BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41490.1
Length=1164
Score E
Sequences producing significant alignments: (Bits) Value
Ahg345624 jgi|Araly1|345624|fgenesh1_pg.C_scaffold_4001966 704 0.0
Ahg345622 jgi|Araly1|345622|fgenesh1_pg.C_scaffold_4001964 689 0.0
Ahg934582 jgi|Araly1|934582|scaffold_402570.1 612 2e-174
Ahg947570 jgi|Araly1|947570|scaffold_703799.1 573 9e-163
Ahg314297 jgi|Araly1|314297|fgenesh1_pm.C_scaffold_1003077 272 4e-72
Ahg930411 jgi|Araly1|930411|scaffold_302868.1 228 8e-59
Ahg925743 jgi|Araly1|925743|scaffold_201304.1 219 5e-56
Ahg908078 jgi|Araly1|908078|Al_scaffold_0002_1159 152 5e-36
Ahg929147 jgi|Araly1|929147|scaffold_301604.1 52.8 5e-06
> Ahg345624 jgi|Araly1|345624|fgenesh1_pg.C_scaffold_4001966
Length=2085
Score = 704 bits (381), Expect = 0.0
Identities = 939/1194 (79%), Gaps = 95/1194 (8%)
Strand=Plus/Plus
Query 1 ATGGCGACAATGATC-ACCAATCTTCGAAGGGATTTGATAGAGGAGATTATATCTAGGGT 59
||| |||| |||||| | | |||||| |||||||||||||||||||||| | |||||| |
Sbjct 1 ATGACGACGATGATCTA-CGATCTTCCAAGGGATTTGATAGAGGAGATTCTTTCTAGGCT 59
Query 60 TCCCTTGAGATCTATGAAAGCAGTAAGATTAACTTGCAAAAGTTGGAATAATATATCCAA 119
|||||||| ||||||||||||||| || ||||| |||||||||||||| ||| ||| | |
Sbjct 60 TCCCTTGAAATCTATGAAAGCAGTGAGGTTAACATGCAAAAGTTGGAACAATTTATTC-A 118
Query 120 AAGTGAGATCTTCACGAAGATGCAGATTGATAAAGCAACAACTAGAGAAGGGAAGACTAT 179
|| || | | ||| | | | || || |||| ||||||||| |||||||
Sbjct 119 AA---AG----T-A--AAG-T----A---A-CAA-CACCAACAAGAGAAGGGGAGACTAT 158
Query 180 GATGAT-ATC-GG-TGATGCCTCACAATCTTTCTTTAATGAGCGTCGCCGTCGACGACGT 236
|||||| || || |||||||| ||| | ||| ||||||||||| | | ||| ||| ||
Sbjct 159 GATGATCTTCAGGATGATGCCTGACAGTTTTTGTTTAATGAGCG--G-CATCGTCGATGT 215
Query 237 TGATCCATCCGTAGAGTTTAAAGGTCAGCTTAGTTTTCTTTGTAATC-AAGTCAGTATA- 294
||||||||| ||||| ||||||||| ||||| |||| || | | | |||||||| ||
Sbjct 216 TGATCCATCTATAGAGCGTAAAGGTCAACTTAG-TTTCCTT-T-A-CAAAGTCAGTGTAT 271
Query 295 CATA-AAGTTATCCATTGTGAGGGTTT-GTTGTTATGCTTCTTGAAAGACCATACTAGGG 352
| || || ||| ||| | ||||||||| || |||||| ||||||||| || |||||
Sbjct 272 C-TAGAATTTA-CCACTATGAGGGTTTAATT-TTATGCAAATTGAAAGACGTTAATAGGG 328
Query 353 TTGTGGTTTGGAATCCGTATTCCGGGCAAACAAGGTGGGTCAAACTCAGATATCCCCACC 412
|| ||||||||||||| |||| ||||||||||||||| |||| ||||| ||| | || |
Sbjct 329 TTATGGTTTGGAATCCCTATTTGGGGCAAACAAGGTGGATCAACCTCAGGTATTCTCA-C 387
Query 413 CTCCAAGTCCAAGCAAATGGGATTGGTTCAGATATGCCCTTGGATACGAGGATAAAGG-A 471
|| | | | || | || | ||| ||| ||||| || |||||||||||| |||| |
Sbjct 388 CT-C-A-T--AAACGGATTCAACAGGTACAGTTATGCTCTCGGATACGAGGAT-AAGGAA 441
Query 472 TCTTGTCGTAGCGTTAAATTCTTAAGGTTTTTAGATTATTTACCT-GAAGAACCAGAAAA 530
||||| |||||||||||||| || ||||||||||||||||| | | | | ||| | |||
Sbjct 442 TCTTGCCGTAGCGTTAAATTGTTGAGGTTTTTAGATTATTT-CTTCCATGCACCCG-AAA 499
Query 531 C-CAAAATGTTTGCTATGAAATCTATGATTTTGACTCTGATTTATGGACAACTCTTGATG 589
| ||| | |||| ||||||||||| |||||||| |||| |||||||| ||| |||||||
Sbjct 500 CACAATTTTTTTGGTATGAAATCTACGATTTTGATTCTGGTTTATGGAAAACCCTTGATG 559
Query 590 TCACTTCACACTCGTGG-ATATGTTATTCTAGCTGTGGCGTGTT-TCTCAAGGGAAACGC 647
||||| || ||| | || |||| || ||| ||| | |||| || ||| ||||| ||| |
Sbjct 560 TCACTCCAAACT-GGGGTATATATTGTTCAAGCCCTAGCGT-TTCTCTTAAGGGTAACAC 617
Query 648 TTACTGGCCTG-TTGTAAAAAGTAGCTCAGAAGCTAACATCGATCACATAATCTATTTTG 706
||||||| || | || ||||| |||||||||| | || ||||| ||||| | |||||
Sbjct 618 TTACTGGTGTGCTAGT-AAAAGGAGCTCAGAAGGTTGTATGGATCATATAATATGTTTTG 676
Query 707 ACTTTACAAGAGAGA-GTTTCGGGCCGCCTCTACCTTTACCGTTTGGCGCTACAGATCGT 765
