BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G41380.1 Length=1954 Score E Sequences producing significant alignments: (Bits) Value Ahg493840 jgi|Araly1|493840|fgenesh2_kg.7__3273__AT5G41380.1 1962 0.0 Ahg474973 jgi|Araly1|474973|fgenesh2_kg.2__103__AT1G63820.1 97.1 4e-19 > Ahg493840 jgi|Araly1|493840|fgenesh2_kg.7__3273__AT5G41380.1 Length=1675 Score = 1962 bits (1062), Expect = 0.0 Identities = 1489/1682 (89%), Gaps = 82/1682 (5%) Strand=Plus/Plus Query 1 TTCACCTGTCATGTCTTGGTTCTGAAACAGAGAAA--CTCACAAACCAAAGAAAAAACTT 58 ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| Sbjct 1 TTCACCTGTCATGTCTTGGTTCTGAAACAGAGAAACTCTCACAAACCAAAGAAGAAA--- 57 Query 59 TTGTGGAAATCttttttactttttgccatttttGGTAAAACAGAAATTCACATCACGAGA 118 |||||||||||||||||||||||||||||||||||| ||| |||||||| ||| Sbjct 58 ------AAATCTTTTTTACTTTTTGCCATTTTTGGTAAAACA-AAA-ACACATCACTAGA 109 Query 119 GTGTTACTACAGAGA-CAGAACATAAACTGAttttttttttAC-T-CATCACTTAAAAGA 175 || | | | | | | | || | | ||||||||||| | |||||| || | Sbjct 110 -----AC-ATA-A-ACCGGGA-AT--TTTTA-TTTTTTTTTACTTGTTTCACTT-CAA-A 155 Query 176 AAAAATGGATTCTTCTACAGAT-TTCTATATCTTTGATGGTTCGTCTTCATCTTCTTCCT 234 |||||||| |||| || ||||| || ||||||||||||||||| |||||||||||||| | Sbjct 156 AAAAATGGCTTCTGCTTCAGATCTT-TATATCTTTGATGGTTCTTCTTCATCTTCTTCTT 214 Query 235 CAGTGTTCAGAAATTCGAGTCCAGATATGTTTTCTTCAGACACAACAACAACTACAGATT 294 || | ||| ||||||| |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 215 CAATATTCCGAAATTCTAGTCCAGAAATGTTTTCTTCAGACACAACAACAACTACTGATT 274 Query 295 TGTTCTGCAACAATGAACTTTACTCTGTTGAAGAATCACTCAACATTTTTGACCATTTTA 354 ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 275 TGTTCTGTAACAATGAACTTTACTCTGTTGATGAATCACTCAACATTTTTGACCATTTTA 334 Query 355 CCCCTCAACACATTCTCTCTTCATCACCTCCAAGTGATCTTCTCGGAACCCTAAGTCTCT 414 |||||||| |||||||||||||||| ||||||||||||||||| |||||||||| ||||| Sbjct 335 CCCCTCAAAACATTCTCTCTTCATCTCCTCCAAGTGATCTTCTTGGAACCCTAACTCTCT 394 Query 415 CTCAGCATATTCCCACCGGATTATATCCAAATTTCTCAGATTTCCAAATCTCCGACGCCG 474 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 395 CTCAGCATATTCCCACCGGATTGTATCCAAATTTCTCAGATTTCCAAATCTCCGACGCCG 454 Query 475 TCAAAACAGAGAAGTTCTTCGACGGTCATAATCAGGCGGCAACAATGGCACGAAGCTACA 534 ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 455 TCAAAACAGAGAAGTTCTTCGACGGTCATAATCAGACGGCATCAATGGCACGAAGCTACA 514 Query 535 GTACCATAGAGAATTCAGGGAGATATATGCAGAGAAGCTTTAGCAGCAATTCGGTCGAGG 