BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41470.1
Length=983
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493835 jgi|Araly1|493835|fgenesh2_kg.7__3268__AT5G41470.1 1413 0.0
> Ahg493835 jgi|Araly1|493835|fgenesh2_kg.7__3268__AT5G41470.1
Length=974
Score = 1413 bits (765), Expect = 0.0
Identities = 918/989 (93%), Gaps = 22/989 (2%)
Strand=Plus/Plus
Query 1 ATGGCCTCCATGGTTAATGTTACGAGTATAATAGTTACGAGAAATCTCATCACCAAATTC 60
||||| |||||||||||||||| |||| ||||||||||||||||||||| |||||||||
Sbjct 1 ATGGCTTCCATGGTTAATGTTATGAGTCCAATAGTTACGAGAAATCTCATTACCAAATTC 60
Query 61 AAAACTCCACGGCTCAAACTAGATCTACCTTCTCTACAACATTCTAGCCAGTTGAATGCA 120
||||||| |||||| |||| ||||||||||||||||||||||| ||| ||| ||||||
Sbjct 61 AAAACTCAACGGCTGAAACCGGATCTACCTTCTCTACAACATTCCAGCTGGTTCAATGCA 120
Query 121 ATCAAGAATGATCCAATAAAAATGATAAATAAGTACGCTTCAAGGAGAAATATCGTGGTT 180
|||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 121 ATCAAGAATGATCCAAGAAAGATGATAAATAAGTATGCTTCAAGGAGAAATATCGTGGTT 180
Query 181 TCATGTTTGGATCGACCTAACTCTAGGCCGAATCAAATCTCTGGGTATGATGCTGTTATG 240
|||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 181 TCATGTTTAGATCGACCTAATTCTAGGCCTAATCAAATCTCTGGGTATGATGCTGTTATG 240
Query 241 AAATTTTATTCCTCTATAAACGAGAAGAATCAAGACCAATTAAGTAGTTGCATCTCCAGC 300
||||||||||||||||||||||||||||||||||| |||||||||||||| || || |||
Sbjct 241 AAATTTTATTCCTCTATAAACGAGAAGAATCAAGATCAATTAAGTAGTTGTATTTCAAGC 300
Query 301 GATTGTTTTATCGATGATTTCTCCTTTCCAAAGCCTTTTCGAGGGAA-ACAAGAAGCTAT 359
||||||||||||||||||||||||||| |||||||||||||| |||| | ||||||||||
Sbjct 301 GATTGTTTTATCGATGATTTCTCCTTTTCAAAGCCTTTTCGA-GGAAGAAAAGAAGCTAT 359
Query 360 GGAGTTCTTCGAAGAACTTGTGAAGAGTATGGGACAAAACGTTAAGTTTTGTGTTGAAAA 419
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GAAGTTCTTTGAAGAACTTGTGAAGAGTATGGGACAAAACGTTAAGTTTTGTGTTGAAAA 419
Query 420 TGTGTGTGAAGGTGATGGACATAGTGCTGCTGTTAATTGGCATCTTGAATGGAAAGGACG 479
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TGTATGTGAAGGAGATGGACATAGTGCTGCTGTTAATTGGCATCTTGAATGGAAAGGACG 479
Query 480 AAAAATTCCCTTTACAAGAGGATGTAGCTTCTATGAATTTATAGATGAAGGAGGAAGACT 539
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 480 AAAAATTCCCTTTACAAGAGGATGTAGCTTCTATGAATTTACAGATGAAGGAGGAAAACT 539
Query 540 GGTTATAAGAAACGCGAGGATTTTGATTGAATCGCCAATTAAACCGGGAGGAATAACATT 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 540 GGTTATAAGAAACGCGAGGATTTTGATTGAATCGCCAATTAAACCGGGAGGAATCACATT 599
Query 600 GAGCCTGTTAAAGAACATCACCTTCTTGTTCGACGAATTTCCAAAAGGAGCTGAGTTGTT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GAGCCTGTTAAAGAACATCACCTTCTTGTTCGACGAATTTCCAAAAGGAGCTGAGTTGTT 659
Query 660 TTTGGAAAAACCTTATGCTATAATCCAAGCAGCAATTCGAATTTATGGACTATTTTTGGC 719
|||||| |||||||||||||||||||||||| |||| | |||||||||||||||||||||
Sbjct 660 TTTGGAGAAACCTTATGCTATAATCCAAGCAACAATACAAATTTATGGACTATTTTTGGC 719
Query 720 GCCACTCATAAACCATGTAATGGCAAGCTACCTGAAGCT-TCTAAGCAATATGGCCGAAT 778
||||||| ||||||||||||||||||||||||||||||| | |||| || |||||||| |
Sbjct 720 GCCACTCGTAAACCATGTAATGGCAAGCTACCTGAAGCTAT-TAAGAAACATGGCCGAGT 778
Query 779 TCTTCTTATTGGTCGTCAAAATTATCATCAAAATTCGAAACCTCTTCTTCAAATAGAAGA 838
| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TTTTCTTATTAGTCGTGAAAATTATCATCAAAATTCGAAACCTCTTCTTCAAATAGAAGA 838
Query 839 AACAAGGACTGCATACTTTTATTCTAAATCATCTTTTTCCTATATTTGATGATATTATTT 898
||||| | || || | | || ||||||||| ||||||||||||||||||||||
Sbjct 839 AACAA----T---TA-TTCT-T---AA-TCATCTTTTCCCTATATTTGATGATATTATTT 885
Query 899 TACTAACCG--T-ATATGATTATTTGTACTTTCaaa--aaaaaaaaaCATTAACAATCTT 953
|||||||| | ||||||||||||||| ||| ||| ||||||||||||||||||||||
Sbjct 886 TACTAACCCCATTATATGATTATTTGTATTTTAAAATTAAAAAAAAACATTAACAATCTT 945
Query 954 GAGGGGTTGGTAATTAGAGATATTAAATT 982
||||||||||||| |||||||||||||||
Sbjct 946 GAGGGGTTGGTAAATAGAGATATTAAATT 974
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36521754486
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5