BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41570.1
Length=834
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493831 jgi|Araly1|493831|fgenesh2_kg.7__3264__AT5G41570.1 837 0.0
Ahg474956 jgi|Araly1|474956|fgenesh2_kg.2__86__AT1G64000.1 431 4e-120
> Ahg493831 jgi|Araly1|493831|fgenesh2_kg.7__3264__AT5G41570.1
Length=589
Score = 837 bits (453), Expect = 0.0
Identities = 519/550 (94%), Gaps = 8/550 (1%)
Strand=Plus/Plus
Query 1 ATAACAATGGACAGAGAAGACATAAATCCTATGTTAAGCCGCCTAGATGTCGAAAACAAC 60
||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1 ATAACAATGGAAAGAGAAGACATAAATCATATGTTAA---GCCTAGATGTCGAAAACAAC 57
Query 61 AACACCTTCTCTTCCTTTGTAGACAAAACCCTAATGATGATGCCTCCATCAACATTTTCC 120
|||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 58 AACACCTTCTCTGCCTTTGTAGACAAAACCCTAATGATGATGCCTCCGTTAACATTTTCC 117
Query 121 GGTGAAGTGGAACCTTCATCTTCTTCTTCTTGGTATCCAGAAAGCTTTCATGTGCATGCG 180
|| ||||| || ||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 118 GGCGAAGTAGAGCCTTCCTCTTCTTCTTCTTGGTATCCAGAAAGCTTTCATGTGCATGTG 177
Query 181 CCGCCATTACCACCTGAGAATGATCAAATAGGTGAGAAAGGGAAG--G--AGCTGAAAGA 236
|||||| |||||||||||||||||||||| |||||||||||| | || ||||||
Sbjct 178 CCGCCACCGGCACCTGAGAATGATCAAATAGGAGAGAAAGGGAAGAAGAAAG-AGAAAGA 236
Query 237 GAAGAGATCGAGGAAAGTTCCAAGGATTGCGTTTCATACGAGGAGCGATGATGATGTTCT 296
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 237 GAAGAGATCGAGGAAAGTTCCAAGGATTGCGTTTCAAACGAGGAGTGATGATGATGTTCT 296
Query 297 TGATGATGGTTATCGTTGGCGAAAATATGGGCAGAAATCTGTCAAGCACAATGCTCATCC 356
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 297 TGATGATGGTTATCGTTGGCGAAAATATGGCCAGAAATCTGTCAAGCACAATGCTCATCC 356
Query 357 CAGGAGCTATTACAGATGTACGTACCACACATGCAACGTGAAGAAACAAGTGCAGAGATT 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 CAGGAGCTATTACAGATGTACGTACCACACATGCAACGTGAAGAAACAAGTGCAGAGATT 416
Query 417 GGCAAAAGATCCAAACGTCGTCGTAACGACCTACGAAGGCGTTCATAACCATCCTTGTGA 476
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 417 GGCAAAAGATCCAAACGTCGTCGTAACGACCTACGAAGGCATTCATAACCATCCTTGTGA 476
Query 477 GAAGCTCATGGAGACTCTTAATCCTCTTCTCAGGCAACTCCAGTTCCTCTCCAGTTTCTC 536
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 477 GAAGCTCATGGAGACTCTTAATCCTCTCCTCAGGCAACTTCAGTTCCTCTCCAGTTTCTC 536
Query 537 TAATCTTTGA 546
|||||| |||
Sbjct 537 TAATCTCTGA 546
> Ahg474956 jgi|Araly1|474956|fgenesh2_kg.2__86__AT1G64000.1
Length=848
Score = 431 bits (233), Expect = 4e-120
Identities = 296/326 (91%), Gaps = 6/326 (2%)
Strand=Plus/Plus
Query 259 AGGATTGCGTTTCATACGAGGAGCGATGATGATGTTCTTGATGATGGTTATCGTTGGCGA 318
||||| || |||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 421 AGGATAGCTTTTCATACAAGGAGTGATGATGATGTTCTTGATGATGGTTATCGTTGGCGA 480
Query 319 AAATATGGGCAGAAATCTGTCAAGCACAATGCTCATCCCAGGAGCTATTACAGATGTACG 378
|| || || ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 481 AAGTACGGTCAGAAATCTGTCAAGAACAATGCTCATCCCAGGAGCTATTACAGATGTACA 540
Query 379 TACCACACATGCAACGTGAAGAAACAAGTGCAGAGATTGGCAAAAGATCCAAACGTCGTC 438
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TACCACACATGCAACGTGAAGAAACAAGTGCAGAGATTGGCAAAAGATCCAAACGTCGTT 600
Query 439 GTAACGACCTACGAAGGCGTTCATAACCATCCTTGTGAGAAGCTCATGGAGACTCTTAAT 498
||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
Sbjct 601 GTAACAACCTACGAAGGTGTTCATAATCATCCTTGTGAGAAGCTCATGGAGACTCTTAGT 660
Query 499 CCTCTTCTCAGGCAACTCCAGTTCCTCTCCAGT-TTCTCTAATCTTTGAATATAT-AATG 556
||||| || |||||||| |||||||||||||| || ||| |||| ||| ||| | ||||
Sbjct 661 CCTCTCCTTAGGCAACTTCAGTTCCTCTCCAGAGTT-TCTGATCTGTGATTAT-TGAATG 718
Query 557 GCTTAATTAATGGTGTAATTACTTAA 582
|||||| ||||||||||| ||||
Sbjct 719 --TTAATTGGTGGTGTAATTAATTAA 742
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30841439853
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5