594 || ||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||| Sbjct 515 GTGCCATAGAGAATGCTGGGAGATATATGCAGAGAAGCTTTAGCAGCAATTCGGTCCAGG 574 Query 595 GGAAAC-AAACTCAGGTTCCGTTCAACATTCCGATGATGGATTCTTCAAACCTTAGTTAC 653 |||||| |||| |||||||||||||||||||||||||||||||||||||| |||| |||| Sbjct 575 GGAAACCAAAC-CAGGTTCCGTTCAACATTCCGATGATGGATTCTTCAAATCTTAATTAC 633 Query 654 AATAACTTGAGCTCCCCGGAAAATGCTTTCTTTTCCAGTCAGATGCGACGTGTCTACAGC 713 |||||||||||||| ||||||||||||||||| ||| ||||||||||||| ||||||||| Sbjct 634 AATAACTTGAGCTCGCCGGAAAATGCTTTCTTGTCCGGTCAGATGCGACGCGTCTACAGC 693 Query 714 ACCGGAGATTTGCAGAATAATATGGAAATGCAGAGATCGTCTGAAAACTCAACGATGCCG 773 ||||||||||||||||| ||| | |||||||| ||||||| || ||||||||| ||||| Sbjct 694 ACCGGAGATTTGCAGAACAATTTCCAAATGCAGCGATCGTCGGAGAACTCAACGGTGCCG 753 Query 774 TTTTCAGAGGAACAGAACTTCAAGGTGGGACGTTACAGTGCAGAAGAACGTAAAGAGAAA 833 ||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 754 TTTTCCGAGGAACAAAACTTCAAGGTTGGACGTTACAGTGCAGAAGAACGTAAAGAGAAA 813 Query 834 ATATCAAAGTACAGAGCTAAACGAAACCAGAGAAACTTTACCAAAACTATTAAGTATGCA 893 || |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| Sbjct 814 ATCTCAAAGTACAGAGCTAAACGAAACCAGAGAAACTTTACTAAAACTATCAAGTATGCA 873 Query 894 TGCCGGAAAACATTGGCGGACAGTAGACCTCGAATACGTGGTAGATTTGCACGCAATGAC 953 ||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||| Sbjct 874 TGCCGGAAAACATTGGCCGACAGTAGACCTCGAATACGCGGTAGATTCGCACGCAATGAT 933 Query 954 GAAGTTGTAGAAATCCCCAACATTGAAGATGACGACTCCGAGCTTTGGAAATTGGATGGG 1013 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 934 GAAGTTGTAGAAATCCCCAACATTGAAGATGACGACTCCGAGCTTTGGAAATTGGATGAG 993 Query 1014 CTCCATGAGAAAGAGGAAGCTTCTGTGAGCAGCTTTGTGGTGCAACAACCTCTCTTGCAC 1073 || ||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||| Sbjct 994 CTGCATGAGAAAGAGGAAGCTTTTGTGAGCAGCTTTGTGGTGCAACAGCCTCTTTTGCAA 1053 Query 1074 TAC--A-CAACTTCCTCTTCCTTTTTCTGGTGAAAGACT-CTTAAGACGAAG-ATATTTT 1128 ||| | ||||||| ||||||||||||||||||| || | ||| | ||| ||| Sbjct 1054 TACTCAACAACTTCTTCTTCCTTTTTCTGGTGAAGGAAGACG-AAGG-GTTCTATAGTTT 1111 Query 1129 TTATTTTCTTTGAAAGAAAATATCATTCTAGTTGGTCACTAATTGTATTATATATTGCAT 1188 | ||||||||| ||||||| ||| |||||||||| ||| |||||||||| |||||||||| Sbjct 1112 TAATTTTCTTTAAAAGAAATTATAATTCTAGTTGATCATTAATTGTATTGTATATTGCAT 1171 Query 1189 CAAAACAATAACAATAAAACAGATTTATCA-AT-T-TT--AGAAGAATGTAAATTTTAAT 1243 ||||||||||||||||||| || | || || | || |||||||||||||||||||| Sbjct 1172 CAAAACAATAACAATAAAAGT-ATAAAACAGATATATTTTAGAAGAATGTAAATTTTAAT 1230 Query 1244 AAATTACACTGTATTG-TTTTTGGTTATTTATTTTTCTGTATTGAAAACGACTTAACAAT 1302 ||||||| |||||| ||||||||||||| || |||||||||||| ||||| || | Sbjct 1231 AAATTAC--TGTATTTATTTTTGGTTATTTGTT---CTGTATTGAAAATGACTTGTCAGT 1285 Query 1303 TGTCTTTACCTATTTTGTGTGAGTG---AA-TTTAATAATTTAATTTCAAATACTTGACC 1358 ||||||||||| |||| |||||||| || ||||||||||||||||||||| ||||||| Sbjct 1286 TGTCTTTACCTGTTTTATGTGAGTGTTCAAATTTAATAATTTAATTTCAAATGCTTGACC 1345 Query 1359 CGGATATAAGATTCTTT-ATATGATGTCAATTTTACAAGAATTTTGATTA------GTGG 1411 ||||| |||||||||| ||||||||||||||||| | ||||||| |||| |||| Sbjct 1346 TGGATAGAAGATTCTTTTATATGATGTCAATTTTATAGGAATTTTAATTATAATTAGTGG 1405 Query 1412 ACTAAAAATTCGATTTTTGATGCTCTTTATCATGAAAATATATAGTATTATTTAATTCTC 1471 ||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| Sbjct 1406 ACTGAAAATTCGATTTTTGATGCACTTTATCATGAAAATATAT--TATTATTTAATTCTC 1463 Query 1472 CCAACCATAGAGGATCAAGATCCTCTCTCTGATCAGTGATCATGTTATTAGTGTACGAAA 1531 |||||||||||||||| ||||||||| | || || ||||||| |||||||||| Sbjct 1464 CCAACCATAGAGGATCGAGATCCTCT-T-TG----GT---CATGTTA---GTGTACGAAA 1511 Query 1532 AGTTTAGGGAAATTATTACATTT-ACCTAAAGTCAAATGACCCACTGAATATACAAATCG 1590 || | |||||| ||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 1512 AGCTGAGGGAA-TTATTACATTTTACCTAAAGTCAAATGACCCACTGAATATACAACTCG 1570 Query 1591 ACATCAAATTTCTTGTGGAGAAAAAAGTTTGCTCACAAACCCTAGTTGATTTATGTTTTC 1650 |||||||||||||| ||||||||||||||||| ||||||||||| |||||||| ||||| Sbjct 1571 ACATCAAATTTCTTCTGGAGAAAAAAGTTTGC--ACAAACCCTAGCTGATTTATTTTTTC 1628 Query 1651 AT 1652 || Sbjct 1629 AT 1630 > Ahg474973 jgi|Araly1|474973|fgenesh2_kg.2__103__AT1G63820.1 Length=1285 Score = 97.1 bits (52), Expect = 4e-19 Identities = 93/111 (84%), Gaps = 9/111 (8%) Strand=Plus/Plus Query 201 TATATCTTTGATGGTTCGTCTTCATCTTCTTCCTCAGTGTT--CAGAAATTC-GAGTCCA 257 |||||||||||||| |||||| |||||||||||| | || || | | | || ||| Sbjct 313 TATATCTTTGATGG---GTCTTCTTCTTCTTCCTCAAT-TTGCCA-CAGTACTGA-TCCT 366 Query 258 GATATGTTTTCTTCAGACACAACAACAACTACAGATTTGTTCTGCAACAAT 308 ||||||||||||||||||||||||||||| |||||| | |||||||||||| Sbjct 367 GATATGTTTTCTTCAGACACAACAACAACAACAGATCTCTTCTGCAACAAT 417 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73437992360 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5