BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G41390.1 Length=1298 Score E Sequences producing significant alignments: (Bits) Value Ahg330382 jgi|Araly1|330382|fgenesh1_pm.C_scaffold_7002609 1269 0.0 Ahg924569 jgi|Araly1|924569|scaffold_200130.1 638 0.0 > Ahg330382 jgi|Araly1|330382|fgenesh1_pm.C_scaffold_7002609 Length=783 Score = 1269 bits (687), Expect = 0.0 Identities = 733/756 (97%), Gaps = 0/756 (0%) Strand=Plus/Plus Query 274 ATGGCGCGTTCGCAGGATAAGCTTGATAAGATGCAACTCCGGCAAAGTTACCGGAATTTA 333 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCGGGTTCGCAGGATAAGCTTGATAAGATGCAACTCCGGCAAAGTTACCGGAATTTA 60 Query 334 TGGCACTCCGATCTCATGGGCACCGTCTCGGCGGATACTCCATATTGTTTCTTCTCGTGT 393 |||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||| Sbjct 61 TGGCACTCCGATCTCATGAGCACCGTCTCGGCCGATACTCCTTATTGTTTCTTCTCGTGT 120 Query 394 TTGTGTGGACCTTGCGTTTCATACTTACTTCGGAAGAGAGCACTTTATAATGACATGTCA 453 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 121 TTGTGTGGACCTTGCGTTTCATACTTACTTCGGAAAAGAGCACTTTACAATGACATGTCA 180 Query 454 AGGTACACTTGTTGTGGTGGTTACATGCCTTGTAGTGGTAAGTGTGGAGAAAGCAAATGC 513 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 AGGTACACTTGTTGTGGTGGTTACATGCCTTGTAGTGGTAAGTGTGGAGAAAGCAAATGC 240 Query 514 CCTCAATTTTGTCTTGCCACCGAGGTGTGTCTCTGTTTCGGGAACTCTGTGGCATCTACT 573 || ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 241 CCGCAATTTTGTCTTGCCACTGAGGTGTGTCTCTGTTTCGGGAATTCTGTGGCATCTACT 300 Query 574 CGTTTTATGTTGCAAGATGAATTCAACATCCATACAACAAAATGCGACAATTGCATAATT 633 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 CGTTTTATGCTGCAAGATGAATTCAACATCCATACAACAAAATGCGACAATTGCATAATT 360 Query 634 GGATTTATGTTCTGCCTCAACCAAATCGCTTGCATTTTCTCTCTTGTCGCTTGCATTGTT 693 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 GGATTTATGTTCTGCCTCAACCAAATCGCTTGCATTTTCTCTCTTGTCGCTTGCATTGTA 420 Query 694 GGAAGTGATGAACTCTCTGAAGCGTCTCAGCTTCTTTCTTGCTTGGCGGATATGGTCTAT 753 ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 421 GGAAGTGATGAACTCTCTGAAGCTTCTCAGCTTCTTTCTTGTTTGGCGGATATGGTCTAT 480 Query 754 TGCACGGTTTGTGCGTGTATGCAGACACAACACAAGATTGAGATGGACAAAAGAGATGGT 813 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 TGCACGGTTTGTGCGTGTATGCAGACACAACACAAGATTGAGATGGACAAAAGAGATGGT 540 Query 814 TTGATTAGTCCTCAACCAATGTCAGTGCCACCAGCTCAGCAAATGTCTCGCATTGATCAA 873 ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 541 GTGATTAGTCCTCAGCCAATGTCAGTGCCACCGGCTCAGCAAATGTCTCGCATTGATCAA 600 Query 874 CCGGTCCCTCCCTATGCCGGTTACCCTCCAGCCACTGGTTATCCCCAGCATTACTATCCA 933 || ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 601 CCAGTCCCTCCCTATGCCGGTTACCCTCCAGCTACTGGCTATCCCCAGCATTACTATCCA 660 Query 934 CAGCCTGGCCATGGTTACCCTCCTGCTCCAGGCTATCCACCTCCCGGTCACGGTTACCCT 993 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 