| ||||||| ||||| |||| ||||||| ||||||| | |||| | ||| || ||||||
Sbjct 677 ATTTTACAAAAGAGAGGTTT-GGGCCGCTTCTACCTCTGCCGTCTAGCGTTAGGGATCGT 735
Query 766 GGATAT-TCATATGTGAATTTATCTTGTGTTAAAGAAGAGAAGCTTGCAGCtttttttCA 824
|||| | ||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 736 AAATATAT-ATATGTGAATTTATCTTGTGTTAAAGAAGAGAAGCTTGCAGCTTTATTCCA 794
Query 825 GCAC--T-ACATTTCATATAAA-TATGAATTTGAGATATGGGTTACGACTAAGATTGAGG 880
|| | | | || |||| || | | | |||||||||||| ||||||||||||||||||
Sbjct 795 GCGCCCTGA-AT--CATACGAACTTT-ATTTTGAGATATGGATTACGACTAAGATTGAGG 850
Query 881 CCGAAATGGTGTCGTGGAGCAAATTCTTGAGAATGGATTTGGGACCTAATATAGATATTC 940
|||||||||||||||||||||| ||||||||||| ||| ||||||||| || || |||
Sbjct 851 CCGAAATGGTGTCGTGGAGCAAGTTCTTGAGAATCGATACGGGACCTAAGGTAAATGTTC 910
Query 941 CAATTACTTTCTTCATTGACGAGGAGAAGAAAGTTTTCATGGGTTTT-G-A--G-C-ATA 994
|| || |||||| |||||||||||||||||||| |||||||||||| | | | | |||
Sbjct 911 CAGGTAGTTTCTTGATTGACGAGGAGAAGAAAGTCTTCATGGGTTTTTGTACAGACTATA 970
Query 995 -----GA----GA--A-TATCCCAAGAGATTTATTAACATCATCGGAGAGGCTAAATATT 1042
|| || | | |||||| | ||||||||||||||| ||||||||| ||| |
Sbjct 971 ACTCCGACTATGACGACTGTCCCAAAAAATTTATTAACATCATTGGAGAGGCTGGATACT 1030
Query 1043 TAA-GAAAATTGGATCTCCAAGTACCT-CA-AGGCCAATACTGTTGCCCACCTTTGTGCT 1099
||| |||| ||||||||| ||||||| || | |||| || ||| | | | ||||||
Sbjct 1031 TAAAGAAA-TTGGATCTCGGAGTACCTGCATA--CCAAAACCATTGGCTAGATGTGTGCT 1087
Query 1100 CTTATGTTCCAAGTTCGATCCAAATCAAGAAACCTGCACTGAGGCAAAAAGATA 1153
||||||||||||||| | |||| |||||||||| ||||| ||||||||| ||||
Sbjct 1088 CTTATGTTCCAAGTTTGGTCCAGATCAAGAAACTTGCAC-GAGGCAAAAGGATA 1140
> Ahg345622 jgi|Araly1|345622|fgenesh1_pg.C_scaffold_4001964
Length=1383
Score = 689 bits (373), Expect = 0.0
Identities = 950/1214 (78%), Gaps = 98/1214 (8%)
Strand=Plus/Plus
Query 1 ATGGCGACAATGATCACCAATCTTCGAAGGGATTTGATAGAGGAGATTATATCTAGGGTT 60
||| ||||||||||| ||||||||| || ||||||||| ||||| ||| | || ||| ||
Sbjct 1 ATGACGACAATGATCTCCAATCTTCCAAAGGATTTGATCGAGGAAATTCTTTCGAGGCTT 60
Query 61 CCCTTGAGATCTATGAAAGCAGTAAGATTAACTTGCAAAAGTTGGAATAATATATCCAAA 120
||| || ||||||||||||||| ||||||||||||||||||||||| ||| ||||||||
Sbjct 61 TCCTGGAAATCTATGAAAGCAGTGAGATTAACTTGCAAAAGTTGGAACAATTTATCCAAA 120
Query 121 AGTGAGATCTTCACGAAGATGCAGATTGATAAAGCAACAACTAGAGAAGGGA-AGACTAT 179
||||||| | | | | |||| |||| |||| | |||||| ||| || ||||
Sbjct 121 AGTGAGA---T------G-T--ACATTGGTAAATCAAC-A--AGAGAA-GGACAGTCTAT 164
Query 180 GATGATATCGGTGATGCCTCACAATCTTTCTTTAATGAGCGTCGCCGTCGACGACGTTGA 239
|||||| || |||||||||||||||||| | |||||||| | | ||||| |||||||||
Sbjct 165 GATGATCGCGATGATGCCTCACAATCTTTATCTAATGAGC-T-G-CGTCGTCGACGTTGA 221
Query 240 TCCATCCGTAGAGTTTAAAGGTCAGCTTAGTTTTCTTTGTAATCAAGTCAGTATA-CATA 298
|||||| ||||| ||||||||| |||||||| ||| |||||||| || ||| | |
Sbjct 222 TCCATCTATAGAGCATAAAGGTCAACTTAGTTTCCTTCACAATCAAGTTAGCATATC-TC 280
Query 299 AAGT-TATCCATTGTGAGGGTTT-GTTGTTATGCTTCTTGAAAGACCATACTAGGGTTGT 356
||| | | || | ||||||||| || |||||| ||||||||||| ||||||| ||||
Sbjct 281 GAGTCT-TTCACTATGAGGGTTTAATT-TTATGCATCTTGAAAGACGTTACTAGGATTGT 338
Query 357 GGTTTGGAATCCGTATTCCGGG-CAAACAAGGTGGGTCAAACTCAGATATCCCCACCCTC 415
||||| ||||||||||| ||| |||||||||||| |||||||||||| | | ||| |
Sbjct 339 GGTTTTGAATCCGTATT-TGGGCCAAACAAGGTGGATCAAACTCAGATTTTCTCACTGT- 396
Query 416 CAAGTCCAAGCAAATGGGATTGGTTCAGATATGCCCTTGGATACGAGGATAAAGGATCTT 475
||| | ||| | || | | |||||| ||||| || || |||||| |||||| |||||
