BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G41560.1

Length=519
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg493832 jgi|Araly1|493832|fgenesh2_kg.7__3265__AT5G41560.1         571    1e-162


> Ahg493832 jgi|Araly1|493832|fgenesh2_kg.7__3265__AT5G41560.1
Length=418

 Score =  571 bits (309),  Expect = 1e-162
 Identities = 374/404 (93%), Gaps = 9/404 (2%)
 Strand=Plus/Plus

Query  29   ACGATTCCAATGGCGTCGATTCTGGGTGATTTGCCTTCCTTTGATCCTCACAATTTCAGT  88
            |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct  1    ACGATTCCAATGGCGTCGATTCTGGGTGATTTACCTTCCTTCGATCCTCACAATTTCAGT  60

Query  89   CAACATCGTCCCTCCGATCCTTCTAATCCCTCTAAGATGGTTCCTACCACCTATCGTCCT  148
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  61   CAACATCGTCCCTCCGATCCTTCTAATCCCTCTAGGATGGTTCCTACCACCTATCGTCCT  120

Query  149  ACTCACAACCGTACACTTCCACCACCAGATCAAGTGATAACTACAGAAGTGAAAAACATT  208
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  121  ACTCACAATCGTACACTTCCACCACCAGATCAAGTGATAACTACAGAAGTGAAAAACATA  180

Query  209  CTTATACGCAGCTTCTATCAACGAGCTGAAGAAAAGTTAAGACCAAAGAGACCGGCTACA  268
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  CTGATACGCAGCTTCTATCAACGAGCTGAAGAAAAGTTAAGACCAAAGAGACCGGCTACA  240

Query  269  GATCATCTGGCAGCGGAGCACGTGAACAAGCATTTCCGTGCTGCGTCTTCTTCTTCATCT  328
            |||||||||||||| ||||||||||||||||||||||| || ||||||||||| || |||
Sbjct  241  GATCATCTGGCAGCCGAGCACGTGAACAAGCATTTCCGCGCCGCGTCTTCTTCATCTTCT  300

Query  329  ACTCAGGGTTTATAAAAAACTTAAG-T--TCAAGCCTATAACAATGGTCATT-TGTATGA  384
            |||||||| ||||||||||||||   |  | | |||||| | |||||||||| |||||||
Sbjct  301  ACTCAGGGCTTATAAAAAACTTACCCTGGTGA-GCCTATGATAATGGTCATTGTGTATGA  359

Query  385  GTACCTCTTATTAGTGTTTTCAATGTAGaaaaaaaaaGATAAGA  428
            ||   |||||||||  ||||||||||||| ||| ||||| ||||
Sbjct  360  GT---TCTTATTAGCATTTTCAATGTAGAGAAAGAAAGA-AAGA  399



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18887016555


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5