BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41350.1
Length=1391
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493843 jgi|Araly1|493843|fgenesh2_kg.7__3276__AT5G41350.1 1864 0.0
> Ahg493843 jgi|Araly1|493843|fgenesh2_kg.7__3276__AT5G41350.1
Length=1347
Score = 1864 bits (1009), Expect = 0.0
Identities = 1251/1358 (92%), Gaps = 55/1358 (4%)
Strand=Plus/Plus
Query 2 TAATTTCTTAGGAAAGTCATTTTGATAGAGCGCACGATAAACACAGCACCGcaaaaagca 61
|||||||| ||||||||||||||||||||||||||||| || |||||||||| |||||||
Sbjct 1 TAATTTCTAAGGAAAGTCATTTTGATAGAGCGCACGAT-AA-ACAGCACCGC-AAAAGCA 57
Query 62 cagaagcagagaaagacgaagacaaaac---aa-aaaaagcttcccccaagaacaaaaag 117
||||||||||||| |||||||||||||| || |||||||||| ||| | | |||||
Sbjct 58 CAGAAGCAGAGAAGGACGAAGACAAAACAAAAACAAAAAGCTTCTCCC--G-A-GAAAAG 113
Query 118 TTAGCATAGATGAAGAGTCTTCGGGTTTTGTAGTTTTTGT-AAAACAGaaaaaaaaaaaa 176
|||||||||||||||||||||||| |||||||||| |||| | || | || | |||||||
Sbjct 114 TTAGCATAGATGAAGAGTCTTCGGTTTTTGTAGTTGTTGTGATAA-A-AACAGAAAAAAA 171
Query 177 aGAGAAGAAGAGATGGGAGGTTGCTGTTGTTGTTCTTCTTCACGAAGAGCTGATGTAGAT 236
| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 172 A-A-AAGAAGAGATGGGAGGTTGCTGTTGTTGTTCTTCTTCACAAAGAGCTGATGTAGAT 229
Query 237 AATGGACCTGCGTACTACTACTACCCAAGGGCAACAGAAGAGCGTGTGCCTTTATCTTCC 296
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 230 AACGGACCTGCGTACTACTACTACCCAAGGGCAACAGAAGAGCGTGTGCCTTTGTCTTCC 289
Query 297 GCTCATAACAGGACTTCCTCTGCAATCTCTACTGGTGTTGTAGTAGTAGACACAAACTTA 356
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 GCTCATAATAGGACTTCCTCTGCAATCTCTACTGGTGTTGTAGTAGTAGACACAAACTTA 349
Query 357 GAGACATCATCTCCTGATGCTTATATACCACCGCCACTGCCTACCCCTTTCGATGTGCCT 416
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 350 GAGACATCATCTCCTGATGCTTATATACCACCGCCACTGCCTATCCCTTTCGATGTGGCT 409
Query 417 ATAGGGATTCCTCAAACACCAGCTAGTGGTGAAGAGGCTACTTGTGTTGATATAAGAGAG 476
|||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 410 ATAGGGGTTCCTCAAACACCAGCCAGTGGTGAAGAGGCTACTTGTGTTGATATTAGAGAG 469
Query 477 GTTTCGGTGGACTCTGCTAATACCGAGTCTGCTCAAGAAACAGTTGATGGTATTACTCTC 536
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 470 GTTTCAGTGGACTCTGCTAATACCGAGTCTTCTCAAGAAACAGTTGATGGTATTACTCTC 529
Query 537 GGGGTTCCAACTACATGCTCACATAAAGAGACAGATAGCAAAATCCAAACAGAGATTGAT 596
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 530 GGGGTTCCAACTACATGCTCACATAAAGAGACAGATTGCAAAATCCAAACAGAGATTGAT 589
Query 597 CTTGAATCTACTGAAGAAATAGACCCGAAGCTATCAAAAGCTGTTTTTATACCAATAGAG 656
|||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||
