BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41480.1
Length=1746
Score E
Sequences producing significant alignments: (Bits) Value
Ahg330375 jgi|Araly1|330375|fgenesh1_pm.C_scaffold_7002602 2460 0.0
> Ahg330375 jgi|Araly1|330375|fgenesh1_pm.C_scaffold_7002602
Length=1593
Score = 2460 bits (1332), Expect = 0.0
Identities = 1511/1598 (95%), Gaps = 10/1598 (1%)
Strand=Plus/Plus
Query 41 ATGAGGACACTCTGGAATCACTTTAGTACCATTTCCTATAT-CAAAATTTCTCCGAGAAT 99
||||||||||| |||| ||||| ||| |||||||| || | ||||||||||||||||||
Sbjct 1 ATGAGGACACTGTGGAGCCACTTGAGTGCCATTTCCAAT-TGCAAAATTTCTCCGAGAAT 59
Query 100 GAGAAGAATTTCTGCAGCAAATTTGATCTCAAATCGAAATCTTTCAACCATTTCTTCTAC 159
|||||||| ||| |||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 60 AAGAAGAATATCTTCAGCAAATCTGACCTCAAATCGAAATCTTTCAACCATTTCTTCTAC 119
Query 160 TGAAGATCCCGAGCTCAGAGATTTTGTGGGATTTTTAGAATCTCTCAAAAACTATGAGAA 219
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 120 TGAAGATCCCGAGCTCAGAGATTTTGTGGGTTTTTTAGAATCTCTCAAAAACTATGAGAA 179
Query 220 ATCAGGTGTACCAAAAGGAGCTGGAACTGATTCTGATGATGGATTCGATCTGGGTCGAAT 279
||||||||| ||||||||||||||||||||||| | ||||||||||||||| |||||||
Sbjct 180 ATCAGGTGTTCCAAAAGGAGCTGGAACTGATTCCGGTGATGGATTCGATCTCAGTCGAAT 239
Query 280 GAAACGTCTCATGCTTCGCCTCCGTAATCCTCATTACAAATACAAGGTTGTTCATGTTGC 339
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||
Sbjct 240 GAAACGTCTCATGCTTCGCCTCCATAATCCTCATTCCAAATACAAGGTTGTTCATGTGGC 299
Query 340 TGGAACTAAGGGAAAAGGATCAACTTCTGCTTTTCTCTCTAATATCTTACGAGCTGGAGG 399
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 300 TGGAACTAAGGGAAAAGGGTCAACTTCTGCTTTTGTCTCTAATATCTTACGAGCTGGAGG 359
Query 400 ATATTCTGTTGGTTGTTATTCTAGCCCACATATTCTGAGTATCAAAGAACGGATTTCTTG 459
|||||| |||||||||||||| |||||||||||| |||||||||||||||| || |||||
Sbjct 360 ATATTCAGTTGGTTGTTATTCGAGCCCACATATTTTGAGTATCAAAGAACGTATCTCTTG 419
Query 460 TAATGGAGAACCTGTCTCTGCTTCCACTCTTAATGATCTTTTCTATTCAGTCAAACCGAT 519
||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 420 TAATGGAGAGCCTGTCTCTGCATCCACTCTTAATGATCTTTTCTATTCAATCAAACCGAT 479
Query 520 TCTTGAACAGTCTATTCAAGAGGAAAATGGTTCTTTGAGTCATTTTGAGATTCTCACTGG 579
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TCTCGAACAGTCTATTCAAGAGGAAAATGGTTCTTTGAGTCATTTTGAGATTCTCACTGG 539
Query 580 GATAGCCTTCTCTTTATTTGAAAAGGAAAATGTCGACATTGCGGTTATAGAGGCTGGGCT 639
|||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 540 GATAGCTTTTTCTTTATTTGAAAAAGAAAATGTCGACATTGCGGTTATAGAGGCTGGGCT 599
Query 640 AGGAGGAGCTCGAGACGCTACAAATGTCATTGAAAGTTCAAATCTTGCTGCATCGGTCAT 699
||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 600 AGGAGGAGCTCGAGATGCTACAAATGTTATTGAAAGTTCCAATCTTGCTGCATCGGTCAT 659
Query 700 AACAACGATAGGTGAGGAACACATGGCAGCACTTGGGGGTTCCTTGGAAAGTATAGCAGA 759
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 660 AACAACGATAGGTGAGGAACACATGGCTGCTCTTGGGGGTTCCTTGGAAAGTATAGCAGA 719
Query 760 GGCTAAATCTGGAATTATTAAACACGGTCGCCCAGTGGTTTTAGGTGGACCGTTTCTTCC 819
||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 720 GGCCAAATCTAGAATTATTAAACACGGTCGCCCAGTGGTTTTAGGTGGGCCGTTTCTTCC 779
