BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41460.1
Length=1745
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947573 jgi|Araly1|947573|scaffold_703802.1 2483 0.0
> Ahg947573 jgi|Araly1|947573|scaffold_703802.1
Length=1609
Score = 2483 bits (1344), Expect = 0.0
Identities = 1527/1615 (95%), Gaps = 14/1615 (1%)
Strand=Plus/Plus
Query 29 ATCTTTGGTTCTTAAGATGAAGCTGAATAACCAGAAAGATCCAGCAGAGAAGCTAATGTG 88
||||||||||||| |||||||| || || ||||||||| ||||||||||| ||||
Sbjct 5 ATCTTTGGTTCTTGAGATGAAGTTG-AT-----TAAAGATCCATCAGAGAAGCTAGTGTG 58
Query 89 GGAACGGACTTTATCCGGATCCGGTTCACCGACCCGACCCGTATCCAAACTTATGGTAAC 148
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct 59 GGAACGGACTTTATCCGGATCCGGTTCACCAACCCGACCCGTATCCAAACTAATGGTGAC 118
Query 149 GCTCCTCCTCCTCGTCTCCGCCACTTACGTTGTCTACACACTAAAGCTTATCTCAAACTC 208
||||||||| |||||||||||||||||||| |||||||||||||| || |||||||||||
Sbjct 119 GCTCCTCCTTCTCGTCTCCGCCACTTACGTCGTCTACACACTAAAACTCATCTCAAACTC 178
Query 209 ACGTGCTTGTCAAGTGGAGCCATTCTCCGCCGTTGTTCGTCGTCTCAACGACATTGTCAA 268
|||||| ||||| |||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 179 ACGTGCCTGTCACGTGGAGCCATTCTCCGATGTTGTTCGTCGTCTCAACGACATTGTGAA 238
Query 269 CTCATCTCAACCGTTGATTCTCTTCCACACAAATCAAACGGCTGTAATCAAATCATACGC 328
||||||||| || || |||||||||||| |||||||||| || ||||||||||| ||| |
Sbjct 239 CTCATCTCAGCCATTTATTCTCTTCCACGCAAATCAAACCGCCGTAATCAAATCTTACAC 298
Query 329 CTCTccaccaccttcacca---ccaccaccaccTCCGCCACCGCAAACCGGTTTCCAACA 385
||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||
Sbjct 299 CTCTCCACCACCTTCACCACTTCCACCACCACCTCCGCCGCCGCAAACCGGGTTCCAACA 358
Query 386 CGTGGTTTTCGGTATCGCCGCGTCGGCAAGACTATGGAAACAGAGAAAAGAGTACATCAA 445
|||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 359 CGTGGTTTTCGGAATCGCCGCGTCGGCGAGACTATGGAAACAGAGGAAAGAGTACATCAA 418
Query 446 GATTTGGTACAAACCAAACCAAATGCGTAGTTATGTCTGGTTAGAAAAACCAGTTACTGA 505
||||||||| |||||||||||||||||| |||| ||||||||||||||||| |||| |
Sbjct 419 GATTTGGTATAAACCAAACCAAATGCGTGGTTACGTCTGGTTAGAAAAACCGGTTA---A 475
Query 506 AGAAGACGAAGAAGACGAAATTAGCCTCCCGCCGGTGAAAATCTCCGGCGATACATCGAA 565
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 GGAAGAAGAAGAAGACGAAATTAGCCTCCCGCCGGTGAAAATCTCCGGCGATACATCGAA 535
Query 566 GTTTCCGTATAAAAACAAACAAGGACACAGATCGGCGATTAGAATTTCAAGAATCGTTAC 625
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 536 GTTTCCGTATAAAAACAAACAAGGACACAGATCGGCGATTAGAATTTCAAGAATTGTTAC 595
Query 626 GGAGACACTTAAATTAGGACTCAAAGATGTGAGATGGTTCGTTATGGGAGACGATGATAC 685
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 596 GGAGACACTCAAATTAGGACTCAAAGATGTGAGATGGTTTGTTATGGGAGACGATGATAC 655
Query 686 AGTCTTTGTCGCCGAGAATCTAATCAGAGTTTTGAGAAAATACGATCATAATCAAATGTA 745
|||||| |||||||||||| | |||||||||||||||||||||||||||||||| |||||
Sbjct 656 AGTCTTCGTCGCCGAGAATTTGATCAGAGTTTTGAGAAAATACGATCATAATCAGATGTA 715
Query 746 TTACATCGGCAGTTTATCGGAGAGTCATCTTCAGAACATTTATTTCTCTTATGGAATGGC 805
||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 716 TTACATCGGAAGTTTATCGGAAAGTCATCTTCAGAACATTTACTTCTCTTATGGAATGGC 775
