BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41520.1
Length=876
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493833 jgi|Araly1|493833|fgenesh2_kg.7__3266__AT5G41520.1 1288 0.0
> Ahg493833 jgi|Araly1|493833|fgenesh2_kg.7__3266__AT5G41520.1
Length=868
Score = 1288 bits (697), Expect = 0.0
Identities = 818/873 (94%), Gaps = 21/873 (2%)
Strand=Plus/Plus
Query 1 GCGGCTTCAGTCGAAATTAGGGTTTCGCGTT-AGGAGAAGAAGTTAAAGCAAAACACATA 59
||||||| ||||||||||||||||||||||| ||||||||||| ||||| |||||||||
Sbjct 1 GCGGCTTTAGTCGAAATTAGGGTTTCGCGTTAAGGAGAAGAAGAGAAAGCTAAACACATA 60
Query 60 CAAACGCAGTCACCTTCTCTATCGCCTCCTTCTTCAATCTCATCGCAATCATGATCATAT 119
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 CAAACGCAGTCACCTTCTCTGTCGCCTCCTTCTTCAATCTCATCGCAATCATGATCATAT 120
Query 120 CAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTCAAAGAGGGTGTTTTGTTTGCTA 179
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CAGAGAAGAATCGCCGTGAGATCTCCAAGTACCTCTTCAAAGAGGGTGTTTTGTTTGCTA 180
Query 180 AAAAGGATTTCAACTTACCACAACATCCTTTGATTGAGAGTGTTCCAAATCTGCAAGTTA 239
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AAAAGGATTTCAATTTACCACAACATCCTTTGATTGAGAGTGTTCCAAATCTGCAAGTTA 240
Query 240 TCAAGTTGATGCAGAGTTTCAAATCTAAGGAATATGTGAGAGAGACCTTTGCTTGGATGC 299
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 241 TCAAGTTGATGCAGAGTTTCAAATCTAAGGAATATGTGAGAGAGACTTTTGCTTGGATGC 300
Query 300 ATTACTACTGGTTCCTCACAAATGAAGGTATTGACTTTCTCAGGACTTACCTTAATCTCC 359
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 301 ATTACTACTGGTTCCTCACAAATGAAGGCATTGACTTTCTCAGGACTTACCTTAATCTCC 360
Query 360 CATCTGAGATTGTTCCTGCTACTTTGAAGAAGCAACAGAAGCCTCTTGGTCGACCTTTTG 419
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 361 CTTCTGAGATTGTTCCTGCTACTTTGAAGAAGCAACAGAAGCCTCTTGGTCGACCTTTCG 420
Query 420 GAGGTGGTGGTGACCGTCCCCG---TGGCCCTCCTCGTGGTGATGGAGAGAGGAGGTTTG 476
||||||||| |||||||||| ||| || |||||||||||||||||||||| |||||
Sbjct 421 GAGGTGGTG---ACCGTCCCCGCAGTGGTCCACCTCGTGGTGATGGAGAGAGGAAGTTTG 477
Query 477 GTGACAGAGATGGATACCGTGGAGGTCCTAAATCAGGTGGAGAGTATGGTGACAAG-GCT 535
|||||||||||| ||||||||||||||| | |||||||||||||| |||||||||| | |
Sbjct 478 GTGACAGAGATGCATACCGTGGAGGTCCGAGATCAGGTGGAGAGTTTGGTGACAAGAG-T 536
Query 536 GGAGCACCTGCTGATTACCAGCCTGGCTTCAGGGGTGGAGCTGGTGGAGCTAGGCAAGGG 595
||||| |||||||||||| | |||| ||||| ||| ||||||||||||||||||||||||
Sbjct 537 GGAGCTCCTGCTGATTACAACCCTGCCTTCAAGGGAGGAGCTGGTGGAGCTAGGCAAGGG 596
Query 596 TTTGGTCGTGGAGCTGGTGGTTTCGGTGGTGGTGCTG--C----TG--G-ATCTGATCTT 646
|||||||||||||| |||||||| ||||||||||||| | || | ||| ||||||
Sbjct 597 TTTGGTCGTGGAGCCGGTGGTTTTGGTGGTGGTGCTGGTCCAGCTGCTGGATCCGATCTT 656
Query 647 CCTTGAAAAGGACTTTCTTGTTTCTTTTTGGTCTTATTTAAGGTTACATAGTACCTTTGA 706
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 CCTTGAAAGGGACTTTCTTGTTTCTTTTTGGTCTTATTTAAGGTTACATAGTACCTTTGA 716
Query 707 TTTGAGAACGAATGTGTCTTTTGGAACTTTGTTTCTTTCTCTAAAACCATCTCACAATAT 766
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 717 TTTGAGAACGAATGTGTCTTTTGGAACTTTGTTTCTTTCTCTAAA-CCATTTCACAATAT 775
Query 767 GATTGTTTTTTACGTTAGAATTTTATGAAGAAATGTTGGATCGTTACATGAATCTTTTTA 826
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 GATTGTTTTTTACGGTAGAATTTTATGAAGAAATGTTGGATCGTTACATGAATCTTTTTA 835
Query 827 CACTGT-CC-TCCATTTTAAATTCTCCTATTTA 857
|||| | || ||| |||||||||||||||||||
Sbjct 836 CACTCTGCCCTCCTTTTTAAATTCTCCTATTTA 868
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32442602367
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5