCAAAGGCTAGGGCAAATTCAAG 1020
Query 1021 AGCAACAGAGAAATGTGAAGACATTGTCATTTGATCCAAGAAACGACGACGTTCATTACC 1080
|||| || |||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 1021 AGCAGCAAAGAAATGTGAAGACGTTGTCATTTGATCCAAAAAACGACGACGTTCATTACC 1080
Query 1081 AAAGTGTGATCTCAACGATTTTTAAGACCAACCATCAGTTAATTCTCGGACCGCAGTTTC 1140
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1081 AAAGTGTGATCTCCACGATTTTTAAGACCAATCATCAGTTAATTCTCGGACCGCAGTTTC 1140
Query 1141 GAAACTGCGATAAACAGTCAAGCTTCACTAGGTGGAAGAAATCATCGT-CATCATCATCA 1199
||||||||||||| |||||||||||||| ||||||||||||||||| | |||||||||||
Sbjct 1141 GAAACTGCGATAAGCAGTCAAGCTTCACGAGGTGGAAGAAATCATC-TCCATCATCATCA 1199
Query 1200 GGAACCGCCACGGTCACGGCACCATCACAAGGAATGTTAAAGAAAATTATTTTCGATGTT 1259
||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1200 GGAACCGCCACGGTCTCTGCACCATCACAAGGAATGTTAAAGAAAATTATTTTCGAGGTT 1259
Query 1260 CCGCGAGTGCACCAGAAAGAGAAGTTAATGTTGGACTCACCAGAAGCCAGAGATGAAACT 1319
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1260 CCGCGAGTGCACCAGAAAGAGAAGTTAATGTTGGACTCACCAGAGGCCAGAGATGAAACC 1319
Query 1320 GGGAACCATGCGGTTTTAGAGAAGAAGCGCCGCGAGAAATTGAACGAACGGTTCATGACC 1379
|||||||| ||||||||||||||||| || || |||||||||||||||||||||| || |
Sbjct 1320 GGGAACCACGCGGTTTTAGAGAAGAAACGGCGTGAGAAATTGAACGAACGGTTCACGATC 1379
Query 1380 TTGAGAAAAATCATTCCGTCAATCAACAAGATCGATAAAGTATCGATTCTTGACGATACG 1439
|||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1380 TTGAGATCAATCATTCCGTCAATCAACAAGATCGACAAAGTATCGATTCTTGACGATACG 1439
Query 1440 ATAGAGTATCTTCAAGAACTCGAGAGACGGGTTCAAGAACTAGAATCTTGCAGAGAATCA 1499
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1440 ATAGAGTATCTTCAAGAACTCGAGAGACGGGTTCTAGAACTAGAATCTTGCAGAGAATCA 1499
Query 1500 ACCGATACAGAGACTCGTGGGACGATGACGATGAAGAGGAAGAAACCATGCGACGCAGGA 1559
|| |||||||| || |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1500 ACTGATACAGAAACCCGTGGGACGATGACGATGAAGAGGAAGAAACCATGCGATGCAGGA 1559
Query 1560 GAAAGAACATCAGCTAATTGCGCAAATAATGAAACAGGAAATGGGAAGAAGGTGTCGGTT 1619
||||||||||||||||||||| |||| |||||||| ||||||||||||||||| ||||||
Sbjct 1560 GAAAGAACATCAGCTAATTGCACAAACAATGAAACCGGAAATGGGAAGAAGGTTTCGGTT 1619
Query 1620 AACAATGTTGGTGAAGCCGAGCCAGCAGATACCGGTTTTACTGGTTTAACCGATAATTTA 1679
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1620 AACAATGTTGGTGAAGCCGAGCCAGCAGATACTGGTTTTACCGGTTTAACCGATAATTTA 1679
Query 1680 AGGATCGGTTCGTTTGGTAATGAGGTGGTTATTGAGCTTAGATGTGCTTGGAGAGAAGGA 1739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 AGGATCGGTTCGTTTGGTAATGAGGTGGTTATTGAGCTTAGATGTGCTTGGAGAGAAGGA 1739
