BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41380.1
Length=1954
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493840 jgi|Araly1|493840|fgenesh2_kg.7__3273__AT5G41380.1 1962 0.0
Ahg474973 jgi|Araly1|474973|fgenesh2_kg.2__103__AT1G63820.1 97.1 4e-19
> Ahg493840 jgi|Araly1|493840|fgenesh2_kg.7__3273__AT5G41380.1
Length=1675
Score = 1962 bits (1062), Expect = 0.0
Identities = 1489/1682 (89%), Gaps = 82/1682 (5%)
Strand=Plus/Plus
Query 1 TTCACCTGTCATGTCTTGGTTCTGAAACAGAGAAA--CTCACAAACCAAAGAAAAAACTT 58
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 1 TTCACCTGTCATGTCTTGGTTCTGAAACAGAGAAACTCTCACAAACCAAAGAAGAAA--- 57
Query 59 TTGTGGAAATCttttttactttttgccatttttGGTAAAACAGAAATTCACATCACGAGA 118
|||||||||||||||||||||||||||||||||||| ||| |||||||| |||
Sbjct 58 ------AAATCTTTTTTACTTTTTGCCATTTTTGGTAAAACA-AAA-ACACATCACTAGA 109
Query 119 GTGTTACTACAGAGA-CAGAACATAAACTGAttttttttttAC-T-CATCACTTAAAAGA 175
|| | | | | | | | || | | ||||||||||| | |||||| || |
Sbjct 110 -----AC-ATA-A-ACCGGGA-AT--TTTTA-TTTTTTTTTACTTGTTTCACTT-CAA-A 155
Query 176 AAAAATGGATTCTTCTACAGAT-TTCTATATCTTTGATGGTTCGTCTTCATCTTCTTCCT 234
|||||||| |||| || ||||| || ||||||||||||||||| |||||||||||||| |
Sbjct 156 AAAAATGGCTTCTGCTTCAGATCTT-TATATCTTTGATGGTTCTTCTTCATCTTCTTCTT 214
Query 235 CAGTGTTCAGAAATTCGAGTCCAGATATGTTTTCTTCAGACACAACAACAACTACAGATT 294
|| | ||| ||||||| |||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 215 CAATATTCCGAAATTCTAGTCCAGAAATGTTTTCTTCAGACACAACAACAACTACTGATT 274
Query 295 TGTTCTGCAACAATGAACTTTACTCTGTTGAAGAATCACTCAACATTTTTGACCATTTTA 354
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 275 TGTTCTGTAACAATGAACTTTACTCTGTTGATGAATCACTCAACATTTTTGACCATTTTA 334
Query 355 CCCCTCAACACATTCTCTCTTCATCACCTCCAAGTGATCTTCTCGGAACCCTAAGTCTCT 414
|||||||| |||||||||||||||| ||||||||||||||||| |||||||||| |||||
Sbjct 335 CCCCTCAAAACATTCTCTCTTCATCTCCTCCAAGTGATCTTCTTGGAACCCTAACTCTCT 394
Query 415 CTCAGCATATTCCCACCGGATTATATCCAAATTTCTCAGATTTCCAAATCTCCGACGCCG 474
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 395 CTCAGCATATTCCCACCGGATTGTATCCAAATTTCTCAGATTTCCAAATCTCCGACGCCG 454
Query 475 TCAAAACAGAGAAGTTCTTCGACGGTCATAATCAGGCGGCAACAATGGCACGAAGCTACA 534
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 455 TCAAAACAGAGAAGTTCTTCGACGGTCATAATCAGACGGCATCAATGGCACGAAGCTACA 514
Query 535 GTACCATAGAGAATTCAGGGAGATATATGCAGAGAAGCTTTAGCAGCAATTCGGTCGAGG 594
|| ||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 515 GTGCCATAGAGAATGCTGGGAGATATATGCAGAGAAGCTTTAGCAGCAATTCGGTCCAGG 574
Query 595 GGAAAC-AAACTCAGGTTCCGTTCAACATTCCGATGATGGATTCTTCAAACCTTAGTTAC 653
|||||| |||| |||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 575 GGAAACCAAAC-CAGGTTCCGTTCAACATTCCGATGATGGATTCTTCAAATCTTAATTAC 633
Query 654 AATAACTTGAGCTCCCCGGAAAATGCTTTCTTTTCCAGTCAGATGCGACGTGTCTACAGC 713
|||||||||||||| ||||||||||||||||| ||| ||||||||||||| |||||||||
Sbjct 634 AATAACTTGAGCTCGCCGGAAAATGCTTTCTTGTCCGGTCAGATGCGACGCGTCTACAGC 693
Query 714 ACCGGAGATTTGCAGAATAATATGGAAATGCAGAGATCGTCTGAAAACTCAACGATGCCG 773
||||||||||||||||| ||| | |||||||| ||||||| || ||||||||| |||||
Sbjct 694 ACCGGAGATTTGCAGAACAATTTCCAAATGCAGCGATCGTCGGAGAACTCAACGGTGCCG 753
Query 774 TTTTCAGAGGAACAGAACTTCAAGGTGGGACGTTACAGTGCAGAAGAACGTAAAGAGAAA 833
||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 754 TTTTCCGAGGAACAAAACTTCAAGGTTGGACGTTACAGTGCAGAAGAACGTAAAGAGAAA 813
Query 834 ATATCAAAGTACAGAGCTAAACGAAACCAGAGAAACTTTACCAAAACTATTAAGTATGCA 893
|| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 814 ATCTCAAAGTACAGAGCTAAACGAAACCAGAGAAACTTTACTAAAACTATCAAGTATGCA 873
