BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41450.1
Length=495
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947574 jgi|Araly1|947574|scaffold_703803.1 494 3e-139
Ahg941700 jgi|Araly1|941700|scaffold_602244.1 261 3e-69
Ahg947587 jgi|Araly1|947587|scaffold_703816.1 209 1e-53
> Ahg947574 jgi|Araly1|947574|scaffold_703803.1
Length=889
Score = 494 bits (267), Expect = 3e-139
Identities = 345/382 (90%), Gaps = 8/382 (2%)
Strand=Plus/Plus
Query 101 TTT-ATA-AACTTTGCATAGATCTTAGTCAGCAACCTCCTACGGAAATAGCTCGTGAGAC 158
||| ||| || |||||||||| | || |||||||||||||||||||||||||| ||||||
Sbjct 117 TTTGATAGAA-TTTGCATAGAGCCTATTCAGCAACCTCCTACGGAAATAGCTCTTGAGAC 175
Query 159 ACACCAAAATTCTCATCCACCACCTGATCAGCT-TCAACAAGACATTGAGACTGGACATG 217
||||||||||||||||||| ||| |||| | |||| ||||||||||||| |||||||
Sbjct 176 TCACCAAAATTCTCATCCACTACC---TCAG-TCTCAAGAAGACATTGAGACCGGACATG 231
Query 218 TAACGCTGCCTCAGCCTCAACAAAACATTGCAGTCGGATATATGACATGGATCCATGAAA 277
||| ||||||||||||||||||| |||| || |||||| |||||| |||||| ||||||
Sbjct 232 TAATGCTGCCTCAGCCTCAACAAGACATAACAATCGGATGTATGACGTGGATCAATGAAA 291
Query 278 CGACAATTTTAGAGTTTAAAGATATAAAAGAAGGATCCAATAAGATTTTTTGTCCAATAT 337
||||| ||||||||||||||||||| ||||||| ||||||||||||| |||||| ||||
Sbjct 292 CGACAGTTTTAGAGTTTAAAGATATCGAAGAAGGGTCCAATAAGATTTGTTGTCCGATAT 351
Query 338 GTCTTGAAGAGTTTGAAGATGGCCATGAGATAATTCGTATAAATATGTGTAGACATGTTT 397
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 352 GTCTTGAAGAGTTTGAAGATGGCCATGAGATTATTCGTATAAATATGTGTAGACATGTTT 411
Query 398 TTCATCGTTTTTGTATTGATCCTTGGCTCAATCAGAATCTAACCTGCCCGAATTGTCGAT 457
|||||||||||||||||||| ||||||||||||||||| || ||| |||||||||||||
Sbjct 412 TTCATCGTTTTTGTATTGATTATTGGCTCAATCAGAATCGAAGCTGTCCGAATTGTCGAT 471
Query 458 GCTCCCTTACTGCAAGAAAGAG 479
||||||||| ||||||||||||
Sbjct 472 GCTCCCTTAATGCAAGAAAGAG 493
> Ahg941700 jgi|Araly1|941700|scaffold_602244.1
Length=472
Score = 261 bits (141), Expect = 3e-69
Identities = 273/334 (82%), Gaps = 19/334 (6%)
Strand=Plus/Plus
Query 130 CAACCTCCTACGGAAATAGCTCGTGAGACACACCAAAATTC-TCATCCACCA-CCTGATC 187
||||||||||||||| ||| || |||||| |||||||| | ||||||| || ||| ||
Sbjct 126 CAACCTCCTACGGAACTAGGTCTTGAGACTCACCAAAA-CCATCATCCA-CAGCCT-ATG 182
Query 188 AGCTTCAACAAGACATTGAGACTGGACATGTAACGCTGCCTCAGCCTCAACAAAACATTG 247
| | ||||||||||||||| || |||||| |||||| || || ||||||||| ||||