Query 1740 GTATTGCTTGAGATAATGGATGTGATTAGTGATCTCCATTTGGATTCTCATTCGGTTCAA 1799
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1740 GTATTGCTTGAGATAATGGATGTGATTAGTGATCTCAACTTGGATTCTCATTCGGTTCAA 1799
Query 1800 TCCTCGACCGGAGACGGTTTGCTCTGCTTAACCGTCAATTGCAAGCACAAGGGGTCAAAA 1859
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1800 TCCTCTACCGGAGACGGTTTGCTCTGCTTAACCGTCAATTGCAAGCACAAGGGGTCAAAA 1859
Query 1860 ATAGCGACACCAGGAATGATCAAAGAAGCACTTCAAAGGGTTGCATGGATCTGTTGAAGA 1919
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1860 ATAGCGACACCAGGAATGATCAAAGAGGCACTTCAAAGGGTTGCATGGATCTGTTGAAGA 1919
Query 1920 CTACTTAGTT 1929
| ||||||||
Sbjct 1920 CAACTTAGTT 1929
> Ahg474990 jgi|Araly1|474990|fgenesh2_kg.2__120__AT1G63650.2
Length=2003
Score = 575 bits (311), Expect = 4e-163
Identities = 844/1088 (78%), Gaps = 89/1088 (8%)
Strand=Plus/Plus
Query 845 TGGAGGAGCTTCTCAGGTGCAAAGCTGGCAG-CTCATGGACGACGAGCTTAGTAACTGCG 903
||| || || |||||||| |||||||||||| | ||| || || || |||||||||
Sbjct 857 TGGTGGTGCGTCTCAGGTACAAAGCTGGCAGTTTGTTGG-TGAAGAACTCAGTAACTGCA 915
Query 904 TTCACCAGTCGCTAAATTCCAGCGATTGCGTCTCTCAAACGTTTGTTGAAGGGGCGGCTG 963
||||||| ||| |||| || ||||||||||| || |||||||||||| || | |||
Sbjct 916 TTCACCAATCGTTAAACTCTAGCGATTGCGTTTCCCAAACGTTTGTT---GGAACAACTG 972
Query 964 GACGGGTTGCTTACGGTGCAAGAAAGAGTAGAGTTCAAAGACTAGGGCAAATTCAAGAGC 1023
| || ||||||| || | |||| |||||||| |||||| | |||| || |||| || |
Sbjct 973 GGCGAGTTGCTTGCGATACAAGGAAGAGTAGGGTTCAACGGTTAGGTCAGATTC-AG-G- 1029
Query 1024 AACAGAGAAATGTGAAGACATTGTCATTTGATCCAAGAAACGACGACGTTCATTACCAAA 1083
||| || | || || || ||| | | || | |||| || ||||||||||||
Sbjct 1030 AAC--AG--A-GT-AA-CCA-TGT-A----A-ACATG-GACGATGATGTTCATTACCAAG 1074
Query 1084 GTGTGATCTCAACGATTTTTAAGACCAAC-CATCAGTTAATTCTCGGACCGCAGTTTCGA 1142
| |||||||| |||||||| || | |||| |||||| |||| |||||||||||||||| |
Sbjct 1075 GGGTGATCTCGACGATTTTCAA-AACAACGCATCAGCTAATACTCGGACCGCAGTTTC-A 1132
Query 1143 -AACTGCGATAAACAGTCAAGCTTCACTAGGTGGAAGAAATCATCGTCATCATCATCAGG 1201
|||| |||||| | ||| |||||||| ||||||||| |||| ||||| | | |
Sbjct 1133 GAACTTCGATAAGCGGTCTAGCTTCACAAGGTGGAAGCGATCA---TCATC--CGT--GA 1185
Query 1202 AACCGCCACGGTCACG-GCACCATCACAAGGA-ATGTTAAAGAAAATTA-TTTTCGATGT 1258
|| || || | | | | ||| | || | ||| ||||||| | || | ||||| ||
Sbjct 1186 AAACG--TTGG-GA-GAG-A-AATCGC-AGAAGATGATAAAGAAGA-TACTCTTCGAAGT 1237
Query 1259 TCCGC-GAGTGCACCAGAAAGAGAAGTTAATGTTGGACTCACCAGA-A-GCCAGAGATGA 1315