Sbjct 590 CTTGAATCTACTGAAGAAATAGACCCAAAGCTATCAAAAGCCGTCTTTATACCAATAGAG 649
Query 657 GAAGAGGAGGATTGTCCCATATGTTTGGAAGAATATGATATCGAGAACCCGAAACTTGTA 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 GAAGAGGAGGATTGTCCCATATGTTTGGAAGAATATGATATCGAGAACCCGAAACTTGTA 709
Query 717 GCCAAATGTGATCACCATTTTCACCTTGCATGCATTCTAGAATGGATGGAGAGAAGTGAA 776
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 710 GCCAAATGTGATCACCATTTTCACCTTGCATGCATTCTAGAGTGGATGGAGAGAAGTGAA 769
Query 777 ACCTGCCCCGTCTGCAACAAGGAAATGGTATTTGACTCTACTCTTGACTAGCAACCCGCA 836
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 770 ACCTGCCCCGTCTGCAACAAGGAAATGGTATTTGACTCTCCTCTCGACTAGCAACCCGCA 829
Query 837 AATGCCGCATCTTAGAAGGCTCAATTCTCTCTGTATCagaagaaagaaattggagaacaa 896
| | | ||||||||||||||||||||||||||||||| ||| ||||||||| |||| ||
Sbjct 830 AGTACTGCATCTTAGAAGGCTCAATTCTCTCTGTATCCGAACAAAGAAATTAGAGAG-AA 888
Query 897 g-agaa-aaacttaaaa-agaaa-aaa-TGGGTAAGAATACACTAATAGCTGAT-CACAA 950
| |||| |||||||||| | ||| ||| ||| |||||||||||||||||||||| |||||
Sbjct 889 GGAGAAGAAACTTAAAAGAAAAAGAAAATGG-TAAGAATACACTAATAGCTGATTCACAA 947
Query 951 AGTTGGATTTACGAAACATGTCAGTGTTGATATACATATGTTTGTGTACAGACGTTTCAA 1010
|| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 948 AGCTGAATTTACGAAACATGTGAGTGTTGATATACATATGTTTGTGTACAGACGTTTCAA 1007
Query 1011 ATCGTCTACaaaaaaaCGGAGATTAAGAATTAGAGTTTGTGCTTTAGATTCACTTCTGTG 1070
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1008 GTCGTCTACAAAAAAT-GGAGTTTAAGAATTAGAGTTTGTGCTTTAGATTCACTTCTGTG 1066
Query 1071 AATAAAAAACGAGACAAAACTGATAATTTTTCTTCTAGATGTTTTAATTTTGGT------ 1124
||||||||| | | ||| ||||||||||||||| |||||||
Sbjct 1067 AATAAAAAA-----------T--T--TTT--CTTCTAGATGTTTTA-TTTTGGTTTTGTT 1108
Query 1125 AATTCTTGTTTATAGGTTATTTTAGGAGTGTTTTAAAGCTGGGGTTTCAATTTGGGTTTG 1184
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 1109 AATTCTTGTTTATAGGTTCTTTTAGGAGTGTTTTTAAGCTGGGGTTTCAATTTGGGTTTG 1168
Query 1185 ATTCAGTTTTTTCTTGAGTTTAAGAAAAATATTAATCAAACTGAAATTGAGAGTTTGTTA 1244
|||||||||||||||| ||||||||||||| ||||||||||||||||||| ||| |||
Sbjct 1169 ATTCAGTTTTTTCTTGGGTTTAAGAAAAATGGTAATCAAACTGAAATTGAG--TTTATTA 1226
Query 1245 TGTATGGATTGGGTTTATTACGGTTCG-ATTTTAGTTTGGTTTAGTGCTTATTTATTTTC 1303
|||||| |||||||||||||||||||| |||| |||||||||||||| ||||||||||||
Sbjct 1227 TGTATGCATTGGGTTTATTACGGTTCGGATTT-AGTTTGGTTTAGTGTTTATTTATTTTC 1285
Query 1304 TTTATGTTGTTCTGTGATATGTAATATGAAAATTGTTT 1341
||| | ||||| |||||| ||||||||||||||||||
Sbjct 1286 TTTTTATTGTTATGTGAT--GTAATATGAAAATTGTTT 1321
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51993184425
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5