Sbjct 183 A-C-TCAACAAGACATTGAAACCGGACATCTAACGCCACCACATCCTCAACAAGACATCA 240
Query 248 CAGTCGGATATATGACATGGATCCATGAAACGACAATTTTAGAGTTTAAAGATA-T-AA- 304
| |||||||||| || | || | | ||| || |||||||||||| || | ||
Sbjct 241 AAACCGGATATATG--AT-G---CA-G-ATCGAGAA-AATAGAGTTTAAAGGTATTGAAG 291
Query 305 AAGAAGGATCCAATAAGATTTTTTGTCCAATATGTCTTGAAGAGTTTGAAGATGGCCATG 364
||||||||| || |||||| |||| |||| ||||||||||||||||||||||||||||
Sbjct 292 AAGAAGGATTTGATCAGATTTGTTGTTCAATTTGTCTTGAAGAGTTTGAAGATGGCCATG 351
Query 365 AGATAATTCGTATAAATATGTGTAGACATGTTTTTCATCGTTTTTGTATTGATCCTTGGC 424
| || || |||||||| |||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 352 ATATTATCCGTATAAAGATGTGTAGACATGTTTTTCATCGTCTTTGTATTGATTCTTGGC 411
Query 425 TCAATCAGAATCTAACCTGCCCGAATTGTCGATG 458
| || ||||||| || |||||| |||||||||||
Sbjct 412 TGAAACAGAATCAAAGCTGCCCCAATTGTCGATG 445
> Ahg947587 jgi|Araly1|947587|scaffold_703816.1
Length=487
Score = 209 bits (113), Expect = 1e-53
Identities = 265/336 (79%), Gaps = 20/336 (6%)
Strand=Plus/Plus
Query 130 CAACCTCCTACGGAAAT-AGCTCGTGAGACACACCAAAATTCTCATCCACCACCTGATCA 188
||||||||||||| ||| ||||| ||| || |||||||| | |||| ||| ||
Sbjct 138 CAACCTCCTACGG-AATCAGCTCTTGATACTCACCAAAA----C--CCACTTCCTTCTCT 190
Query 189 GCTTCAACAAGACATTGAGACTGGACATGTAACGCTGCCTCAGCCTCAACAAAACATTGC 248
|| |||||||||||||||| |||||||| |||||| |||||| |||||||| ||||
Sbjct 191 GCCTCAACAAGACATTGAGTCTGGACATCTAACGCCACCTCAGTCTCAACAAGACATCAA 250
Query 249 AGTCGGATATATGACAT-GGATCCATGAAACGACAATTTTAGAGTTTAAAGAT-ATAA-A 305
| ||||||||||| | ||||| | |||| | | |||| || | | || | || |
Sbjct 251 AACCGGATATATGA-GTCGGATCGAGGAAATG--GAGTTTAAAG-AT-ATCATCA-AAGA 304
Query 306 AGAAGGA--T-CCAATAAGATTTTTTGTCCAATATGTCTTGAAGAGTTTGAAGATGGCCA 362
||||||| | || |||||| |||| |||| | ||||||||||||||||||||||||
Sbjct 305 AGAAGGATTTGGTGATGAGATTTGTTGTTCAATTTTTCTTGAAGAGTTTGAAGATGGCCA 364
Query 363 TGAGATAATTCGTATAAATATGTGTAGACATGTTTTTCATCGTTTTTGTATTGATCCTTG 422
|| || | |||||||| | |||||||||||||||||||||||||||||||| | ||||
Sbjct 365 TGCCATTGTCCGTATAAACAAGTGTAGACATGTTTTTCATCGTTTTTGTATTGTTTCTTG 424
Query 423 GCTCAATCAGAATCTAACCTGCCCGAATTGTCGATG 458
||| || ||||| | |||||||||||||||||||||
Sbjct 425 GCTGAAACAGAAACGAACCTGCCCGAATTGTCGATG 460
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17971282419
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5