BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41390.1
Length=1298
Score E
Sequences producing significant alignments: (Bits) Value
Ahg330382 jgi|Araly1|330382|fgenesh1_pm.C_scaffold_7002609 1269 0.0
Ahg924569 jgi|Araly1|924569|scaffold_200130.1 638 0.0
> Ahg330382 jgi|Araly1|330382|fgenesh1_pm.C_scaffold_7002609
Length=783
Score = 1269 bits (687), Expect = 0.0
Identities = 733/756 (97%), Gaps = 0/756 (0%)
Strand=Plus/Plus
Query 274 ATGGCGCGTTCGCAGGATAAGCTTGATAAGATGCAACTCCGGCAAAGTTACCGGAATTTA 333
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGGGTTCGCAGGATAAGCTTGATAAGATGCAACTCCGGCAAAGTTACCGGAATTTA 60
Query 334 TGGCACTCCGATCTCATGGGCACCGTCTCGGCGGATACTCCATATTGTTTCTTCTCGTGT 393
|||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||
Sbjct 61 TGGCACTCCGATCTCATGAGCACCGTCTCGGCCGATACTCCTTATTGTTTCTTCTCGTGT 120
Query 394 TTGTGTGGACCTTGCGTTTCATACTTACTTCGGAAGAGAGCACTTTATAATGACATGTCA 453
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 121 TTGTGTGGACCTTGCGTTTCATACTTACTTCGGAAAAGAGCACTTTACAATGACATGTCA 180
Query 454 AGGTACACTTGTTGTGGTGGTTACATGCCTTGTAGTGGTAAGTGTGGAGAAAGCAAATGC 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGGTACACTTGTTGTGGTGGTTACATGCCTTGTAGTGGTAAGTGTGGAGAAAGCAAATGC 240
Query 514 CCTCAATTTTGTCTTGCCACCGAGGTGTGTCTCTGTTTCGGGAACTCTGTGGCATCTACT 573
|| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 241 CCGCAATTTTGTCTTGCCACTGAGGTGTGTCTCTGTTTCGGGAATTCTGTGGCATCTACT 300
Query 574 CGTTTTATGTTGCAAGATGAATTCAACATCCATACAACAAAATGCGACAATTGCATAATT 633
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CGTTTTATGCTGCAAGATGAATTCAACATCCATACAACAAAATGCGACAATTGCATAATT 360
Query 634 GGATTTATGTTCTGCCTCAACCAAATCGCTTGCATTTTCTCTCTTGTCGCTTGCATTGTT 693
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GGATTTATGTTCTGCCTCAACCAAATCGCTTGCATTTTCTCTCTTGTCGCTTGCATTGTA 420
Query 694 GGAAGTGATGAACTCTCTGAAGCGTCTCAGCTTCTTTCTTGCTTGGCGGATATGGTCTAT 753
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 421 GGAAGTGATGAACTCTCTGAAGCTTCTCAGCTTCTTTCTTGTTTGGCGGATATGGTCTAT 480
Query 754 TGCACGGTTTGTGCGTGTATGCAGACACAACACAAGATTGAGATGGACAAAAGAGATGGT 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TGCACGGTTTGTGCGTGTATGCAGACACAACACAAGATTGAGATGGACAAAAGAGATGGT 540
Query 814 TTGATTAGTCCTCAACCAATGTCAGTGCCACCAGCTCAGCAAATGTCTCGCATTGATCAA 873
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 541 GTGATTAGTCCTCAGCCAATGTCAGTGCCACCGGCTCAGCAAATGTCTCGCATTGATCAA 600
Query 874 CCGGTCCCTCCCTATGCCGGTTACCCTCCAGCCACTGGTTATCCCCAGCATTACTATCCA 933
|| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 601 CCAGTCCCTCCCTATGCCGGTTACCCTCCAGCTACTGGCTATCCCCAGCATTACTATCCA 660
Query 934 CAGCCTGGCCATGGTTACCCTCCTGCTCCAGGCTATCCACCTCCCGGTCACGGTTACCCT 993
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 661 CAGCCTGGCCATGGTTACCCTCCTGCTCCAGGCTATCCACCTCCCGGTTACGGTTACCCT 720