Query 806 TTATGGCGGTGGAGGATTTGCTATAAGTTATCCATTAGCGGTGGCTTTGAGCAAAATGCA 865
||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 776 TTACGGCGGCGGAGGATTTGCTATAAGTTATCCATTAGCGGTGGCGCTGAGCAAAATGCA 835
Query 866 AGATCGGTGTATTAAAAGGTATCCGGCGTTGTACGGTTCCGATGATCGGATGCAAGCTTG 925
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 AGATCGGTGTATCAAAAGGTATCCGGCGTTGTACGGTTCCGATGATCGGATGCAAGCTTG 895
Query 926 CATGGCTGAACTCGGTGTTCCACTCACTAAAGAACTCGGTTTTCACCAGTACGATGTGTA 985
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 CATGGCTGAACTCGGTGTTCCACTCACTAAAGAACTCGGTTTTCACCAGTACGATGTGTA 955
Query 986 TGGCAATCTCTTTGGATTACTAGCGGCTCACCCGGTGGCTCCACTGGTTACGCTTCATCA 1045
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 956 TGGCAATCTCTTTGGATTACTAGCGGCTCACCCGGTGGCTCCATTGGTTACGCTTCATCA 1015
Query 1046 CCTCGACGTGGTCGAACCGAT-TTTCCCAAACATGACACGTGTTGATGCCTTGAAGCATC 1104
|||||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||
Sbjct 1016 CCTCGACGTGGTTGAACCGATCTTTCCTAA-CATGACACGTGTTGATGCCTTGAAGCATT 1074
Query 1105 TACAAGTCCCGGCAAAGCTAGACTCTGCTGGACTTATGCAACAGTCGATATGCTATGACA 1164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 TACAAGTCCCGGCAAAGCTAGACTCTGCTGGACTTATGCAACAGTCGATATGCTATGACA 1134
Query 1165 AACGCCGCAAATGGACTGTTTCCGTCTCTTGGGGATTCGCGGTTCAGATTTTCCGCGGAA 1224
|||| || ||||||||||| |||||||||||||| || |||||||||||||| |||||||
Sbjct 1135 AACGTCGTAAATGGACTGTATCCGTCTCTTGGGGCTTTGCGGTTCAGATTTTTCGCGGAA 1194
Query 1225 TCTTTTCGGCTCGAGAGATTGAAATGCCGTCGAGAACTTTCTTAAATTGGTATCGACGGG 1284
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1195 TCTTTTCTGCTCGAGAGATTGAAATGCCGTCGAGAACCTTCTTAAATTGGTATCGACGGG 1254
Query 1285 CGGATTACACGGCATACGCTTTCAACACCCGACCCGTGAGTCGTCATCCGTGCCAGAAAC 1344
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1255 CGGATTACACGGCATACGCTTTCAACACCCGACCCGTGAGTCGACATCCATGCCAGAAAC 1314
Query 1345 CGTTTGTGTTCTATATGACATCAACCAGAGTTCATCGGGTGACAAATATGACAGTGAGCC 1404
||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||
Sbjct 1315 CGTTTGTGTTCTATATGACATCATCCAGTGTTCATCCGGTGACAAATATGACAGTGAGCC 1374
Query 1405 GTTATGAAATCCACCGCGTGGCTCATCCCGAGTGTCGGTGGAAGATGGCTAATCCCAGCG 1464
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1375 GTTATGAAATCCACCATGTGGCTCATCCCGAGTGTCGGTGGAAGATGGCTAATCCCGGCG 1434
Query 1465 ACATTAAGACAGTCATTGTTTACAAGAAACCGGACCCTCATCTTTGGGACAGGTCTCCTA 1524
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1435 ACATTAAGACGGTCATTGTTTACAAGAAACCGGACCCTCACCTTTGGGACAGGTCTCCTA 1494
Query 1525 GAAGAAATTGTTGTAGGGTGAAATCAAAGAAGAACAATACTTTGGAGATTAGTGTTGCAG 1584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 GAAGAAATTGTTGTAGGGTGAAATCAAAGAAGAACAATACTTTGGAGATTAGTGTTGCAG 1554
Query 1585 TTTGCAAAGAAGGTGAAGTGGTTGAAGTCGTGTAATAATATTCATGGTAAATTTT 1639
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1555 TTTGCAAAGAAGGTGAAGTGGTTGAAGTCGTGTAATAATATTCATGTTAAATTTT 1609
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65477131155
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5