BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41330.1
Length=2420
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493845 jgi|Araly1|493845|fgenesh2_kg.7__3278__AT5G41330.1 3589 0.0
> Ahg493845 jgi|Araly1|493845|fgenesh2_kg.7__3278__AT5G41330.1
Length=2387
Score = 3589 bits (1943), Expect = 0.0
Identities = 2257/2405 (94%), Gaps = 35/2405 (1%)
Strand=Plus/Plus
Query 30 aaaaaaaaaaaaaaaaaaaGCGAAGAACGTCTTCTGATTTGCTCGTATGAATTTTCCGAC 89
||||||||||||| | ||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 1 AAAAAAAAAAAAATACAAAGCGAAGAAGGTCTTCTGATTTACTCGTATGAATTTTCCGAC 60
Query 90 GATCCCTCATGAATCGAACGTTGTCTCCATCAACGTCGGAGGCCGAATCTTTCAAACAAC 149
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 61 GATCCCTCATGAATCGAACGTTGTTTCCATCAACGTCGGAGGCCGAATCTTCCAAACAAC 120
Query 150 GAAGCAAACCTTAAGCCTAGCCGGAACCGATTCTCTCCTATCTCAACTCG-C-T-ACTGA 206
||| |||||||||| ||||||||||||||||||||| ||||||| ||||| | | |||||
Sbjct 121 GAAACAAACCTTAACCCTAGCCGGAACCGATTCTCTTCTATCTCGACTCGTCGTCACTGA 180
Query 207 GACAACTCGTTTCGTCGATCGTGATCCCGATTTGTTCTCCGTTCTTCTCTATATCCTCCG 266
| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 181 GTCAACTCGTTTCGTCGATCGAGATCCCTATTTGTTCTCCGTTCTTCTCTATATCCTCCG 240
Query 267 TACCGGAAACCTACCTGCTAGATCACGCGCCTTCGATGTTCGTGATCTCATCGATGAATC 326
||||||||| ||||||| ||||||||||||||||||||||| ||||| |||||||||||
Sbjct 241 CACCGGAAACTTACCTGCGAGATCACGCGCCTTCGATGTTCGAGATCTGATCGATGAATC 300
Query 327 TAGATACTATGGAATCGAGTCTTTCTTAATCGATTCTCTCTCGAATTCGTCGCAGTTCGA 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TAGATACTATGGAATCGAGTCTTTCTTAATCGATTCTCTCTCGAATTCGTCGCAGTTCGA 360
Query 387 GCCGTTCGATCTCCGTAGATCTAGGATTCTTCAATTGAACGGTCGAGATTCTCCGTCGAG 446
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 361 GCCGTTCGATCTCCGTAGATCTAGGATTCTTCGATTAAACGGTCGAGATTCTCCGTCGAC 420
Query 447 TATCTCACCGACTGT-AATCGGCGGAGGTCTCCACGTGGCGCACGGTAGCAAAATCACTT 505
|||||||||||| || |||||||||||| || ||||||||||||||||||||||||||||
Sbjct 421 TATCTCACCGAC-GTTAATCGGCGGAGGACTACACGTGGCGCACGGTAGCAAAATCACTT 479
Query 506 CGTTTGATTGGTCGTTGAGGCAAAAGTCGACTGTGTTGACTAATTTCTCCGCCGTGGATT 565
|||| |||||||||||||||||||| ||||| |||||||| |||||||||||||||||||
Sbjct 480 CGTTCGATTGGTCGTTGAGGCAAAAATCGACGGTGTTGACGAATTTCTCCGCCGTGGATT 539
Query 566 CGCTTCTAGAGATATCTCCGGGAGTTTTAGCTGCCGGAGCTACCGATTTCCCTGGTTTGC 625
| ||||||||||| |||||||||||||||||||||||||| || |||||||| |||||||
Sbjct 540 CTCTTCTAGAGATCTCTCCGGGAGTTTTAGCTGCCGGAGCCACTGATTTCCCAGGTTTGC 599
Query 626 AAATCATCGATCTCGATAACGGCGGATTCGTTCGTACGACTCTGAATTGGGAAAACGTTA 685
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
Sbjct 600 AAATCATCGATCTCGAAAACGGCGGATTCGTTCGTACGACTCTGAATTGGGAAAAAGT-A 658
Query 686 -CTAGGTCTAGCTCAACGGTTCAAGCCATAGGTTCTTCTCATGAGTTTTTGTTCACTAGC 744
||||||||||||||||||| ||||| ||||||||||||| ||||||| | ||| |||||
Sbjct 659 GCTAGGTCTAGCTCAACGGTACAAGCTATAGGTTCTTCTCCTGAGTTTCTATTCGCTAGC 718
Query 745 TTTGAATCTAGTAGAAGGAACTCGAATTCGATTATGGTGTATGACCTTTCTAGCTTGTTA 804
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 719 TTTGAATCTAGTAGAAGGAACTCGAATTCGATTATGGTGTATGATCTATCTAGCTTGTTA 778
