BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41600.1
Length=1095
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493828 jgi|Araly1|493828|fgenesh2_kg.7__3261__AT5G41600.1 1594 0.0
Ahg935582 jgi|Araly1|935582|scaffold_403570.1 84.2 2e-15
> Ahg493828 jgi|Araly1|493828|fgenesh2_kg.7__3261__AT5G41600.1
Length=1072
Score = 1594 bits (863), Expect = 0.0
Identities = 999/1063 (94%), Gaps = 15/1063 (1%)
Strand=Plus/Plus
Query 32 CACTCTTCAATCAGTAAA-GAGTTTTAGGtttttttttCTTCTTCTCGGAGGTTTGTAGA 90
|||||||||||||||||| || |||||| |||||||||||||| ||||||| ||||
Sbjct 17 CACTCTTCAATCAGTAAAGGA-ATTTAGG---GTTTTTCTTCTTCTCAGAGGTTTCTAGA 72
Query 91 ATCAACAAAAATGGTGGAAGACCACAAGCACGAGGAATCGATCTTGGAGAAGATTGTTGA 150
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 73 ATCAACAACAATGGTGGAAGACCACAAGCACGAAGAATCGATCTTGGAGAAGATTGTTGA 132
Query 151 GAAGATCCATGGCCACGGTGACTCGTCTTCTCTGTCCGATTCCGACGACGATAAGAAATC 210
||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 133 GAAGATCCATGGCCATGGTGACTCATCTTCTTTGTCCGATTCCGACGACGATAAGAAATC 192
Query 211 TACATCGTCTTCGTCGTCGTCCTTCAAGTCAAAGATTTACCGACTTTTCGGAAGGGAGAA 270
||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 193 TACGTCTTCTTCGTCGTCGTCCTTCAAGTCAAAGATTTATCGACTTTTCGGAAGGGAGAA 252
Query 271 ACCTGTTCACAAGGTTCTCGGTGGTGGAAAACCTGCTGATATATTCCTTTGGAGGAACAA 330
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 253 ACCTGTTCACAAGGTTCTCGGTGGCGGAAAACCTGCTGATATATTCCTTTGGAGGAACAA 312
Query 331 GAAGGTATCTGGTGGAGTCTTGGGTGCTGTAACTGCGTCTTGGGTCTTATTCGAGTTATT 390
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 313 GAAGGTATCTGGTGGAGTCTTTGGTGCTGTAACTGCGTCTTGGGTATTATTCGAGTTATT 372
Query 391 CGAATACCATCTCCTCGCTTTTCTCTGTCACTTTGCGATTTTTGCTCTTGCAGCATTGTT 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 373 CGAATACCATCTCCTCGCTTTTCTCTGTCACTTTGCGATTTTTGCTCTTGCAGCATTGTT 432
Query 451 CTTGTGGTCTAATGCTTGTACATTCATCCACAAGTCAACTCCTCACATCCCGGAAGTTCA 510
||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||
Sbjct 433 CTTGTGGTCTAATGCTTGTACCTTTATCCACAAGGCAACTCCTCACATCCCGGAAGTTCA 492
Query 511 CATCCCTGAAGATCCTATTCTTCAACTTGTTTCTGGATTAAGGATTGAAATCAATCGTGG 570
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 CATCCCTGAAGATCCTGTTCTTCAACTTGTTTCTGGATTAAGGATTGAAATCAATCGTGG 552
Query 571 TTTGACCCTTCTTAGGAACATTGCATCAGGAAAAGATGTCAAGAAATTTATCCTGGTAAT 630
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 553 ATTGACCGTTCTTAGGAACATTGCATCAGGAAAAGATGTCAAGAAATTTATCCTGGTAAT 612
Query 631 TGCTGGCTTGTGGGTTTTGTCCATTATTGGCAGCTGCTACAACTTCTTGACATTGTTCTA 690
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 TGTTGGCTTGTGGGTTTTGTCCATTATTGGCAGCTGCTACAACTTCTTGACATTGTTCTA 672
Query 691 CACTGCTACTGTCCTTCTCTTCACCATTCCTGTACTCTACGAGAAGTATGAGGACAAAGT 750
| |||||||||||||||||||||||||||||| || ||||| ||||| |||||||||||
Sbjct 673 TAGTGCTACTGTCCTTCTCTTCACCATTCCTGTGCTTTACGAAAAGTACGAGGACAAAGT 732
Query 751 AGATGCCTATGGGGAGAAGGCGATGAGGGAGATCAAAAAGCAATATGCAGTACTTGATGA 810
|||||||| ||| ||||||||||||| ||||||||| |||||||| |||||||| |||||
Sbjct 733 AGATGCCTTTGGCGAGAAGGCGATGAAGGAGATCAAGAAGCAATACGCAGTACTCGATGA 792
Query 811 GAAGGTATTGCGTAAGGT-CATAAGCAAGATTCCAAGAGGAGCTCTGAACAAGAAGAAGG 869
|||||| ||| ||||||| | | |||||||||||||||||||||||||||||||||||||
Sbjct 793 GAAGGTTTTGAGTAAGGTTC-TGAGCAAGATTCCAAGAGGAGCTCTGAACAAGAAGAAGG 851
Query 870 ATTAAGGAATGTGAGTTACTCTCTCATTGGAATCGTAGTAATGGTTCAAGACATGTTTTG 929
|||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||| |
Sbjct 852 ATTAAGGAATGTAAGTTATTCTCTCATTGGAATCGTAGTAATGGTTCAAAACATGTTT-G 910
Query 930 TTAGAAGCTGTTGGTTGATAAACCCTTTGATCTCTTGTTATTATTAT---GTTCATTATA 986
||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||
Sbjct 911 TTAGAAGCTGTTGGTTGATAAACCCTTTGGTCT-TTGTTATTATTATTATGTTCATTATA 969
Query 987 AATTTGGGGGTTTTAACTAAAAATATTTAGATTATGAGAGAACACGGATGGATGA-T-AA 1044
|| |||||| ||||||| |||| |||||||| |||||||||||||||||||||| | ||
Sbjct 970 AACTTGGGGTTTTTAACCAAAATTATTTAGAGTATGAGAGAACACGGATGGATGTGTTAA 1029
Query 1045 TTATTGTTGTTAGTTATTTGTCTT-AGTTAATTTCTCATCCTT 1086
|||||||||| |||||||||||| ||||||||||||||||||
Sbjct 1030 ATATTGTTGTTGGTTATTTGTCTTTAGTTAATTTCTCATCCTT 1072
> Ahg935582 jgi|Araly1|935582|scaffold_403570.1
Length=809
Score = 84.2 bits (45), Expect = 2e-15
Identities = 73/86 (85%), Gaps = 4/86 (5%)
Strand=Plus/Plus
Query 242 AAGATTTACCGACT-TTTCGGAAGGGAGAAACCTGTTCACAAGGTTCTCGGTGGTGGAAA 300
||||| || || || ||| || || ||||| |||||||||||||||||||||||||||||
Sbjct 163 AAGATCTATCGTCTGTTT-GGCAGAGAGAAGCCTGTTCACAAGGTTCTCGGTGGTGGAAA 221
Query 301 ACCTGCTGATATATTCCTT-TGGAGG 325
||||||||| | ||| || ||||||
Sbjct 222 GCCTGCTGATGTGTTC-TTGTGGAGG 246
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40791521190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5