BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41400.1
Length=801
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947578 jgi|Araly1|947578|scaffold_703807.1 876 0.0
Ahg474972 jgi|Araly1|474972|fgenesh2_kg.2__102__AT1G63840.1 193 2e-48
> Ahg947578 jgi|Araly1|947578|scaffold_703807.1
Length=572
Score = 876 bits (474), Expect = 0.0
Identities = 535/564 (95%), Gaps = 5/564 (1%)
Strand=Plus/Plus
Query 43 TCTCTTTCTAGCGGCGAAGCCATGGGTTATCCGGTGGGGTACACTGAGCTCCTCCTCCCA 102
||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 TCTCTCTCTAACGGCGAAGCCATGGGTTATCCGGTGGGCTACACTGAGCTCCTCCTCCCA 60
Query 103 AGAATCTTCCTTCACTTACTCTCTCTCTTAGGCTTAATACGAACACTCATAGACACGGGT 162
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 61 AGAATCTTCCTTCACTTACTCTCTCTCTTAGGCTTAATCCGAACACTCATAGACACTGGT 120
Query 163 TTTCGGATATTGGGTCTACCCGACTTTCTCGAATCCGACCCGGTTTCATCGTCATCGTCA 222
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct 121 TTTCGGATATTGGGTCTACCCGACTTCCTCGAATCCGACCCAGTTTCATCGTCATCATCA 180
Query 223 TGGCTGGAACCACCGTATATGTCCACGGCGGCGCATCATCACCAAGAAAGCTCATTTTTC 282
|||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 181 TGGCCGGAACCACCGTCTATGTCCTCGGCGGCGCATCATCACCAAGAAAGCTCATTTTTC 240
Query 283 TTCCCAGTGGCGGCGAGGCTAGCTGGAGAAATCTTGCCCGTCATCAGATTCTCGGAGCTA 342
|| ||||| |||||||||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct 241 TTTCCAGTAGCGGCGAGGCTAGCAGGAGAAATCTTACCCGTTATCAGATTCTCGGAGCTA 300
Query 343 A-CTCGACCCGGATTCGGATCCGGATCCGATTGCTGCGCGGTGTGCCTCCACGAGTTCGA 401
| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 301 AAC-CGACCCGGATTCGGATCCGGATCAGATTGCTGCGCGGTGTGCCTCCACGAGTTCGA 359
Query 402 GAACGATGACGAGATCCGACGGCTGACGAATTGTCAACACATATTTCACCGGAGCTGTTT 461
|||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 360 GAACGAAGACGAGATCCGACGGCTGACGAATTGCCAACACATATTTCATCGGAGCTGTTT 419
Query 462 AGACCGTTGGATGATGGGTTATAATCAGATGACGTGTCCACTTTGTAGAACGCCGTTTAT 521
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 420 GGACCGTTGGATGATGGGTTATAATCAGATGACGTGTCCACTTTGTAGGACGCCGTTTAT 479
Query 522 TTCTGATGAGTTACAAGTTGCTTTTAACCAACGAGTTTGGTCTGAATCTGA-ACTTCTCG 580
| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 480 TCCTGATGAGTTACAAGTTGCTTTTAACCAACGAGTTTGGTCTGAATCTGACA-TTCTCG 538
Query 581 CAGAATCAAATTAGAATCTTTCTT 604
||||||||| |||||||||| |||
Sbjct 539 CAGAATCAACTTAGAATCTT-CTT 561
> Ahg474972 jgi|Araly1|474972|fgenesh2_kg.2__102__AT1G63840.1
Length=952
Score = 193 bits (104), Expect = 2e-48
Identities = 177/212 (83%), Gaps = 6/212 (3%)
Strand=Plus/Plus
Query 362 CCGGATCCGATTGCTGCGCGGTGTGCCTCCACGAGTTCGAGAACGATGACGAGATCCGAC 421
||| |||||| || || || ||||| ||| |||| |||||||| || |||||||||||||
Sbjct 473 CCGAATCCGAATGTTGTGCAGTGTGTCTCTACGATTTCGAGAAAGACGACGAGATCCGAC 532
Query 422 GGCTGACGAATTGTCAACACATAT-TT-CACCGGAGCTGTTTAGACCGTTGGATGATGGG 479
|||||||||||||| || ||||| || || ||| | ||||| |||||||||||||||||
Sbjct 533 GGCTGACGAATTGT--ACTCATATATTCCATCGGGGATGTTTGGACCGTTGGATGATGGG 590
Query 480 TTATAATCAGATGACGTGTCCACTTTGTAGAACGCCGTTTATTTCTGATGAGT-TACAAG 538
|||||||||||||||||||||||||||| | |||| |||||| ||||| | | | |||
Sbjct 591 TTATAATCAGATGACGTGTCCACTTTGTCGTACGCAGTTTATACCTGATCA-TCTGCAAC 649
Query 539 TTGCTTTTAACCAACGAGTTTGGTCTGAATCT 570
| | ||||| ||| || ||||||||||||||
Sbjct 650 TGGAGTTTAATCAAAGACTTTGGTCTGAATCT 681
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29583383592
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5