Query 805 CCTGTGTCTGAGATTGATCATTGTGAGATCTATGGCGCTGATATTGATTCTGCGATTCCA 864
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 779 CCTGTGTCTGAGATTGATCATTGTGAGATTTATGGCGCTGATATTGATTCTGCGATTCCA 838
Query 865 TCGACTAAGTTGAAATGGATTCAGAGTTGTAATTTGTTGATGGTTTCTGGTTCTCATACT 924
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 839 TCGACTAAGTTGAGATGGATTCAGAGTTGTAATTTGCTGATGGTTTCTGGTTCTCATACT 898
Query 925 AGTCCTTCTGGTGTCAATGGTCACATAAGGTTTTGGGATGTTAGGTCAAGGAATATGGTT 984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 AGTCCTTCTGGTGTCAATGGTCACATAAGGTTTTGGGATGTTAGGTCAAGGAATATGGTT 958
Query 985 TGGGAGATTAAGGAGGCACAAGATTGTTTCTCTGATGTTACTGTCTCGGATAATCTCTCG 1044
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TGGGAGATTAAGGAGACACAAGATTGTTTCTCTGATGTTACTGTCTCGGATAATCTCTCG 1018
Query 1045 GCGGTGTTCAAGGTCGGTGTGACTTCAGGGGAAGTTTTCTACGCCGATTTGAGGAGTTTA 1104
|||||||| ||||||||||||||||| |||||||||| ||| |||||||||||||| |||
Sbjct 1019 GCGGTGTTTAAGGTCGGTGTGACTTCGGGGGAAGTTTCCTATGCCGATTTGAGGAGATTA 1078
Query 1105 GGAACTAAGGATCCATGGGTTTGTCTTGGGGAAGAGAAGAAGAGAAACTTGAATGAAAGA 1164
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 1079 GGAACTAAGGATCCATGGGTTTGTCTTGGGGAAGAGAAGAAGAGAAGCTTGAATGAGAGA 1138
Query 1165 AGAGGAGTTGGGTCTAAGATAGAGAGCTATGGGAATCATGTGTTTTGCAGTAGTAAAGGA 1224
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 AGAGGAGTTGGGTGTAAGATAGAGAGCTATGGGAATCATGTGTTTTGCAGTAGTAAAGGA 1198
Query 1225 AGTGGGATAGAGCTTTGGTCTGAAGTGATCACGGGTTTGGTGGGGAATGCAAGCCGGGAT 1284
||||||||||||||||||||||||||||||||||||||| | || || |||||||| |||
Sbjct 1199 AGTGGGATAGAGCTTTGGTCTGAAGTGATCACGGGTTTGCTAGGAAACGCAAGCCGAGAT 1258
Query 1285 GTATTGGAAGAGAGGGTTTTTAGGAAGAATTCGTT-GGGAAAATTAGCGGATTCAGGAGA 1343
|||| |||||||||||||||||||||||||||||| |||||| |||| ||||||||||||
Sbjct 1259 GTATCGGAAGAGAGGGTTTTTAGGAAGAATTCGTTCGGGAAA-TTAGTGGATTCAGGAGA 1317
Query 1344 AAACAAGATAACAGGATTGGCGTTTGGAGGAAATAGAATGTTTGTGACCCGAAAGGATCA 1403
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 AAACAAGATAACTGGATTGGCGTTTGGAGGAAATAGAATGTTTGTGACCCGAAAGGATCA 1377
Query 1404 GCAGTCTGTTCAGGTTTGGCAAAGTCCTAGTCGTGGAATATCTATCTAATGAGCAAGTAT 1463
|||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1378 GCAGTCTGTTGAGGTTTGGCAAAGTCCTAGTCGTGGAATATCGATTTAATGAGCAAGTAT 1437
Query 1464 TAAGCTTTGGTTCGAGGTGATCACGAGTTGCTTAAAGCCGAATCCAACAAAAACTAGTTA 1523
||| | |||||||||||||||||||||||| ||||| |||||||||| ||| |||||||
Sbjct 1438 TAAACGTTGGTTCGAGGTGATCACGAGTTGGTTAAAATCGAATCCAACTAAA-CTAGTTA 1496
Query 1524 GCGACTTACATTGTGTTAAAGAA----GAATGAATGA-TCTTAATCCCAATACTTGATGA 1578
|||||||||||||| ||| |||| |||||||||| |||| |||||| ||||||||||
Sbjct 1497 GCGACTTACATTGTCTTATAGAAAAATGAATGAATGAATCTTTATCCCATTACTTGATGA 1556
Query 1579 AGCTATTCCAACCATGAATTTCTTATCTCTGATAATCTTATAAAAAGGACTTACATCGTT 1638
|||| | ||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1557 AGCTGTCCCAACCATGAATTTCTTATTTCTGATAATCTTATAAAAAGGACTTACAT-G-- 1613
Query 1639 CGTCAGACGAGGCTGTGAAGGATGTTTGCATTCTAACGACATGACCTTATACAAGTA-C- 1696
|| | ||||| ||||| ||||||||||| |||||||||||||||| ||| |
