BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41340.1
Length=953
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493844 jgi|Araly1|493844|fgenesh2_kg.7__3277__AT5G41340.1 1376 0.0
Ahg474975 jgi|Araly1|474975|fgenesh2_kg.2__105__AT1G63800.1 579 2e-164
Ahg483748 jgi|Araly1|483748|fgenesh2_kg.4__2808__AT2G46030.1 315 5e-85
> Ahg493844 jgi|Araly1|493844|fgenesh2_kg.7__3277__AT5G41340.1
Length=894
Score = 1376 bits (745), Expect = 0.0
Identities = 858/907 (95%), Gaps = 29/907 (3%)
Strand=Plus/Plus
Query 63 TTTTTCTCTCACACATTTTTCTTCATCTC-C-ACTCGAATCCGGAAGAAGAACaaaaacc 120
||||||||||||||||||||||||||||| | |||||||||||||||||| ||
Sbjct 1 TTTTTCTCTCACACATTTTTCTTCATCTCTCTACTCGAATCCGGAAGAAG------AA-- 52
Query 121 aaaaaaaaaaCCCAGAAAATCAGAGAAACATAAGCGAA-CC-GACAGAG--aaaaaaaaT 176
||||||||| | ||||||||||||||| ||||||| || | ||||| |||||||||
Sbjct 53 GAAAAAAAAA---A-AAAATCAGAGAAACACAAGCGAACCCAGGCAGAGAAAAAAAAAAT 108
Query 177 GTCTTCGCCAAGCAAACGCAGAGAAATGGATATGATGAAGCTGATGATGAGCGATTATAA 236
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 109 GTCTTCGCCGAGCAAACGCAGAGAAATGGATATGATGAAGCTGATGATGAGCGATTATAA 168
Query 237 AGTGGAAACGATCAACGATGGCATGCAAGAATTCTATGTTGAATTCAATGGTCCCAAAGA 296
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 169 AGTGGAAACGATCAACGATGGCATGCAAGAATTCTATGTTGAATTCAATGGACCCAAAGA 228
Query 297 CAGTCTCTATCAAGGAGGTGTGTGGAAGATAAGAGTTGAGCTTCCAGATGCTTATCCTTA 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 229 CAGTCTCTATCAAGGAGGTGTGTGGAAGATAAGAGTTGAGCTTCCAGATGCTTATCCTTA 288
Query 357 TAAATCTCCATCTGTTGGTTTCATTACTAAAATTTATCATCCTAATGTTGATGAACTGTC 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 TAAATCTCCATCTGTTGGTTTCATTACTAAAATTTATCATCCTAATGTTGATGAACTGTC 348
Query 417 GGGTTCTGTTTGTTTAGATGTGATTAACCAAACTTGGAGTCCTATGTTCGACCTTGTGAA 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 GGGTTCTGTTTGTTTAGATGTGATTAACCAAACTTGGAGTCCTATGTTCGACCTTGTGAA 408
Query 477 TGTGTTTGAGACATTTCTTCCTCAGCTTCTTCTGTATCCAAACCCATCAGATCCATTGAA 536
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 409 TGTGTTTGAGACATTTCTTCCTCAGCTTCTTCTTTATCCAAACCCATCAGATCCATTGAA 468
Query 537 TGGAGAAGCTGCTGCGTTAATGATGCGTGATCGTCCTGCTTATGAGCAACGAGTTAAAGA 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 TGGAGAAGCTGCTGCGTTAATGATGCGTGATCGTCCTGCTTATGAGCAACGAGTTAAAGA 528
Query 597 ATACTGTGAGAAGTATGCAAAGCCAGGGGAAGGTTCAGAAGATAAGTCTAGCGATGAAGA 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 ATACTGTGAGAAGTATGCAAAGCCAGGGGAAGGTTCAGAAGATAAGTCTAGCGATGAAGA 588
Query 657 ACTAAGTGAAGAGGAATACGGCTCAGATAATGA-G--gatgatgatgatgatgatg-T-T 711