Query 820 TCATATCGAGGGCATTCTCCGTTCTAAAGCAGCTTCAG-TGTCGTCATCGGTTATTTTGG 878
|||||||||||| ||||| |||||||||||||| || | ||| |||||||||||||||||
Sbjct 780 TCATATCGAGGGTATTCTTCGTTCTAAAGCAGCATC-GATGTTGTCATCGGTTATTTTGG 838
Query 879 CATCTAATATTGGATCTAGTTCTTCAATCAAAGGCATCATTAACAAAAATGGGATCGGGC 938
|||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||
Sbjct 839 CATCTAATATTGGATCTAGTTCGTCAATCAAAGACATCATCAACAAAAATGGGATCGGGC 898
Query 939 TTTGCCAGTCCTGTGACATCGTGATACAGAATGAGAAAGATGATCAACCAATTGTTGAGC 998
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 899 TTTGCCAGTCCTGTGACATCGTGATACAAAATGAGAAAGATGATAAACCAATTGTTGAGC 958
Query 999 TTAGTGATGTAAACCTACGTATGCTTGGACATCACCAGCTCCAAAATGCTGTTACTGCCA 1058
||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 959 TTAGTGATGTAAATCTACGCATGCTTGGGCATCACCAGCTCCAAAATGCTGTTACTGCCA 1018
Query 1059 CATGTGTGTCTCTTTGTCTTCGCGATCAAGGATGTGGGAGAGTGACAGATGAAGCAATTA 1118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 CATGTGTGTCTCTTTGTCTTCGCGATCAAGGATGTGGGAGAGTGACAGATGAAGCAATTA 1078
Query 1119 GGATTGGTTTAGAGAACACTCGTTTACTTGGGAGAAGTCAGTTTCTGACACCAAAAGAAG 1178
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 GGATTGGTTTAGAGAATACTCGTTTACTTGGGAGAAGTCAGTTTCTGACACCAAAAGAAG 1138
Query 1179 CAGAGACTTTACTATTACCCGGAGCAACAGTGCTTCTTGATGGAGCTCACACCAAAGAGT 1238
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1139 CAGAGACTTTACAATTACCCGGAGCAACAGTGCTTCTTGATGGAGCTCACACCAAAGAAT 1198
Query 1239 CAGCGCGAGCCCTCAAGGAGATGATAAAGAAGGATTTTCCAGAGAAAAG-ATTGGTATTT 1297
|||||||||| || ||||| ||||||||||| |||||| ||||||| || |||| | |||
Sbjct 1199 CAGCGCGAGCTCTAAAGGATATGATAAAGAAAGATTTTGCAGAGAAGAGGATTG-TGTTT 1257
Query 1298 GTGGTTGCCATGGCTAGTGACAAAGATCATGTGTCCTTTGCAAAAGAACTTCTCTCAGGT 1357
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 GTGGTTGCAATGGCTAGTGACAAAGATCATGTGTCCTTTGCAAAAGAACTTCTCTCAGGT 1317
Query 1358 CTAAAACCAGAAGCAGTGATTCTAACAGAAGCTGACATCGGTGGAGGTAAGATTAGATCA 1417
||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 1318 CTAAAGCCAGAAGCAGTGGTTCTAACAGAAGCTGACATTGGTGGAGGTAAGATTAGATCA 1377
Query 1418 ACGGAGTCTTCGGTGTTGAAAGAATCATGGATAAAAGCTGCTGATGAATTGGGGTCAAGG 1477
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1378 ACGTCGTCTTCGGTGTTGAAAGAATCATGGATAAAAGCTGCTGATGAATTGGGGTCAGGG 1437
Query 1478 TCTATGGAAGCTTCAGAAAACAAAACTGTGTTGGGTTCCTTAAAGCTTGCCTACAAGATA 1537
|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 1438 TCTATGGAAGCTTCAGAAAACAAAACTGTGTTGGATTCCTTAAAGCTTGCCTATAAGATT 1497
Query 1538 CTCAGCGATGACACAA-CAAGTAGTGACTCAGGAATGGTTATAGTCA-CGGGTTCGCTTC 1595
||||||||||||| || || |||||||||||||||||||||| | || ||||||| ||||
Sbjct 1498 CTCAGCGATGACAGAAGCA-GTAGTGACTCAGGAATGGTTATCG-CAACGGGTTCACTTC 1555
Query 1596 ACATTGTATCTTCAGTCTTAGCTTCTCTTCAACATTAA 1633
||||||||||||||||||||||||||||||||||||||
Sbjct 1556 ACATTGTATCTTCAGTCTTAGCTTCTCTTCAACATTAA 1593
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65515221400
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5