Sbjct 397 CAA--CAAAG-ATTTGACA-T-GTTCAGTTATGCTCTCGGTTACGAGCATAAAGAATCTT 451
Query 476 GTCGTAGCGTTAAATTCTTAAGGTTTTTAGATTA-TT-TACCTGAAGAACCAGAAAACCA 533
||||||| |||||||||| |||||| ||||||| || || | ||| ||| | |||| |
Sbjct 452 GTCGTAGTTTTAAATTCTTGAGGTTTATAGATTATTTCTA-C-AAAGCACCCG-AAACGA 508
Query 534 AA-ATGTTTGCTATGAAATCTATGATTTTGACTCTGATTTATGGACAACTCTTGATGTCA 592
|| | |||| ||||||||||| |||||||| |||| || ||||| |||||||||||||
Sbjct 509 AATTTTTTTGGTATGAAATCTACGATTTTGATTCTGGTTCATGGAGTACTCTTGATGTCA 568
Query 593 CTTCACACTCGTGGATATGTTATTCTAGCTG-TGGCGTGTT-TCTCAAGGGAAACGCTTA 650
|| |||||| || |||| || ||| ||| | | |||| || ||| |||||||| | ||
Sbjct 569 CTCCACACTGGTTTATATCTTGTTCAAGC-GATAGCGT-TTCTCTTAAGGGAAATACCTA 626
Query 651 CTGGCCTGTTG-TA-A-AAAGTA--GCTCAGAA-GCTAACATCGATCACATAATCTATTT 704
|||| || || || | |||| | || | || | | | |||||||||||||| |||
Sbjct 627 CTGG--TG-TGCTAGAGAAAGGACCCCTGAAAACGGTCTCCGCGATCACATAATCTGTTT 683
Query 705 TGACTTTACAAGAGAGAG-TTTCGGGCCGCCTCTACCTTTACCGTTTGGCGCTACAGATC 763
||| |||||||||||||| ||| ||||||| ||||||| | ||| || || ||| ||||
Sbjct 684 TGATTTTACAAGAGAGAGATTT-GGGCCGCTTCTACCTCTGCCGGTTAACGTTACTGATC 742
Query 764 GTGGA-TATTCATA-TGTGAATTTATCTTGTGTTAAAGAAGAGAAGCTTGCAGCtttttt 821
| || || | || ||||| ||||||||||||||||||||||||| ||||||| || ||
Sbjct 743 AT-GACTA-TGGTATTGTGACTTTATCTTGTGTTAAAGAAGAGAAGATTGCAGCCTTATT 800
Query 822 tCAGCACTACATTTCATATAAATATGAATTTGAGATATGGGTTACGACTAAGATTGAGGC 881
|||||||||| |||| | | | ||| ||||| |||||| |||||||||||||||||||
Sbjct 801 TCAGCACTACGCATCATTTGATTCTGAGTTTGAAATATGGATTACGACTAAGATTGAGGC 860
Query 882 CGAAATGGTGTCGTGGAGCAAATTCTTGAGAATGGATTTGG-GACCTAATATAGATATTC 940
||||||||||||||||||||| ||||||||||||||| | | ||||| ||| | |||
Sbjct 861 CGAAATGGTGTCGTGGAGCAAGTTCTTGAGAATGGATACGAAG-CCTAAGATATTTTTTC 919
Query 941 CA-ATTACTTTCTTCATTGACGAGGAGAAGAAAGTTTTCATGGGT-TT--T-GAG-C-AT 993
|| || |||||||||||||| || ||||||||||| ||||||| | || | ||| | ||
Sbjct 920 CAGAT-ACTTTCTTCATTGATGAAGAGAAGAAAGTCTTCATGGATGTTGGTAGAGACTAT 978
Query 994 -A-G--A---G--A--AT-A-T--------CCCAAGAGATTTATTAACATCATCGGAGAG 1032
| | | | | || | | ||||| | ||| ||| ||||||| ||||||
Sbjct 979 GAAGGTAATTGGGACTATGACTATGAATATCCCAAAACATTAATTTACATCATTGGAGAG 1038
Query 1033 GCTAAATATTT-AAGAAAATTGGATCTCCA-AGTACCTCAAGGCCAATACTGTTGCCCAC 1090
||| || || || ||||||||||| || | ||||| || |||| || |||| ||||
Sbjct 1039 GCTGGGTACTTCAA-AAAATTGGATC-CCGGATTACCT-AA--CCAAAACCGTTGGCCAC 1093
Query 1091 CTTTGTGCTCTTATGTTCCAAGTTCGATCCAAATCAAGAAACCTGCACTGAGGCAAAAAG 1150
| ||||||||||||||||||||| | |||| |||||||||| ||||| ||||||||| |
Sbjct 1094 GTGTGTGCTCTTATGTTCCAAGTTTGGTCCAGATCAAGAAACTTGCAC-GAGGCAAAAGG 1152
Query 1151 ATAGAGCAAAATAG 1164
||||| |||| |||
Sbjct 1153 ATAGAACAAAGTAG 1166
> Ahg934582 jgi|Araly1|934582|scaffold_402570.1
Length=1276
Score = 612 bits (331), Expect = 2e-174
Identities = 923/1196 (77%), Gaps = 91/1196 (8%)
Strand=Plus/Plus
Query 1 ATGGCGACAATGATCACCAATCTTCGAAGGGATTTGATAGAGGAGATTAT-ATCTAGGGT 59
||| |||| |||||| | ||||||| || || |||||||||||||||| | || ||||||
Sbjct 21 ATGACGACGATGATCTCTAATCTTCCAACGGTTTTGATAGAGGAGATTTTAAT-TAGGGT 79
Query 60 TCCCTTGAGATCTATGAAAGCAGTAAGATTAACTTGCAAAAGTTGGAATAATATATCCAA 119
||| |||| |||| ||| |||||| |||||||||||||||| |||||| | | |||||||
Sbjct 80 TCCTTTGAAATCTTTGAGAGCAGTGAGATTAACTTGCAAAATTTGGAACACTCTATCCAA 139
Query 120 AAGTGA-GATC-TTCACGAAGATGCAGATTGAT-AA--AGC-A-A-CAACTAGAGAAG-G 170
||| | || | ||| |||| || | |||| | || ||| | | |||| ||||||| |
Sbjct 140 TAGT-AGGAGCTTTC-TGAAGTTGTACATTGGTAAACCAGCAACAGCAACAAGAGAAGAG 197