|||||||||||| ||||||||||||||| |||| | ||||||||||||||||||| | |
Sbjct 589 ACTAAGTGAAGAAGAATACGGCTCAGATGATGAAGATGATGATGATGATGATGATGATGT 648
Query 712 -GCAATTGCTGGCAAACCAGATCCTTGAACCAGCTTTGGTAGGGGACTTGTTTTATTGTA 770
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 649 TGCAATTGCAGGCAAACCAGATCCTTGAACCTGCTTTGGTAGGGGACTTGTTTTAT-GTA 707
Query 771 TATGATCATGAAT---T-ATCTCTGCTTATAACTCAACTGTGAAATCTATTTCTCCCTTT 826
||||||||||||| | || | ||||||||||| ||||||||||||||||||||||||
Sbjct 708 TATGATCATGAATGAATTATTTATGCTTATAACTGAACTGTGAAATCTATTTCTCCCTTG 767
Query 827 GTGCTTTGTTCACCTGTTTAATTTATCGGACCGGACGTTTGTGTACATTATTAGACCGAA 886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 GTGCTTTGTTCACCTGTTTAATTTATCGGACCGGACGTTTGTGTACATTATTAGACCGAA 827
Query 887 CCGAATTGTTAGTCTTTTCAATTTCAAATAAGTCTCTCTTACCGGTTTATACCGGTTATT 946
||||||||||||||||||| ||||||||||||| || |||||||||| ||||||||||
Sbjct 828 CCGAATTGTTAGTCTTTTCGATTTCAAATAAGTGGGTCGTACCGGTTTAAACCGGTTATT 887
Query 947 GATTCGG 953
|||||||
Sbjct 888 GATTCGG 894
> Ahg474975 jgi|Araly1|474975|fgenesh2_kg.2__105__AT1G63800.1
Length=768
Score = 579 bits (313), Expect = 2e-164
Identities = 501/591 (85%), Gaps = 15/591 (3%)
Strand=Plus/Plus
Query 164 AGAGaaaaaaaaTGTCTTCGCCAAGCAAACGCAGAGAAATGGATATGATGAAGCTGATGA 223
||||| ||| ||||||||||| ||||| || |||||||||||| ||||||| |||||||
Sbjct 30 AGAGAGAAACCATGTCTTCGCCGAGCAAGCGTAGAGAAATGGATTTGATGAAACTGATGA 89
Query 224 TGAGCGATTATAAAGTGGAAACGATCAACGATGGCATGCAAGAATTCTATGTTGAATTCA 283
|||| || || || || || | |||||| |||||||||||||| |||| |||||||||||
Sbjct 90 TGAGTGACTACAAGGTTGAGATGATCAATGATGGCATGCAAGAGTTCTTTGTTGAATTCA 149
Query 284 ATGGTCCCAAAGACAGTCTCTATCAAGGAGGTGTGTGGAAGATAAGAGTTGAGCTTCCAG 343
|||| || ||||||||| | ||| | |||||||||||||||||||||||||| ||||| |
Sbjct 150 ATGGACCTAAAGACAGTATATATGAGGGAGGTGTGTGGAAGATAAGAGTTGAACTTCCTG 209
Query 344 ATGCTTATCCTTATAAATCTCCATCTGTTGGTTTCATTACTAAAATTTATCATCCTAATG 403
|||||||||||||||||||||||||||||||||||||||| ||||| || || || ||||
Sbjct 210 ATGCTTATCCTTATAAATCTCCATCTGTTGGTTTCATTACCAAAATATACCACCCGAATG 269
Query 404 TTGATGAACTGTCGGGTTCTGTTTGTTTAGATGTGATTAACCAAACTTGGAGTCCTATGT 463
| |||||| |||| |||||||| ||||||||||| |||||||| || ||||| || ||||
Sbjct 270 TCGATGAAATGTCCGGTTCTGTGTGTTTAGATGTTATTAACCAGACCTGGAGCCCGATGT 329
Query 464 TCGACCTTGTGAATGTGTTTGAGACATTTCTTCCTCAGCTTCTTCTGTATCCAAACCCAT 523
||||||| ||||||||||||||||||||||||||||| |||||||||||||| || || |
Sbjct 330 TCGACCTGGTGAATGTGTTTGAGACATTTCTTCCTCAACTTCTTCTGTATCCGAATCCGT 389
Query 524 CAGATCCATTGAATGGAGAAGCTGCTGCGTTAATGATGCGTGATCGTCCTGCTTATGAGC 583
|||||||||||||||||||||| ||||| || |||||||||||||||||| | ||||| |
