BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41430.1
Length=486
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947575 jgi|Araly1|947575|scaffold_703804.1 409 1e-113
Ahg941700 jgi|Araly1|941700|scaffold_602244.1 316 7e-86
> Ahg947575 jgi|Araly1|947575|scaffold_703804.1
Length=481
Score = 409 bits (221), Expect = 1e-113
Identities = 369/434 (85%), Gaps = 35/434 (8%)
Strand=Plus/Plus
Query 1 ATGATAGAATCTATGCCCTCGCTGGATGTGTCT-TCAAT-A-G-TCGTTACAGGGGCCAT 56
||||||||||||||||||| ||| ||| ||| | ||||| | | || || || |||||||
Sbjct 21 ATGATAGAATCTATGCCCTTGCTAGATTTGT-TATCAATAATGTTCTTTCCATGGGCCAT 79
Query 57 TTTAATAGT-CTTGTTCACCTTATATATCATCTCTGA-CTCTTGCAACAAGTATATTCAA 114
| || || | ||| |||| ||||||||| || | | | || || |||||| |||||||||
Sbjct 80 TGTACTA-TCCTTCTTCATCTTATATAT-ATGTATCATCTTTTACAACAAATATATTCAA 137
Query 115 CCTCCTACGGAACTAGCTCTTGAGACACATCAAAActctcatccctcacttcctcctctg 174
|||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 138 CCTCCTACGGAATTAGCTCTTGAGACTCATCAAAACTCTCATCCCTCA------------ 185
Query 175 cctgtgcctctgcctctgcctctgcctcagcctcagcctcagcctcagcAAGACAATGAA 234
|| | | || ||||||||||||||||||||| | |||||||||||||| ||||
Sbjct 186 -CT-T--C-CT-CCTCTGCCTCTGCCTCAGCCT-----T-TGCCTCAGCAAGACATTGAA 233
Query 235 ACCGGACATCTAATGCCGCTTCATTCTCAACTAGAATTTAAAATCGGTTATAGGGCATC- 293
|||||||||||| ||||||||| ||||||||||||| ||||| ||||||||||||| |
Sbjct 234 ACCGGACATCTAGCGCCGCTTCAGTCTCAACTAGAATATAAAACCGGTTATAGGGCA-CG 292
Query 294 GATCGAGGAAATGGAGTTTAAAGATATTGAAAAAGAAGGATTTGATGAGATTGGTTGTTC 353
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 293 GATCGAGGAAATGGAGTTTAAAGATATTGAAAAAGAAGGGTTTGATGAGATTTGTTGTTC 352
Query 354 AATTTGTCTTGAAGAGTTAGAAGATGGCCATGAGATTATCCGTATAAAGAAGTGTAGACA 413
||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||
Sbjct 353 AATTTGTCTTGAAGAGTTAAAAGATGGCCATGAGATTATCCGTATCAAGAAGTGTAAACA 412
Query 414 TGTTTTCCATCGTT 427
||||||||||||||
Sbjct 413 TGTTTTCCATCGTT 426
> Ahg941700 jgi|Araly1|941700|scaffold_602244.1
Length=472
Score = 316 bits (171), Expect = 7e-86
Identities = 250/287 (87%), Gaps = 10/287 (3%)
Strand=Plus/Plus
Query 201 tcagcctcagcctca-gcctcagcAAGACAATGAAACCGGACATCTAATGCCGCTTCATT 259
||| || |||||| | | |||| ||||||| ||||||||||||||||| ||| | |||
Sbjct 167 TCATCCACAGCCT-ATGACTCAACAAGACATTGAAACCGGACATCTAACGCCACCACATC 225
Query 260 CTCAACTAGA-ATTTAAAATCGGTTATAGGGCAT-C-GATCGAGGAAATGGAGTTTAAAG 316
|||||| ||| | | |||| ||| |||| | || | ||||||| |||| ||||||||||
Sbjct 226 CTCAACAAGACA-TCAAAACCGGATATA-TG-ATGCAGATCGAGAAAATAGAGTTTAAAG 282
Query 317 ATATTGAAAAAGAAGGATTTGATGAGATTGGTTGTTCAATTTGTCTTGAAGAGTTAGAAG 376
||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| ||||
Sbjct 283 GTATTGAAGAAGAAGGATTTGATCAGATTTGTTGTTCAATTTGTCTTGAAGAGTTTGAAG 342
Query 377 ATGGCCATGAGATTATCCGTATAAAGAAGTGTAGACATGTTTTCCATCGTTC-TTGTATT 435
|||||||||| |||||||||||||||| ||||||||||||||| ||||| || |||||||
Sbjct 343 ATGGCCATGATATTATCCGTATAAAGATGTGTAGACATGTTTTTCATCG-TCTTTGTATT 401
Query 436 GATTCTTGGCTGAAACAGAATCGAAGCTGCCCAAATTGTCGATGTTT 482
|||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 402 GATTCTTGGCTGAAACAGAATCAAAGCTGCCCCAATTGTCGATGTTT 448
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17627882118
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5