BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41530.1
Length=429
Score E
Sequences producing significant alignments: (Bits) Value
Ahg891512 jgi|Araly1|891512|Al_scaffold_0007_3498 315 2e-85
> Ahg891512 jgi|Araly1|891512|Al_scaffold_0007_3498
Length=471
Score = 315 bits (170), Expect = 2e-85
Identities = 250/287 (87%), Gaps = 11/287 (4%)
Strand=Plus/Plus
Query 35 AGCTGTTGAATTAC---AATAATATGGAGACTGATAATGGTGACAAGGAGAAGAGTGAGG 91
||||| ||| |||| |||||| |||||| | |||||||||| || ||||||||||| |
Sbjct 191 AGCTGGTGAGTTACAAAAATAATCTGGAGATTAATAATGGTGAGAAAGAGAAGAGTGAAG 250
Query 92 AAGATGACTTGTGTGCTC-TGAAGGATGCACTTGAGGCTGTTATATTGTTTCAAGGTTTA 150
||||||||||||||| || | || |||||||||||||| | | || |||||||||||||
Sbjct 251 AAGATGACTTGTGTGTTCTTCAA-GATGCACTTGAGGCGGCGACATCGTTTCAAGGTTTA 309
Query 151 AGTGAATATCAAAAGAAGTTGATGTTTCCAAACTTGAAGAATCTTGGAGCTGAAACAATT 210
||| | ||||| ||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 310 AGTCAGTATCAGAAGAATTTGATGTTTCAAAACTTGAAGAATCTTGGAGCTGAAACAATT 369
Query 211 AAAGAGCTCATCGATGAATGGAAGG-AGTTGAATGTTGAGGAGCTAAATTTGAACATCAA 269
|||||| |||||||||||||||||| | |||| ||||||||||||| |||||||||||||
Sbjct 370 AAAGAGTTCATCGATGAATGGAAGGCA-TTGAGTGTTGAGGAGCTACATTTGAACATCAA 428
Query 270 GAAACAAACTTTCTTTACAAAGTTTGCAAACGCTAGCTGGAGTTTGA 316
|||| ||||| ||||| ||||||||||||| |||||||||||||
Sbjct 429 GAAAGAAACTCTCTTTGCAAAGTTTGCAAA----AGCTGGAGTTTGA 471
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15453013545
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5