Sbjct 390 CAGATCCATTGAATGGAGAAGCAGCTGCATTGATGATGCGTGATCGTCCTACCTATGAAC 449
Query 584 A-ACGAGTTAAAGAATACTGTGAGAAGTATGCAAAGCCAGGGGAAGGTT-CAGAAGATAA 641
| | |||||||||| || || ||||| || ||||||||| |||| || | | || || ||
Sbjct 450 AGA-GAGTTAAAGAGTATTGCGAGAAATACGCAAAGCCAAGGGA-GGATACTGAGGA-AA 506
Query 642 -GTCTAGCGATGAAGAACTAAGTGAAGAGGAATACGGCTCAGATAATGAGgatgatgatg 700
|||||| ||||| ||| | |||||||| ||||| | |||||| | | ||||||||
Sbjct 507 TGTCTAGTGATGATGAAATGAGTGAAGACGAATATGCCTCAGAC---G-G--TGATGATG 560
Query 701 atgatgatgTTGCAATTGCTGGCAAACCAGATCCTTGAA-CCAGCTTTGGT 750
| |||||||||||||| || || |||| ||||||| || || || |||||
Sbjct 561 AAGATGATGTTGCAATCGCAGGTAAACTTGATCCTT-AATCC-GCATTGGT 609
> Ahg483748 jgi|Araly1|483748|fgenesh2_kg.4__2808__AT2G46030.1
Length=836
Score = 315 bits (170), Expect = 5e-85
Identities = 365/456 (80%), Gaps = 26/456 (6%)
Strand=Plus/Plus
Query 175 ATGTCTTCGCCAAGCAAACG-CAGAGAAATGGATATGATGAAGCTGATGATGAGCGATTA 233
||| ||||||| |||||||| | |||| |||||||||||||| |||||||||| |||||
Sbjct 67 ATGGCTTCGCCGAGCAAACGTC-GAGAGATGGATATGATGAAATTGATGATGAGTGATTA 125
Query 234 TAAAGTGGAAACGATCAACGATGGCATGCAAGA-ATTCTATGTTGA-ATTCAATGGTCCC 291
|| ||||| || |||||||| | ||||| | ||||||| | | |||| |||| |||
Sbjct 126 CAAGGTGGATACAATCAACGACGATTTGCAA-ATGTTCTATG-TCACATTCCATGGACCC 183
Query 292 AAAGACAGTCTCTATCAAGGAGGTGTGTGGAAGA-TAAGAGTTGAGCTTCCAGATGCTTA 350
| ||||| || ||||| |||||||| ||||||| ||| ||| || ||||| || |||||
Sbjct 184 ACTGACAGCCTTTATCAGGGAGGTGTATGGAAGATTAA-AGTCGAACTTCCCGAAGCTTA 242
Query 351 TCCTTATAAATCTCCATCTGTTGG-TTTCATT-ACTAAAATTTATCATCCTAATGTTGAT 408
||| || |||||||||||||| || ||| || || || |||||||| |||||||| |||
Sbjct 243 TCCATACAAATCTCCATCTGTAGGATTT-GTTAAC-AAGATTTATCACCCTAATGTCGAT 300
Query 409 GAA-CTGTCGGGTTCTGTTTGTTTAGATGTGATTAACCAAACTTGGAGTCCTATGTTCGA 467
||| || || ||| | ||||| |||||||| || ||||| || ||||| || ||||| ||
Sbjct 301 GAATCT-TCTGGTGCAGTTTGCTTAGATGTTATAAACCAGACATGGAGCCCAATGTTTGA 359
Query 468 CCTTGTGAATGTGTTT-GAGA-CATTTCTTCCTCAGCTTCTTCTGTATCCAAACCCATCA 525
||| | ||||| ||| || | | || ||||| || || |||||||||||||||||||||
Sbjct 360 TCTTATAAATGT-TTTCGA-ATCCTTCCTTCCGCAACTGCTTCTGTATCCAAACCCATCA 417
Query 526 GATCCATTGAATGGAGAAGCTGCTGCGT-TAATGATGCGTGATCGTC-CTGCTTATGAGC 583
|||||||| ||||||||||||||| | | | ||||||| || || | | || |||||||
Sbjct 418 GATCCATTTAATGGAGAAGCTGCTTC-TCTGTTGATGCGAGACCG-CGCAGCCTATGAGC 475
Query 584 --AACGAGTTAAAGAATACTGTGAGAAGTATGCAAA 617
|| ||| |||||||| |||||||| ||||||||
Sbjct 476 TGAA--AGTGAAAGAATATTGTGAGAAATATGCAAA 509
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35378066976
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5