Query 994 CCTGCACCGGGCTATCCGCCAGCTCCGGGCTATCCA 1029
||||||||||| ||||||||||||||||| || |||
Sbjct 721 CCTGCACCGGGATATCCGCCAGCTCCGGGATACCCA 756
> Ahg924569 jgi|Araly1|924569|scaffold_200130.1
Length=737
Score = 638 bits (345), Expect = 0.0
Identities = 546/642 (85%), Gaps = 17/642 (3%)
Strand=Plus/Plus
Query 267 CAAAGTTATGGCGCGTTCGCAGGATAAGCTTGATAAGATGCAACTCCGGCAAAG-TTACC 325
||||| |||||| | || || |||||||| || |||||| ||||||| | | | |||||
Sbjct 15 CAAAGCAATGGCGGGGTCACAAGATAAGCTGGAGAAGATGAAACTCCGTC-AGGATTACC 73
Query 326 GGAATTTATGGCACTCCGATCTCATGGGCACCGTCTCGGCGGATACTCCATATTGTTTCT 385
|||| |||||||||||||||||||||||||||||| | || || ||||| ||||| | |
Sbjct 74 GGAACTTATGGCACTCCGATCTCATGGGCACCGTCACCGCCGACACTCCCTATTGCTGCA 133
Query 386 TCTCGTGTTTGTGTGGACCTTGCGTTTCATACTTACTTCGGAAG-AGAGCACTTTATAAT 444
|||||||| ||||||||||||| ||||||||| | |||||| || ||||||||||| |||
Sbjct 134 TCTCGTGTCTGTGTGGACCTTGTGTTTCATACATGCTTCGG-AGAAGAGCACTTTACAAT 192
Query 445 GACATGTCAAGGTACACTTGTTGTGGTGGTTACATGCCTTGTAGTGGTAAG-TGTGGAGA 503
|||||||||||||| ||||| |||| ||| || |||||||||||||| || ||||||||
Sbjct 193 GACATGTCAAGGTATACTTGCTGTGCTGGATATATGCCTTGTAGTGG-GAGATGTGGAGA 251
Query 504 AAGCAAATGCCCTCAATTTTGTCTTGCCACCGAGGTGTGTCTCTGTTTCGGGAACTCTGT 563
||||||||| |||||| |||| |||||||||||||| | ||| || ||||| ||||| ||
Sbjct 252 AAGCAAATGTCCTCAACTTTGCCTTGCCACCGAGGTTTTTCTTTGCTTCGGAAACTCCGT 311
Query 564 GGCATCTACTCGTTTTATGT-TGCAAGATGAATTCAACATCCATACAACAAAATGCGACA 622
||| ||||| || ||| | | |||| ||||||||||||||||| |||||| |||||||||
Sbjct 312 GGCCTCTACCCGCTTTCT-TCTGCAGGATGAATTCAACATCCAGACAACACAATGCGACA 370
Query 623 ATTGCATAATTGGATTTATGTTCTGCCTCAACCAAATCGCTTGCATTTTCTCTCTTGTCG 682
|||||||||||||||||||||||||||||| |||| | |||||||| |||||| | || |
Sbjct 371 ATTGCATAATTGGATTTATGTTCTGCCTCAGCCAAGTTGCTTGCATATTCTCTATAGTTG 430
Query 683 CTTGCATTGTTGGAAGTGATGAACTCTCTGAAGCGTCTCAGCTTCTTTCTTGCT-TGGCG 741
||||||||||||| ||| ||||||| ||||| || |||||| | || ||||||| || |
Sbjct 431 CTTGCATTGTTGGTAGTAATGAACTTTCTGAGGCTTCTCAGATACTCTCTTGCTGTG-CT 489
Query 742 GATATGGTCTATTGCACGGTTTGTGCGTGTATGCAGACACAACACAAGATTGAGATGGAC 801
|| |||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 490 GAAATGGTCTACTGCACGGTTTGTGCATGTATGCAGACACAACACAAGCTTGAGATGGAC 549
Query 802 AAAAGAGATGGTTTGATTAG-TCCTCAACCAATGT-CAGTGCCACCAGCTCAGCAAATGT 859
||||||||||| || || | || |||||||||| | ||||||||||||||||| ||||
Sbjct 550 AAAAGAGATGGAGTGTTTGGATC-TCAACCAATGGGC-GTGCCACCAGCTCAGCAGATGT 607
Query 860 CTCGCATTGATCAACCGGTCCCTCCCTATGCCGGTTACCCTC 901
| || |||||||||| |||||||| | || || |||||||
Sbjct 608 CCCGTTTTGATCAACCTGTCCCTCC-T--GCTGGATACCCTC 646
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48530473341
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5