Query 171 GAAGACTATGATGATATCGGTGATGCCTCACAATCTTTCTTTAATGAGCGTCGCCGTCGA 230
| | |||||||| | || ||||| | |||||| || |||||| |||| || ||
Sbjct 198 G-ATTCTATGATGGTCGCGATGATGAATTTTGATCTTTATTCAATGAGGGTCGTAGTTGA 256
Query 231 CGACGTTGATCCATCCGTAGAGTTTAAAGGTCAGCTTAGTTTTCTTTGTA-ATCAAGTC- 288
||||||||||||||| ||| ||||||| || | | ||| |||| ||| | | ||||||
Sbjct 257 CGACGTTGATCCATCTATAGCGTTTAAACGTAAACCTAG-TTTCCTTGAAGAACAAGTCA 315
Query 289 A-GTATACATAAAGT-TATCCATTGTGAGGGTTTGTTGTTATGCTTCTTGAAAGACCATA 346
| |||| | | |||| | | || ||||||||||| ||| ||||| |||| |||||| |||
Sbjct 316 AGGTAT-C-TCAAGTCT-TTCACTGTGAGGGTTTATTGCTATGCATCTTCAAAGACAATA 372
Query 347 CTAGGGTTGTGGTTTGGAATCCGTATTCCGGGCAAACAAGGTGGGTCAAACTC-AGATAT 405
||| ||||||||||||||||||||||| |||| ||||||||||| || ||| | |||| |
Sbjct 373 CTAAGGTTGTGGTTTGGAATCCGTATTGCGGGGAAACAAGGTGGATCGAAC-CAAGATTT 431
Query 406 CCCCACCCTCCAAGTCCAAGCAAATGGGATTGGTTCAGATATGCCCTTGGATACGAGGAT 465
| || | | ||||||| ||||| ||||||| ||||| || |||||| |||||
Sbjct 432 TCTCA---T-C--GTCCAAGGGGGTGGGACAGGTTCAGTTATGCTCTAGGATACAAGGAT 485
Query 466 AAAGG-ATCTTGTCG-TAGCGTTAAATTCTTAAGGTTTTTAGATTATTTACCTG--AAGA 521
|||| ||||||| | |||| |||||||||| ||||| |||||||||| ||| |
Sbjct 486 -AAGGAATCTTGT-GATAGCTTTAAATTCTTGAGGTTCATAGATTATTT--CTGCTTTGC 541
Query 522 ACCAGAAAACCAAAATGTTTGCTATGAAATCTATGATTTTGACTCTGATTTATGGACAAC 581
||| ||||| ||| | |||| |||||||||||||||||||||||||||| |||||||||
Sbjct 542 ACCCGAAAATCAATTTTTTTGGTATGAAATCTATGATTTTGACTCTGATTCATGGACAAC 601
Query 582 TCTTGATGTCACTTCACACTCGTGGATA-TGTTATTCTAGC-TGTGGCGTGTT--TCTCA 637
||||||||||||| || ||| ||| ||| |||| | ||| | | ||| | || |||||
Sbjct 602 TCTTGATGTCACTCCAAACTGGTGTATAATGTT-TGCTAACCT-TGG--TATTACTCTCA 657
Query 638 AGGGAAACGCTTACTGGCCTGTTGTAAAAAGTAGCTCAGAAGCTAACAT--C-GATCACA 694
| |||||| |||||||| || || |||| | |||||||| | | || | |||||||
Sbjct 658 AAGGAAACACTTACTGGTGTGCTGGGGAAAGGAACTCAGAAGATGATATTGCCGATCACA 717
Query 695 TAATCTATTTTGACTTTACAAGAGAGAG-TTTCGGGCCGCCTCTACCTTTACCGTTTGGC 753
|||||| |||||| |||||||| ||||| ||| || |||| | ||||| | ||| | ||
Sbjct 718 TAATCTGTTTTGATTTTACAAGCGAGAGATTT-GGACCGCTTTTACCTCTGCCGACTAGC 776
Query 754 GCTACAG--ATCGTG-GATATTCATATGTGAATTTATCTTGTGTTAAAGAAGAGAAGCTT 810
| | ||| ||| || | ||| |||||||| |||||||||||||| ||||||||||||
Sbjct 777 G-T-CAGGGATCATGAG-TATGAATATGTGACTTTATCTTGTGTTAGGGAAGAGAAGCTT 833
Query 811 GCAGCtttttttCAGCACTAC-ATTTCATATAAATATGAATTTGAGATATGGGTTACGAC 869
|||||||| ||||||||| || | | || || ||||| ||||||||||| |||| ||
Sbjct 834 GCAGCTTTATTTCAGCACAACGAAT-CAAATCCGTATGAGCTTGAGATATGGATTACAAC 892
Query 870 TAAGATTGAGGCCGAAATGGTGTCGTGGAGCAAATTCTTGA-GAATGGATTTGGGACCTA 928
| ||||| | ||||||||||||||||||||||| ||||||| || ||||| |||||||
Sbjct 893 TGAGATTAATGCCGAAATGGTGTCGTGGAGCAAGTTCTTGATGA-TGGATACCGGACCTA 951
Query 929 ATATAGATATTCCA---AT-T---AC--TTTCTTCATTGACGAGGAGAAGA-AAGTTTTC 978
||||| ||||| || | | ||||||||||||||||||||||| || |
Sbjct 952 GGATAGAGGTTCCACTTATATGGGAAGGTTTCTTCATTGACGAGGAGAAGAGAAACGC-C 1010
Query 979 ATGGGTTTTGA-GCATAGAGAAT-A-TCCCAAGAGATTTATTAACATCATCGGAGAGGCT 1035
||||||||||| | | |||| | | || || | |||||| |||||| |||||||||
Sbjct 1011 ATGGGTTTTGACG-A-AGAGT-TCAGTCGTAAAACATTTAT---CATCATTGGAGAGGCT 1064
Query 1036 AAATATTTAAGAAAATTGGATCTCCAAGTACCTCA-AGGCCAATACTGTTGCCCACCTTT 1094
||| |||||||||||||| | |||| || || | | ||| | ||| |
Sbjct 1065 GGATACGTAAGAAAATTGGATATTGGAGTAGA-CATAG---A-T--TGTCGACCAAAAGT 1117
Query 1095 GTGCTCTTATGTTCCAAGTTCGATCCAAATCAAGAAACCTGCACTGAGGCAAAAAG 1150