||| | || || || || || ||||| | ||| | | ||| || | |||||| ||
Sbjct 1238 TCCTCTGA-TGAACAAG-AA-AGAAG---A-GTT-G--TTACCGGACACACCAGAG--GA 1285
Query 1316 AACTGGGAACCATGCGGTT-TTAGAGAAGAAGCGCCGCGAGAAATTGAACGAACGGTTCA 1374
||| ||||||||||| ||| | |||||||| ||||| || |||||||| ||||||||||
Sbjct 1286 AACCGGGAACCATGC-GTTGTCCGAGAAGAAACGCCGTGAAAAATTGAATGAACGGTTCA 1344
Query 1375 TGACCTTGAGAAAAATCATTCCGTCAATCAACAAGATCGATAAAGTATCGATTCTTGACG 1434
|||| |||||| ||||||||| ||||| | ||||| |||||||| ||||||||||| |
Sbjct 1345 TGACATTGAGATCAATCATTCCCTCAATTAGTAAGATTGATAAAGTGTCGATTCTTGATG 1404
Query 1435 ATACGATAGAGTATCTTCAAGAAC-TCGAGAGACGGGTTCAAGAACTAGAATCTTGCAGA 1493
|||| || |||||||||||||||| || | | | ||||||||||| | |||| ||| |||
Sbjct 1405 ATACAATTGAGTATCTTCAAGAACTTC-AAAAAAGGGTTCAAGAATTGGAATATTGTAGA 1463
Query 1494 GAATCAACCGATACAGAGACTCGTGGGACGATGACGATGAAGAGGAAGAAACCATG-CGA 1552
||||| | |||||||||| || | | || ||||||||||||||||||||| | ||
Sbjct 1464 GAATCTGCGGATACAGAGA--CG-CGAATGACGACGATGAAGAGGAAGAAACC-GGAGGA 1519
Query 1553 CGCAGG-AGAAAGAACATCAGCTAATTGCGCAAATAATGAAACAGGAAATG-GGAAGAAG 1610
| ||| ||||||| |||| || |||| | | ||| |||| | || | ||||| |
Sbjct 1520 TG-AGGAAGAAAGAGCATCGGCGAATT--G----T-ATG-AACA-GCAA-GAGGAAG-GG 1567
Query 1611 GTGTCGGTTAACAATGTTGGTGAAGCCGAGCCAGCA-GATACCGGTTTTACTGGTTTAAC 1669
| || | | ||||| || |||| || || | | |||||||||| | ||||| ||||
Sbjct 1568 GAGT--GATGTGAATGTAGGAGAAGATGAACC-GAATGATACCGGTTATGCTGGTCTAAC 1624
Query 1670 CGATAATTTAAGGATCGGTTCGTTTGGTAATGAGGTGGTTATTGAGCTTAGATGTGCTTG 1729
|||||| ||||||||| |||| || ||||| |||||||||||||||||||||||||||||
Sbjct 1625 CGATAACTTAAGGATCAGTTCATTAGGTAACGAGGTGGTTATTGAGCTTAGATGTGCTTG 1684
Query 1730 GAGAGAAGG-AGTATTGCTTGAGATAATGGATGTGATTAGTGATCTCCATTTGGATTCTC 1788
||||||||| | |||| ||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1685 GAGAGAAGGGA-TATTACTTGAGATAATGGATGTGATTAGTGATCTTAACTTGGATTCTC 1743
Query 1789 ATTCGGTTCAATCCTCGACCGGAGACGGTTTGCTCTGCTTAACCGTCAATTGCAAGCACA 1848
| || || ||||| || || ||||||||||| |||||| ||||||| || |||||||| |
Sbjct 1744 ACTCAGTACAATCGTCAACTGGAGACGGTTTACTCTGCGTAACCGTTAACTGCAAGCATA 1803
Query 1849 AGGGGTCAAAAATAGCGACACCAGGAATGATCAAAGAAGCACTTCAAAGGGTTGCATGGA 1908
| ||| |||||||||| ||| ||||||||||| |||| ||||||||||||||||||||||
Sbjct 1804 AAGGGACAAAAATAGCAACAACAGGAATGATCCAAGAGGCACTTCAAAGGGTTGCATGGA 1863
Query 1909 TCTGTTGA 1916
| ||||||
Sbjct 1864 TATGTTGA 1871
Score = 556 bits (301), Expect = 2e-157
Identities = 560/681 (82%), Gaps = 34/681 (5%)
Strand=Plus/Plus
Query 1 CAATGGCTACCGGACAAAACAGAACAACTGTGCCAGAGAATCTGAAGAAACACCTCGCAG 60