661 CAGCCTGGCCATGGTTACCCTCCTGCTCCAGGCTATCCACCTCCCGGTTACGGTTACCCT 720 Query 994 CCTGCACCGGGCTATCCGCCAGCTCCGGGCTATCCA 1029 ||||||||||| ||||||||||||||||| || ||| Sbjct 721 CCTGCACCGGGATATCCGCCAGCTCCGGGATACCCA 756 > Ahg924569 jgi|Araly1|924569|scaffold_200130.1 Length=737 Score = 638 bits (345), Expect = 0.0 Identities = 546/642 (85%), Gaps = 17/642 (3%) Strand=Plus/Plus Query 267 CAAAGTTATGGCGCGTTCGCAGGATAAGCTTGATAAGATGCAACTCCGGCAAAG-TTACC 325 ||||| |||||| | || || |||||||| || |||||| ||||||| | | | ||||| Sbjct 15 CAAAGCAATGGCGGGGTCACAAGATAAGCTGGAGAAGATGAAACTCCGTC-AGGATTACC 73 Query 326 GGAATTTATGGCACTCCGATCTCATGGGCACCGTCTCGGCGGATACTCCATATTGTTTCT 385 |||| |||||||||||||||||||||||||||||| | || || ||||| ||||| | | Sbjct 74 GGAACTTATGGCACTCCGATCTCATGGGCACCGTCACCGCCGACACTCCCTATTGCTGCA 133 Query 386 TCTCGTGTTTGTGTGGACCTTGCGTTTCATACTTACTTCGGAAG-AGAGCACTTTATAAT 444 |||||||| ||||||||||||| ||||||||| | |||||| || ||||||||||| ||| Sbjct 134 TCTCGTGTCTGTGTGGACCTTGTGTTTCATACATGCTTCGG-AGAAGAGCACTTTACAAT 192 Query 445 GACATGTCAAGGTACACTTGTTGTGGTGGTTACATGCCTTGTAGTGGTAAG-TGTGGAGA 503 |||||||||||||| ||||| |||| ||| || |||||||||||||| || |||||||| Sbjct 193 GACATGTCAAGGTATACTTGCTGTGCTGGATATATGCCTTGTAGTGG-GAGATGTGGAGA 251 Query 504 AAGCAAATGCCCTCAATTTTGTCTTGCCACCGAGGTGTGTCTCTGTTTCGGGAACTCTGT 563 ||||||||| |||||| |||| |||||||||||||| | ||| || ||||| ||||| || Sbjct 252 AAGCAAATGTCCTCAACTTTGCCTTGCCACCGAGGTTTTTCTTTGCTTCGGAAACTCCGT 311 Query 564 GGCATCTACTCGTTTTATGT-TGCAAGATGAATTCAACATCCATACAACAAAATGCGACA 622 ||| ||||| || ||| | | |||| ||||||||||||||||| |||||| ||||||||| Sbjct 312 GGCCTCTACCCGCTTTCT-TCTGCAGGATGAATTCAACATCCAGACAACACAATGCGACA 370 Query 623 ATTGCATAATTGGATTTATGTTCTGCCTCAACCAAATCGCTTGCATTTTCTCTCTTGTCG 682 |||||||||||||||||||||||||||||| |||| | |||||||| |||||| | || | Sbjct 371 ATTGCATAATTGGATTTATGTTCTGCCTCAGCCAAGTTGCTTGCATATTCTCTATAGTTG 430 Query 683 CTTGCATTGTTGGAAGTGATGAACTCTCTGAAGCGTCTCAGCTTCTTTCTTGCT-TGGCG 741 ||||||||||||| ||| ||||||| ||||| || |||||| | || ||||||| || | Sbjct 431 CTTGCATTGTTGGTAGTAATGAACTTTCTGAGGCTTCTCAGATACTCTCTTGCTGTG-CT 489 Query 742 GATATGGTCTATTGCACGGTTTGTGCGTGTATGCAGACACAACACAAGATTGAGATGGAC 801 || |||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 490 GAAATGGTCTACTGCACGGTTTGTGCATGTATGCAGACACAACACAAGCTTGAGATGGAC 549 Query 802 AAAAGAGATGGTTTGATTAG-TCCTCAACCAATGT-CAGTGCCACCAGCTCAGCAAATGT 859 ||||||||||| || || | || |||||||||| | ||||||||||||||||| |||| Sbjct 550 AAAAGAGATGGAGTGTTTGGATC-TCAACCAATGGGC-GTGCCACCAGCTCAGCAGATGT 607 Query 860 CTCGCATTGATCAACCGGTCCCTCCCTATGCCGGTTACCCTC 901 | || |||||||||| |||||||| | || || ||||||| Sbjct 608 CCCGTTTTGATCAACCTGTCCCTCC-T--GCTGGATACCCTC 646 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48530473341 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5