|||||||||||||||||||| | |||||||||||||||||||| |||| ||||||
Sbjct 1118 GTGCTCTTATGTTCCAAGTTTGGTCCAAATCAAGAAACCTGCAG-GAGG-AAAAAG 1171
> Ahg947570 jgi|Araly1|947570|scaffold_703799.1
Length=1097
Score = 573 bits (310), Expect = 9e-163
Identities = 526/624 (84%), Gaps = 39/624 (6%)
Strand=Plus/Plus
Query 544 TATGAAATCTATGATTTTGACTCTGA-TTTATGGACAACTCTTGATGTCACTTCACACTC 602
||||||||||| |||||||||||| | ||||||||||||||||||||||||| ||||||
Sbjct 465 TATGAAATCTACGATTTTGACTCT-AGTTTATGGACAACTCTTGATGTCACTCCACACTG 523
Query 603 GTGGATATGTTATTCTAGCTGTGGCGTGTT-TCTCAAGGGAAACGCTTACTGGCCTGTTG 661
|||||||| || ||||||| |||||| || ||| ||||||||| |||||||||||| |
Sbjct 524 GTGGATATCTTGCTCTAGCTATGGCGT-TTCTCTTAAGGGAAACACTTACTGGCCTG-CG 581
Query 662 TAAAAAGTAGCTCA-GAAGCTAACATCGATCACATAATCTATTTTGACTTTACAAGAGAG 720
||||| |||||| | | | | ||||||||||||||| |||||| ||||||||||||
Sbjct 582 --AAAAGGAGCTCACG-TGGTCTCTTCGATCACATAATCTGTTTTGATTTTACAAGAGAG 638
Query 721 AGTTTCGGGCCGCCTCTACCTTTACCGTTTGGCGCTACAGATCGTGGATATTCATATGTG 780
||||||||||||| ||||||||| |||||||||||||| |||||||||||| ||||||||
Sbjct 639 AGTTTCGGGCCGCTTCTACCTTTGCCGTTTGGCGCTACGGATCGTGGATATCCATATGTG 698
Query 781 AATTTATCTTGTGTTAAAGAAGAGAAGCTTGCAGCtttttttCAGCACTAC-ATTTCATA 839
| |||||||||||||||||||||||||||||||||||| |||||||| ||| | | ||||
Sbjct 699 ACTTTATCTTGTGTTAAAGAAGAGAAGCTTGCAGCTTTATTTCAGCAATACTACT-CATA 757
Query 840 -T--AAATATGAATTTGAGAT--ATG---GG-TTACGACTAAGATTGAGGCCGAAATGGT 890
| |||| ||||| |||||| || || |||||||||||||||| || ||||||||
Sbjct 758 CTGCAAATGTGAATATGAGATTGATATATGGATTACGACTAAGATTGAAGCTGAAATGGT 817
Query 891 GTCGTGGAGCAAATTCTTGAGAATGGATTTGGGACCTAATATAGATATTCCAATTACTTT 950
|||||||||||| |||||||||||| || | |||||||||| ||| ||||||| |||
Sbjct 818 GTCGTGGAGCAAGTTCTTGAGAATGAATACGAAACCTAATATA--TAT-CCAATTATTTT 874
Query 951 CTTCATTGACGAGGAGAAGAAAGTTTTCATGGGTTTTGAGCATAGAGAATATCCCAAGAG 1010
| |||||||||||||||||||| |||||||| || |||| |||||||| ||||||||
Sbjct 875 CCTCATTGACGAGGAGAAGAAAATTTTCATGAGTCTTGA---TAGAGAATTTCCCAAGAC 931
Query 1011 ATTTATTAACATCA-TCGGAGAGGCTAAATATTTAAGAAAATTGGATCTCCA-AGTACCT 1068
|||| |||||| | | | |||||||||||| || | | ||||| | |||| ||
Sbjct 932 ATTTCTTAACACCGCTAG-AGAGGCTAAATACTT--G------G-ATCTC-AGAGTATCT 980
Query 1069 CAAGGCCAATACTGTTGCCCACCTTTGTGCTCTTATGTTCCAAGTTCGATCCAAATCAAG 1128
| |||||||||||| | |||||| ||||||||||||||||||||| | |||||||||||
Sbjct 981 GACGGCCAATACTGTCGGCCACCTGTGTGCTCTTATGTTCCAAGTTTGGTCCAAATCAAG 1040
Query 1129 AAACCTGCACTGAGGCAAAAAGAT 1152
|||||| ||||||||||||| |||
Sbjct 1041 AAACCTACACTGAGGCAAAAGGAT 1064
> Ahg314297 jgi|Araly1|314297|fgenesh1_pm.C_scaffold_1003077
Length=1167
Score = 272 bits (147), Expect = 4e-72
Identities = 412/532 (77%), Gaps = 49/532 (9%)
Strand=Plus/Plus
Query 539 TTTGCTATGAAATCTATGATTTTGACTCTGATTTATGGACAACTCTTGATGTCACTTCAC 598
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 542 TTTGGTATGAAATCTATGATTTTAACTCTGATTTATGGACAACTCTTGATGTCACTCCAT 601
Query 599 ACTCGTGGATATGTTATT-CT-AGCTGTGGCGTGTTTC--TCAAGGGAAACGCTTACTGG 654
||| || ||| | |||| || | |||| |||||| ||| ||||||| | ||||||
Sbjct 602 ACTGGTTTATA-GCTATTTCTCAAA-GTGG--TGTTTCCCTCATGGGAAACACATACTGG 657
Query 655 CCTGTT-GTAAAAAGTAGCT-CAGAAGCTAACATCGATCACATAATCTATTTTGACTTTA 712
|| | | | || | ||| | | | || | ||||||||| || | |||||| ||||
Sbjct 658 TGTGCTAGGATAAGG-AGCGGC-G--GTTAT-AGCGATCACATTATTTGTTTTGATTTTA 712
Query 713 CAAGAGAGAG-TTTCGGGCCGCCTCTACCTTTACCGTTTGGCGCTACAGATCGTGGATAT 771
|||||||||| ||| || |||| | | ||||| || ||| ||| || |||| || |