||||||| |||||| ||||||| ||| ||||| || ||||| |||||||| |||||||
Sbjct 79 CAATGGCAACCGGAGAAAACAG---AACGGTGCCGGAAAATCTAAAGAAACAGCTCGCAG 135
Query 61 TTTCAGTTCGAAACATTCAATGGAGTTATGGTATCTTTTGGTCTGTCTCTGCTTCTCAGT 120
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 136 TTTCAGTTCGAAACATTCAATGGAGTTATGGAATCTTCTGGTCTGTCTCTGCTTCTCAAC 195
Query 121 CTGGAGTTTTAGAATGGGGAGATGGATACTATAATGGAGATATCAAAACGAGGAAGACGA 180
| ||||| || || |||||||||||||| || |||||||| || || || ||||||||||
Sbjct 196 CAGGAGTGTTGGAGTGGGGAGATGGATATTACAATGGAGACATTAAGACAAGGAAGACGA 255
Query 181 TTCAAGCTTC-GGAGATCAAAGCTGATCAGCTT-GGTCTACG-GAGGAGCGAGCAGCTTA 237
||||||| | | || |||||| ||| ||| || ||||| | ||| || ||||||||||
Sbjct 256 TTCAAGCAGCAGAAG-TCAAAGTTGACCAG-TTAGGTCT-TGAGAGAAGTGAGCAGCTTA 312
Query 238 GCGAGCTTTACGAGTCTCTCTCCGTCGCTGAATCTTCTTCTTCAGGCGTTGCTGCCGGAT 297
| |||||||| || ||||||||| ||||||||||||| |||| || | | || |
Sbjct 313 GAGAGCTTTATGATTCTCTCTCCCTCGCTGAATCTTCAACTTC---CG--G-T---GGCT 363
Query 298 CTCAAGTCACCAGACGAGCTTCCGCCGCCGCACTTTCACCGGAAGATCTCGCCGACACCG 357
|||| ||||| |||||||||||||||||||| || ||||||||||| ||| |||||||||
Sbjct 364 CTCAGGTCACTAGACGAGCTTCCGCCGCCGCTCTCTCACCGGAAGACCTCACCGACACCG 423
Query 358 AGTGGTACTATTTGGTTTGTATGTCTTTCGTCTTCAACATTGGTGAAGGAATGCCTGGAC 417
|||||||||| || || || |||||||||||||||||||||||||||||||| || |||
Sbjct 424 AGTGGTACTACTTAGTATGCATGTCTTTCGTCTTCAACATTGGTGAAGGAATCCCAGGA- 482
Query 418 GGA-CGTT-TGCAAACGGTGAACCGATATGG-TTGTGCAACGCTCATACGGCGGATAGTA 474
||| | || | ||| ||| ||||| |||||| || || ||||| | || || ||||| |
Sbjct 483 GGAGCATTATCCAA-CGGAGAACCAATATGGCTT-TGTAACGCAGAAACCGCCGATAGCA 540
Query 475 AAGTGTTTAGC-CGTTCTCTTCTAGCAAAAAGTGCTGCGGTT-AAGACAGTGGTTTGCTT 532
|||| || | | |||||||||||||| ||||||||| || || || ||||||||||||||
Sbjct 541 AAGTCTTCA-CTCGTTCTCTTCTAGCTAAAAGTGCTTCGCTTCAA-ACAGTGGTTTGCTT 598
Query 533 CCCGTTCCTTGGAGGAGTCGTTGAGATTGGTACCACAGAACATATTACGGAAGACATGAA 592
|||||| |||||||||||| ||||||| || || || |||||||||| || ||| ||||
Sbjct 599 CCCGTTTCTTGGAGGAGTCCTTGAGATCGGCACAACCGAACATATTAAAGAGGACTTGAA 658
Query 593 TGTAATACAATGCGTGAAGACATCATTCCTCGAAGCCCCTGATCCGTACGCTACAATATT 652
|| ||||||||||||||||| | ||||| ||||| ||| || || |||||||||
Sbjct 659 CGTGATACAATGCGTGAAGACGTTGTTCCTTGAAGCTCCT---CCTTATACTACAATAT- 714
Query 653 ACCAGCAAGATCCGATTATCA 673
| | ||||||| || |||||
Sbjct 715 -CGA-CAAGATCAGACTATCA 733
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72485736235
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5