BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41590.1
Length=801
Score E
Sequences producing significant alignments: (Bits) Value
Ahg891504 jgi|Araly1|891504|Al_scaffold_0007_3490 1061 0.0
> Ahg891504 jgi|Araly1|891504|Al_scaffold_0007_3490
Length=669
Score = 1061 bits (574), Expect = 0.0
Identities = 639/670 (95%), Gaps = 5/670 (1%)
Strand=Plus/Plus
Query 1 ATGTTCCCTTTCTTGAAGCAACGGTCGAGGTCGGTCCACGGTGAAGATGCACCGTCATCT 60
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGTTCCCTTTCTTGAAGCATCGGTCGAGGTCGGTCCACGGTGAAGATGCACCGTCGTCT 60
Query 61 ACAGAGTCCACAGTCTCCGTCGCTGCCGCAGATAT-TGGAGGAGCGTGTACGACACTCAC 119
|||||||| ||||| | ||||||||| ||||| | ||||||||||||||||||||||||
Sbjct 61 ACAGAGTCGTCAGTCACTGTCGCTGCCACAGAT-TCTGGAGGAGCGTGTACGACACTCAC 119
Query 120 GGTGTGGAGAAAATCGCTTCTGGTGAGTTGTGAAGGATTCACGGTGATAGATTCGAATGG 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GGTGTGGAGAAAATCGCTTCTGGTGAGTTGTGAAGGATTCACGGTGATAGATTCGAATGG 179
Query 180 AGATTTGATTTACCGGGTCGATAATTATGCCCGAACCCGACCCGAGGAACTCATCCTCAT 239
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 180 AGATTTGATTTACCGGGTCGATAACTATGCCCGAACCCGACCCGAAGAACTCATCCTCAT 239
Query 240 GGATAAAGATGGAAACTCCCTCCTCCTCATGCATCGTACCAAGAAAATTACGCTAGTAGA 299
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 240 GGATAAAGATGGAAACTCCCTCCTCCTCATGCACCGTACCAAGAAAATTACGCTAGTAGA 299
Query 300 TAGTTGGGGAATCTATGAAGCAAATGATACAAAAGGAGAAACAAAAATACCAAAGTGCCC 359
|||||||||||| ||||||||||| |||||||| || || ||||| |||||||||||||
Sbjct 300 TAGTTGGGGAATATATGAAGCAAAGGATACAAATGGGGACGCAAAAGTACCAAAGTGCCC 359
Query 360 AA-C--CTGGTACATGAGGAAGAACTTAAAGATGAATATTCTGAGCACCAAATCCGACAT 416
|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AATCAGCTGGTACATGAGGAAGAACTTAAAGATGAATATTCTGAGCACCAAATCCGACAT 419
Query 417 TTTGGCATACGTATATTCAGGATCGTTCGATAAGAAGAATTCATACATCATCAAAGGATC 476
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 420 TTTGGCATACGTATATTCAGGATCGTTCGATAAGAAGAATTCTTACATCATCAAAGGATC 479
Query 477 GTATAGATGTAAATCGTGTAAAATAGTGCACGTCCCATTGAACAAGACAGTGGTGGAGAT 536
||| |||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||
Sbjct 480 GTACAGATGTAAATCGTGTAAAATAGTGCATGTCCCACTGAACCAGACAGTGGTGGAGAT 539
Query 537 CAAAAGGAAAGAGGTCAGAACCAAAGGAGTCCGGTTCGGTTCAGATGTTTTTGATCTGGT 596
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 540 CAAAAGGAAAGAGGCCAGAACCAAAGGAGTCCGGTTCGGTTCGGATGTTTTTGATCTGGT 599
Query 597 TGTTAATCCCGGTTTTGACACCGGTTTGGCAATGGCTTTGGTTTTGTTATTAGATCAAAT 656
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 600 TGTTAATCCTGGTTTTGACACCGGTTTGGCAATGGCTTTGGTTTTGTTATTAGACCAAAT 659
Query 657 GTTCTCTTAA 666
||||||||||
Sbjct 660 GTTCTCTTAA 669
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29583383592
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5