Sbjct 713 CAAGAGAGAGATTT-GGACCGCTTTTGCCTTTGCCATTTAGCGTTAGGGATC----AT-T 766
Query 772 TCATATGTGAATTTATCTTGTGTTAAAGAAGAGAAGCTTGCAGCtttt-tttCAGCACTA 830
||| ||||| |||||||||||||| ||||||||||||||||| |||| ||||| ||| |
Sbjct 767 -CATGTGTGATTTTATCTTGTGTTAGAGAAGAGAAGCTTGCAG-TTTTATTTCAACACCA 824
Query 831 CATTTCAT-ATAAATATGAATTTGAGATATGGGTTACGACTAAGATTGAGGCCGAAATGG 889
|| | || ||||||||||| |||| |||||| ||||| |||| ||||| |||||||||
Sbjct 825 AATGT-ATTATAAATATGAAGTTGAAATATGGATTACGGTTAAGCTTGAGACCGAAATGG 883
Query 890 TGTCGTGGAGCAAATTCTTGAGAATGGATTTGGGACCTAAT-ATAGATATTCCAATTACT 948
||||||||||||| ||||||||||| || ||| || ||| ||| | | | || | |
Sbjct 884 TGTCGTGGAGCAAGTTCTTGAGAATAAATACGGGGCC-AATTATACACA--C-AAGT--T 937
Query 949 TTCTTCATTGACGAGGAGAAGAAAGTTTTCAT-GGGTTTTGAGCATAGAGAATATCCCAA 1007
| ||||||||||||||| |||||||| ||| |||||| | || || ||| | |||
Sbjct 938 T-CTTCATTGACGAGGAAAAGAAAGTCGCCATTGGGTTT--A--AT-GACAAT--CGCAA 989
Query 1008 GAGATTTATTAACATCATCGGAGAGGCTAAATA-TTTAAGAAAATTGGATCT 1058
| | ||||||||||| ||||||||| ||| |||| || ||||||||||
Sbjct 990 -ACA---ATTAACATCATTGGAGAGGCTGGATACTTTA-GAGAATTGGATCT 1036
> Ahg930411 jgi|Araly1|930411|scaffold_302868.1
Length=1141
Score = 228 bits (123), Expect = 8e-59
Identities = 586/795 (74%), Gaps = 90/795 (11%)
Strand=Plus/Plus
Query 313 GAGGGTTTGTTGTTATGCTTCTTGAAAGACCATACTAGGGTTGTGGTT-TGGAATCCGTA 371
||||| || ||| ||||| | |||||||| || ||||| |||||||| | |||||||||
Sbjct 198 GAGGGCTTATTGCTATGCATATTGAAAGAAGATTCTAGGTTTGTGGTTCT-GAATCCGTA 256
Query 372 TTCCGGGCAAACAAGGTGGGTCAAACTC-AGATATCCCCACCCTCCAAGTCCA-AGCAAA 429
|| ||||||||||||||| || ||| | |||||| |||| | | ||||| | | |
Sbjct 257 TTTGGGGCAAACAAGGTGGATCGAAC-CAAGATATTCCCA---T-C--GTCCATA-CGGA 308
Query 430 TGGGATTGGTTCAGATATGCCCTTGGATACGAGGATAAAGG-ATCTTGTCGTAGCGTTA- 487
|| || |||| || ||||| || ||||||| | || |||| ||||||||||||| ||
Sbjct 309 TGTGACAGGTTTAGTTATGCTCTCGGATACGTGAAT-AAGGAATCTTGTCGTAGC--TAC 365
Query 488 AA-TTCTTAAGGTTTTTAGATTATTTACCT-GAA-GAACCAGAAAACCAAAAT-GTTTGC 543
|| || || |||||| |||||||||| || || | ||| ||||| | | | ||||
Sbjct 366 AAGTTATTGAGGTTTATAGATTATTT--CTACAATGTACCCGAAAAGC-AGTTCTTTTGG 422
Query 544 TATGAAATCTATGATTTTGACTCTGATTTATGGACAACTCTTGATGTCA-CTTCACACTC 602
||||||||||||||||||||||||||||||||||| ||||||||| | | || |||| |
Sbjct 423 TATGAAATCTATGATTTTGACTCTGATTTATGGACGACTCTTGATAT-ATCTCCACATTG 481
Query 603 GTGGATATG--TTATTCTAGCTGTGGCGTGTT-TCTCAAGGGAAACGCTTACT---G-GC 655
| | ||| | || || || | ||||||| || ||| ||||||||| |||||| | ||
Sbjct 482 GCGTATA-GCATT-TTGTAACCGTGGCGT-TTCTCTTAAGGGAAACACTTACTTTTGTGC 538
Query 656 CTGTTGTAAA--AA-GTAGCTC-AGAAGCTAA--CATCG--A-TCA-CATAATCTATTTT 705
|| || ||| || |||| | | ||| || | | | | | | | |||||| |||
Sbjct 539 -TGCTG-AAAGGAACGTAGATGTAAAAG--AAGTCTTGGCCAAT-AGCTTAATCTGTTTC 593
Query 706 GACTTTACAAGAGAGAG-TTTCGGGCCGCCTCTACCTTTACCGTTTGGCGCTACAG-ATC 763
|| |||||||| ||||| ||| || |||| ||| ||| | |||||| | | | | |||
Sbjct 594 GATTTTACAAGTGAGAGATTT-GGTCCGCTTCTGCCTCTGCCGTTTAGTGGTGG-GTATC 651
Query 764 GTGGATATTCATATGTGAATTTATCTTGTGTTAAAGAAGAGAAGCTTGCAGCttttt-tt 822
|| | | ||| | | || |||||||||| ||||||||||||||| |||||| ||
Sbjct 652 ATG-AC-T--ATACGACA-TTG-TCTTGTGTTAGAGAAGAGAAGCTTGC-GCTTTTACTT 704
Query 823 CAGCACTAC-ATTTCATATAAATATGAATTTGAGATATGGGTTACGACTAAGATTGAGGC 881
|||||| | | | || || |||||| |||| ||||| ||||||||||||||||| |
Sbjct 705 CAGCACGATGAAT-CAAATCCATATGAGCTTGACTTATGGATTACGACTAAGATTGAGAC 763
Query 882 CGAA-ATGGTGTCGTGGAGCAAATTCTTGAGAATGG-ATTTG--GGACCTAATA-TAGAT 936