Query 894 TGCCGGAAAACATTGGCGGACAGTAGACCTCGAATACGTGGTAGATTTGCACGCAATGAC 953
||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||
Sbjct 874 TGCCGGAAAACATTGGCCGACAGTAGACCTCGAATACGCGGTAGATTCGCACGCAATGAT 933
Query 954 GAAGTTGTAGAAATCCCCAACATTGAAGATGACGACTCCGAGCTTTGGAAATTGGATGGG 1013
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 934 GAAGTTGTAGAAATCCCCAACATTGAAGATGACGACTCCGAGCTTTGGAAATTGGATGAG 993
Query 1014 CTCCATGAGAAAGAGGAAGCTTCTGTGAGCAGCTTTGTGGTGCAACAACCTCTCTTGCAC 1073
|| ||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||
Sbjct 994 CTGCATGAGAAAGAGGAAGCTTTTGTGAGCAGCTTTGTGGTGCAACAGCCTCTTTTGCAA 1053
Query 1074 TAC--A-CAACTTCCTCTTCCTTTTTCTGGTGAAAGACT-CTTAAGACGAAG-ATATTTT 1128
||| | ||||||| ||||||||||||||||||| || | ||| | ||| |||
Sbjct 1054 TACTCAACAACTTCTTCTTCCTTTTTCTGGTGAAGGAAGACG-AAGG-GTTCTATAGTTT 1111
Query 1129 TTATTTTCTTTGAAAGAAAATATCATTCTAGTTGGTCACTAATTGTATTATATATTGCAT 1188
| ||||||||| ||||||| ||| |||||||||| ||| |||||||||| ||||||||||
Sbjct 1112 TAATTTTCTTTAAAAGAAATTATAATTCTAGTTGATCATTAATTGTATTGTATATTGCAT 1171
Query 1189 CAAAACAATAACAATAAAACAGATTTATCA-AT-T-TT--AGAAGAATGTAAATTTTAAT 1243
||||||||||||||||||| || | || || | || ||||||||||||||||||||
Sbjct 1172 CAAAACAATAACAATAAAAGT-ATAAAACAGATATATTTTAGAAGAATGTAAATTTTAAT 1230
Query 1244 AAATTACACTGTATTG-TTTTTGGTTATTTATTTTTCTGTATTGAAAACGACTTAACAAT 1302
||||||| |||||| ||||||||||||| || |||||||||||| ||||| || |
Sbjct 1231 AAATTAC--TGTATTTATTTTTGGTTATTTGTT---CTGTATTGAAAATGACTTGTCAGT 1285
Query 1303 TGTCTTTACCTATTTTGTGTGAGTG---AA-TTTAATAATTTAATTTCAAATACTTGACC 1358
||||||||||| |||| |||||||| || ||||||||||||||||||||| |||||||
Sbjct 1286 TGTCTTTACCTGTTTTATGTGAGTGTTCAAATTTAATAATTTAATTTCAAATGCTTGACC 1345
Query 1359 CGGATATAAGATTCTTT-ATATGATGTCAATTTTACAAGAATTTTGATTA------GTGG 1411
||||| |||||||||| ||||||||||||||||| | ||||||| |||| ||||
Sbjct 1346 TGGATAGAAGATTCTTTTATATGATGTCAATTTTATAGGAATTTTAATTATAATTAGTGG 1405
Query 1412 ACTAAAAATTCGATTTTTGATGCTCTTTATCATGAAAATATATAGTATTATTTAATTCTC 1471
||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 1406 ACTGAAAATTCGATTTTTGATGCACTTTATCATGAAAATATAT--TATTATTTAATTCTC 1463
Query 1472 CCAACCATAGAGGATCAAGATCCTCTCTCTGATCAGTGATCATGTTATTAGTGTACGAAA 1531
|||||||||||||||| ||||||||| | || || ||||||| ||||||||||
Sbjct 1464 CCAACCATAGAGGATCGAGATCCTCT-T-TG----GT---CATGTTA---GTGTACGAAA 1511
Query 1532 AGTTTAGGGAAATTATTACATTT-ACCTAAAGTCAAATGACCCACTGAATATACAAATCG 1590
|| | |||||| ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1512 AGCTGAGGGAA-TTATTACATTTTACCTAAAGTCAAATGACCCACTGAATATACAACTCG 1570
Query 1591 ACATCAAATTTCTTGTGGAGAAAAAAGTTTGCTCACAAACCCTAGTTGATTTATGTTTTC 1650
|||||||||||||| ||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct 1571 ACATCAAATTTCTTCTGGAGAAAAAAGTTTGC--ACAAACCCTAGCTGATTTATTTTTTC 1628
Query 1651 AT 1652
||
Sbjct 1629 AT 1630
> Ahg474973 jgi|Araly1|474973|fgenesh2_kg.2__103__AT1G63820.1
Length=1285
Score = 97.1 bits (52), Expect = 4e-19
Identities = 93/111 (84%), Gaps = 9/111 (8%)
Strand=Plus/Plus
Query 201 TATATCTTTGATGGTTCGTCTTCATCTTCTTCCTCAGTGTT--CAGAAATTC-GAGTCCA 257
|||||||||||||| |||||| |||||||||||| | || || | | | || |||
Sbjct 313 TATATCTTTGATGG---GTCTTCTTCTTCTTCCTCAAT-TTGCCA-CAGTACTGA-TCCT 366
Query 258 GATATGTTTTCTTCAGACACAACAACAACTACAGATTTGTTCTGCAACAAT 308
||||||||||||||||||||||||||||| |||||| | ||||||||||||
Sbjct 367 GATATGTTTTCTTCAGACACAACAACAACAACAGATCTCTTCTGCAACAAT 417
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73437992360
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5