Sbjct 1614 ----AG--G---CTGTGTAGGATATTTGCATTCTAGTGACATGACCTTATACA-GTAACC 1663
Query 1697 TGCAGAGAGAAGCAAATGACGATGCTTGGCAAAATATCAAATTGCGGAAACACCTTTCGG 1756
|||||||||||||||||||| |||||||| |||| ||||||||| ||||||||||||||
Sbjct 1664 TGCAGAGAGAAGCAAATGACCATGCTTGGGGAAATGTCAAATTGCAGAAACACCTTTCGG 1723
Query 1757 GTTCAAACGGCCTTTATCTACCAGGGCTAGTTCTGTAATCGGAGAGGCCGTTATTACAGT 1816
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1724 ATTCAAACGGCCTTTATCTACCAGAGCTAGTTCTGTAATCGGAGAGGCCGTTATTACAGT 1783
Query 1817 TGCTTACTTCAGCTTCAGGAAATCTGTTACCGGAAAATCTTATGGCTCCACCTGCCATCA 1876
|||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1784 TGCTGACTTCAACTTCGGGAAATCTGTTACCGGAAAATCTTATGGCTCCACCTGCCATCA 1843
Query 1877 TCAGACCTCCGAACATATTGTTGTCGTCTCTCTGCTGTGAAGAAGTCGCAGAATTCAGTT 1936
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1844 TCAGACCTCCGAACATATTGTTGTCGTCTCTCTGCTGTGAAGAAGTTGCAGAATTCAGTT 1903
Query 1937 GTGCTGGAAAATTATAACCACCTGCCATCAGATTAGACTGAAAAGCTGCCGGAAAACCAG 1996
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1904 GTGCTGGAAAATTATAACCACCTGCCATCAGATTAGGCTGAAAAGCTGCCGGAAAACCAG 1963
Query 1997 AAAAGTAACCATTGTTGTGCAACAGAGAATTCTCAAATCCTTGTCCTCCTGTGACTCCTG 2056
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 1964 AAAAGTAACCATTGTTGTGAAACATAGAATTCTCAAATCCTTGTCCTCCTGTGACTCCTG 2023
Query 2057 TCTGAAATTCAGAAAGATCAGGAGTCTGAGCTACTGGTTGTCTCATTTGAAAGTTGGTGT 2116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2024 TCTGAAATTCAGAAAGATCAGGAGTCTGAGCTACTGGTTGTCTCATTTGAAAGTTGGTGT 2083
Query 2117 TACTTGCTGAA-GGAGTAATCCCTTGGCTTGAAGAAGGAAACAACGAAGAAGGTACTGGA 2175
|||||||| || ||||||||||||||||||||||||| ||||||||||| |||||| |||
Sbjct 2084 TACTTGCT-AATGGAGTAATCCCTTGGCTTGAAGAAGCAAACAACGAAGGAGGTACAGGA 2142
Query 2176 AAACTCTGCAATAGTGATGATGAAGACAGTTTTGGAAACAACGAAGAATGTACCGGAAAA 2235
||||||||||| || |||| |||||||| ||||||||||||||||||| |||| ||||||
Sbjct 2143 AAACTCTGCAACAGCGATGGTGAAGACATTTTTGGAAACAACGAAGAAGGTACTGGAAAA 2202
Query 2236 CTCTGCAACGATGATGATGA---CAGTTGTGACGCAAAAGGTGTCCCAAAGTTATGATCT 2292
|||||||||||||||||||| ||||||||||||||| |||||| |||| |||||||||
Sbjct 2203 CTCTGCAACGATGATGATGAAGACAGTTGTGACGCAAAGGGTGTCACAAAATTATGATCT 2262
Query 2293 TTCTGCATTTCAGGTCCTGTTATCTCCACTATTGATGATCTGTTCTTGTTGGTATTAGCT 2352
||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||
Sbjct 2263 TTCTGCATTTCAGGTCCTGCTCTCTCCACCATTGATGATCTGTTCTTGTTGGTATTAGCT 2322
Query 2353 TCGCTTGTCTTCTTTAGTTTCTTACTCAGATTTGGAGCTTGAATGGCCAAAACAATACTT 2412
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2323 TCGCTTGTTTTCTTTAGTTTCTTAGTCAGATTTGGAGCTTGAATGGCCAAAACAATACTT 2382
Query 2413 TTCTG 2417
|||||
Sbjct 2383 TTCTG 2387
Score = 86.1 bits (46), Expect = 1e-15
Identities = 53/56 (95%), Gaps = 2/56 (4%)
Strand=Plus/Plus
Query 2152 GGAAACAACGAAGAAGGTACTGGAAAACTCTGCAAT-AGTGATGATGAAGACAGTT 2206
||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 2176 GGAAACAACGAAGAAGGTACTGGAAAACTCTGCAACGA-TGATGATGAAGACAGTT 2230
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91188046530
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5