||| | ||||| ||||||||| ||| ||||| ||| | | ||| | ||| | ||
Sbjct 764 TGAAGA-GGTGTTGTGGAGCAAGTTCGTGAGAGTGGCAACAGCTGGATTTGATAGTT-AT 821
Query 937 ATTCCA---AT---T--AC-TTTCTTCATTGACGAGGAGAAGAAAGTTTTCATGGGTTTT 987
||||| || | | ||||||||||||||||||||||||||| ||| ||||||
Sbjct 822 GTTCCATTTATAGGTGGAAGTTTCTTCATTGACGAGGAGAAGAAAGTCGCCATTGGTTTT 881
Query 988 GA-GCATAGAGAATA-TC-CCAAGAGATTTATTAACATCATCGGAGAGGCTAAATATTTA 1044
|| | || | || || || ||| | | ||||||||||| ||||||||| ||| ||
Sbjct 882 GATG-ATGGGGA-TAATCGCCAC-ACA---ATTAACATCATTGGAGAGGCTGGATACTTC 935
Query 1045 AGAAAATTGGATCTC 1059
|| ||||||||||
Sbjct 936 AGGGCATTGGATCTC 950
> Ahg925743 jgi|Araly1|925743|scaffold_201304.1
Length=1229
Score = 219 bits (118), Expect = 5e-56
Identities = 853/1186 (72%), Gaps = 137/1186 (12%)
Strand=Plus/Plus
Query 19 AATCTTCGAAGGGATTTGATAGAGGAGATTATATCTAGGGTTCCCTTGAGATCTATGAAA 78
||||||| || ||||||| ||||||||||||| || |||||||| |||| || | ||| |
Sbjct 37 AATCTTCCAAAGGATTTGGTAGAGGAGATTATCTCAAGGGTTCCTTTGAAATGTTTGAGA 96
Query 79 GCAGTAAGATTAACTTGC-AAAAGTTGGAATAATATATCCAAAAG-TGAGATCTTCACGA 136
|| || ||||||||||| ||||| ||||| | | | |||||| | || ||| ||||
Sbjct 97 TCAATACGATTAACTTGCAAAAAG-TGGAACGCTTTGTTCAAAAGCCG-GAGCTTTACGA 154
Query 137 AGATGCAGATTGATAAAG--CAA-CAAC-T--AGAG-A--AGGGAAGACT-ATGATGATA 186
|||||| ||||| |||| || |||| | || | | |||| ||||| | |||| |
Sbjct 155 CGATGCACATTGACAAAGAAGAAGCAACATCAAGGGAATTAGGGCAGACTCA-GATG--A 211
Query 187 TCG-G-TGATGCCTCACAATCTTTCTTTAATGAGCGTCGCCGTCGACGACGTTGATCCAT 244
||| | ||||| | ||||| ||| ||||||| || | | ||| ||| | |||| |
Sbjct 212 TCGTGATGATGGATTACAATGTTTATTTAATGGGCAT-G--GTCCTCGATGAAAATCCTT 268
Query 245 CCGTAGAGTTTAAAGGTCAGCTTAGTTTTCT--TTG-T---AATCAAGTC-AGTATA-CA 296
|| ||||||| |||| | |||| || || || | || |||||| || ||| |
Sbjct 269 CCAAAGAGTTTCTAGGTAAACTTACTTGCCTAGATGATACAAAACAAGTCAAG-ATATC- 326
Query 297 TAAAGT-TATCCATTGTGAGGGTTTGTTGTTATGCTTCTTGAAAGAC---CATACTAGGG 352
| |||| | | |||||||||||||| ||||||||| ||||||||||| |||||| |
Sbjct 327 TCAAGTCT-TTCATTGTGAGGGTTTATTGTTATGCATCTTGAAAGACGATGATACTAAGA 385
Query 353 TTGTGGTTTGGAATCCGTATTCCGGGCAAACAAGGTGGGT-CAAACTCAG-A--TATCCC 408
||||||||||||||||||||| ||||||||||| ||| | ||||| ||| | ||| |
Sbjct 386 TTGTGGTTTGGAATCCGTATTTGGGGCAAACAAGATGGATCCAAAC-CAGAATGTATGAC 444
Query 409 CACCCTCCAAGTCCAAGCAAATGGGATTGGTTCAG-A-TATGCCCTTGGATACGAGGATA 466
| || ||| | | ||| ||| | || | || || || |||||||| |||
Sbjct 445 GGCGCT---AGTGGATGGAAA--GGA--CG-AAAGAAGTACGCTCTCGGATACGAAAATA 496
Query 467 A-A--G------GATCTTGTCGTAGCGTTAAATTCTTAAGGTTTTTAGATTATTT--ACC 515
| | | |||||| | ||||| ||| |||| ||| || ||||| |||| |||
Sbjct 497 ATAGTGAAAACAGATCTTCTTGTAGCCCCAAAATCTTGAGGGTTATAGATAATTTCAACC 556
Query 516 TGAAGAACCAGAAAACCAAAATGTTT-G-CTATGAAATCTATGATTTTGACTCTGATTTA 573
| |||| |||| || || ||| | |||||||||||||||||||| |||||||||
Sbjct 557 T-TTTCACCA-AAAA-CACCAT-TTTAGTATATGAAATCTATGATTTTGATTCTGATTTA 612
Query 574 TGGACAACTCTTGATGTCACTTCACACTCGTGGATATGTTATTCTAGCTGTGGCGTGTT- 632
||||| |||||||||||| || |||| | ||| ||| | | || | | | ||| | ||
Sbjct 613 TGGACTACTCTTGATGTCTCTCCACAATGGTGTATAAGGT-CTC-AAC-GAGGCCT-TTC 668
Query 633 TCTCAAGGGAAACGCTTACTGGCCTGTTG-TAAA-AA-GTAGCTCAGAAGCTA-ACATCG 688
||||||||||||| |||||||| | || |||| || | || || | | | ||| |
Sbjct 669 TCTCAAGGGAAACACTTACTGG---GGTGCTAAAGAACGGCGCGCACACG-GACCCATTG 724
Query 689 ATCACATAATCTATTTTGACTTTACAAGAGAGAG-TTTCGGGCCGCCTCTACCTTTACCG 747
|||| ||||| | |||||| |||||||||||||| ||| || |||| ||| ||| | ||
Sbjct 725 ATCATATAATTTGTTTTGATTTTACAAGAGAGAGATTT-GGACCGCTTCTGCCTCTGCCA 783
Query 748 TTTGGCGCTACAGATCGTGGA-TATTCATATGTGAATTTATCTT-GTGTTAAAGAAGAGA 805
||| | ||| | ||| | || | || | |||||| | |||| |||||| |
Sbjct 784 TTTAGTGCT--TG-GGGTGCACGGTT--TGCGT-CA-CTATCTTCG-GTTAGAGAAGAAA 835
Query 806 AGCTTGCAGCtttttttCAGCACTACATTTCATATAA-ATATGAATTTGAGATATGGGTT 864
|| | | ||||| |||||| | | | | | || |||| |||||||||||||| ||
Sbjct 836 AGATCACTGCTTTATTTCAG-A--A-A-AGC-GA-AACATATAAATTTGAGATATGGATT 888
Query 865 ACGACTAAGATTGAGGCCGA-AATGGTGTCGTGGAGCAAATTCTTGA-GAATGGAT---T 919
||||||| |||||||||| | ||| ||| |||||||||| ||||| | | |||||| |
Sbjct 889 ACGACTACGATTGAGGCCAACAAT-GTGACGTGGAGCAATTTCTTCACG-ATGGATACAT 946
Query 920 TGGGACC-T-A--ATATAGATATTCCA-ATTACTTTCTTCATTGACGAGGAGAAGAAAGT 974
| ||| | | | || | | || | | | |||||||||||||||||||||||||||
Sbjct 947 T-ATACCTTGACCAAAT-GCTTTTATATAAGAGTTTCTTCATTGACGAGGAGAAGAAAGT 1004
Query 975 TTTCATG-GGTTTT-GAGCATAGA-G-AATATCCCA-A-GAGAT-TTATTAACATCATCG 1027
| | || |||||| || | ||| | || | || | | | || ||||||| ||||| |
Sbjct 1005 TG-C-TGTGGTTTTTGAAAA-AGAAGGAAAA-CCAATATGCGACATTATTAATATCATTG 1060
Query 1028 GAGAGGCTAAATATTTAA-GAAAATTGGATCTCCAAGTACCT-CAAGGCCAATAC-TGTT 1084
|||||| || || |||| |||| ||||| || || ||| || | | || | ||||
Sbjct 1061 GAGAGGATAGATGCTTAATGAAA-TTGGAGCTTGGAGAACCCGCA-GACAAA-AGGTGTT 1117
Query 1085 GCCCACCTT-TGTGCTCTTATGTTCCAAGT-TCGATCCAAATCAAG 1128
| |||| || ||||| |||||||||||||| | | | |||||||||
Sbjct 1118 GGCCAC-TTGTGTGCCCTTATGTTCCAAGTGTAG-TGCAAATCAAG 1161
> Ahg908078 jgi|Araly1|908078|Al_scaffold_0002_1159
Length=1608
Score = 152 bits (82), Expect = 5e-36
Identities = 291/386 (75%), Gaps = 37/386 (10%)
Strand=Plus/Plus
Query 544 TATGAAATCTATGATTTTGACTCTGATTTATGGACAACTCTTGATGTCACTTCACACTCG 603
||||||||||| |||||||| |||||||||||||| |||||||||||| || |||||| |
Sbjct 979 TATGAAATCTACGATTTTGATTCTGATTTATGGACCACTCTTGATGTCTCTCCACACTGG 1038
Query 604 TGGAT-ATGTTATTCTAGCTGTGGCGTGTT-TCTCAAGGGAAACGCTTACTGGCCTGTTG 661
| || ||| | || ||| ||||| | || ||||||||||||| |||||||| || ||
Sbjct 1039 CGTATAATG-T-CTC-AGC-GTGGCCT-TTCTCTCAAGGGAAACACTTACTGGGGTGCTG 1093
Query 662 TAAAAAGTAGCT-CAGAAGCTAAC-A-TCGATCACATAATCTATTTTGACTTTACAAGAG 718
|| || | | | | | || | | | | | ||| ||||||| |||||| ||||||||||
Sbjct 1094 TAGAACGGA-ATGAATACGC-ACCTATTAG-TCATATAATCTGTTTTGATTTTACAAGAG 1150
Query 719 AGAG-TTTCGGGCCGCCTCTACCTTTACCGTTTGGCGCTACAGATCGTGGATA-TTCATA 776
|||| ||| || |||| | | ||| | || ||| | ||| | ||| | | || |
Sbjct 1151 AGAGATTT-GGACCGCTTTTGCCTCTGCCATTTAGTGCT--TG-GGGTGCAGAGTT--TG 1204
Query 777 TGTGAATTTATCTT-GTGTTAAAGAAGAGAAGCTTGCAGCtttttttCAGCACTACATTT 835
|| | |||||| | |||| |||||||||| | || ||||| |||||| || | |
Sbjct 1205 CGT-CA-CTATCTTCG-GTTAGAGAAGAGAAGATCGCTGCTTTATTTCAG-AC-A-A--G 1256
Query 836 CATATAA-ATATGAA-TTTGAGATATGGGTTACGACTAAGATTGAGGCCG-AAATGGTGT 892
| | || || | || |||||||||||| |||| |||||||||||||| | |||| ||||
Sbjct 1257 C-GA-AACAT-TTAAGTTTGAGATATGGATTACAACTAAGATTGAGGCTGAAAAT-GTGT 1312
Query 893 CGTGGAGCAAATTCTTGAGAATGGAT 918
||||||||| |||||| | |||||||
Sbjct 1313 CGTGGAGCAGATTCTTCACAATGGAT 1338
> Ahg929147 jgi|Araly1|929147|scaffold_301604.1
Length=1290
Score = 52.8 bits (28), Expect = 5e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 948 TTTCTTCATTGACGAGGAGAAGAAAGTT 975
||||||||||||||||||||||||||||
Sbjct 1005 TTTCTTCATTGACGAGGAGAAGAAAGTT 1032
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43422002463
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5