BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G41600.1 Length=1095 Score E Sequences producing significant alignments: (Bits) Value Ahg493828 jgi|Araly1|493828|fgenesh2_kg.7__3261__AT5G41600.1 1594 0.0 Ahg935582 jgi|Araly1|935582|scaffold_403570.1 84.2 2e-15 > Ahg493828 jgi|Araly1|493828|fgenesh2_kg.7__3261__AT5G41600.1 Length=1072 Score = 1594 bits (863), Expect = 0.0 Identities = 999/1063 (94%), Gaps = 15/1063 (1%) Strand=Plus/Plus Query 32 CACTCTTCAATCAGTAAA-GAGTTTTAGGtttttttttCTTCTTCTCGGAGGTTTGTAGA 90 |||||||||||||||||| || |||||| |||||||||||||| ||||||| |||| Sbjct 17 CACTCTTCAATCAGTAAAGGA-ATTTAGG---GTTTTTCTTCTTCTCAGAGGTTTCTAGA 72 Query 91 ATCAACAAAAATGGTGGAAGACCACAAGCACGAGGAATCGATCTTGGAGAAGATTGTTGA 150 |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 73 ATCAACAACAATGGTGGAAGACCACAAGCACGAAGAATCGATCTTGGAGAAGATTGTTGA 132 Query 151 GAAGATCCATGGCCACGGTGACTCGTCTTCTCTGTCCGATTCCGACGACGATAAGAAATC 210 ||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||| Sbjct 133 GAAGATCCATGGCCATGGTGACTCATCTTCTTTGTCCGATTCCGACGACGATAAGAAATC 192 Query 211 TACATCGTCTTCGTCGTCGTCCTTCAAGTCAAAGATTTACCGACTTTTCGGAAGGGAGAA 270 ||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 193 TACGTCTTCTTCGTCGTCGTCCTTCAAGTCAAAGATTTATCGACTTTTCGGAAGGGAGAA 252 Query 271 ACCTGTTCACAAGGTTCTCGGTGGTGGAAAACCTGCTGATATATTCCTTTGGAGGAACAA 330 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 253 ACCTGTTCACAAGGTTCTCGGTGGCGGAAAACCTGCTGATATATTCCTTTGGAGGAACAA 312 Query 331 GAAGGTATCTGGTGGAGTCTTGGGTGCTGTAACTGCGTCTTGGGTCTTATTCGAGTTATT 390 ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 313 GAAGGTATCTGGTGGAGTCTTTGGTGCTGTAACTGCGTCTTGGGTATTATTCGAGTTATT 372 Query 391 CGAATACCATCTCCTCGCTTTTCTCTGTCACTTTGCGATTTTTGCTCTTGCAGCATTGTT 450 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 373 CGAATACCATCTCCTCGCTTTTCTCTGTCACTTTGCGATTTTTGCTCTTGCAGCATTGTT 432 Query 451 CTTGTGGTCTAATGCTTGTACATTCATCCACAAGTCAACTCCTCACATCCCGGAAGTTCA 510 ||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||| Sbjct 433 CTTGTGGTCTAATGCTTGTACCTTTATCCACAAGGCAACTCCTCACATCCCGGAAGTTCA 492 Query 511 CATCCCTGAAGATCCTATTCTTCAACTTGTTTCTGGATTAAGGATTGAAATCAATCGTGG 570 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 493 CATCCCTGAAGATCCTGTTCTTCAACTTGTTTCTGGATTAAGGATTGAAATCAATCGTGG 552 Query 571 TTTGACCCTTCTTAGGAACATTGCATCAGGAAAAGATGTCAAGAAATTTATCCTGGTAAT 630 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 553 ATTGACCGTTCTTAGGAACATTGCATCAGGAAAAGATGTCAAGAAATTTATCCTGGTAAT 612 Query 631 TGCTGGCTTGTGGGTTTTGTCCATTATTGGCAGCTGCTACAACTTCTTGACATTGTTCTA 690 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 613 TGTTGGCTTGTGGGTTTTGTCCATTATTGGCAGCTGCTACAACTTCTTGACATTGTTCTA 672 Query 691 CACTGCTACTGTCCTTCTCTTCACCATTCCTGTACTCTACGAGAAGTATGAGGACAAAGT 750 | |||||||||||||||||||||||||||||| || ||||| ||||| ||||||||||| Sbjct 673 TAGTGCTACTGTCCTTCTCTTCACCATTCCTGTGCTTTACGAAAAGTACGAGGACAAAGT 732 Query 751 AGATGCCTATGGGGAGAAGGCGATGAGGGAGATCAAAAAGCAATATGCAGTACTTGATGA 810 |||||||| ||| ||||||||||||| ||||||||| |||||||| |||||||| ||||| Sbjct 733 AGATGCCTTTGGCGAGAAGGCGATGAAGGAGATCAAGAAGCAATACGCAGTACTCGATGA 792 Query 811 GAAGGTATTGCGTAAGGT-CATAAGCAAGATTCCAAGAGGAGCTCTGAACAAGAAGAAGG 869 |||||| ||| ||||||| | | ||||||||||||||||||||||||||||||||||||| Sbjct 793 GAAGGTTTTGAGTAAGGTTC-TGAGCAAGATTCCAAGAGGAGCTCTGAACAAGAAGAAGG 851 Query 870 ATTAAGGAATGTGAGTTACTCTCTCATTGGAATCGTAGTAATGGTTCAAGACATGTTTTG 929 |||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||| | Sbjct 852 ATTAAGGAATGTAAGTTATTCTCTCATTGGAATCGTAGTAATGGTTCAAAACATGTTT-G 910 Query 930 TTAGAAGCTGTTGGTTGATAAACCCTTTGATCTCTTGTTATTATTAT---GTTCATTATA 986 ||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||| Sbjct 911 TTAGAAGCTGTTGGTTGATAAACCCTTTGGTCT-TTGTTATTATTATTATGTTCATTATA 969 Query 987 AATTTGGGGGTTTTAACTAAAAATATTTAGATTATGAGAGAACACGGATGGATGA-T-AA 1044 || |||||| ||||||| |||| |||||||| |||||||||||||||||||||| | || Sbjct 970 AACTTGGGGTTTTTAACCAAAATTATTTAGAGTATGAGAGAACACGGATGGATGTGTTAA 1029 Query 1045 TTATTGTTGTTAGTTATTTGTCTT-AGTTAATTTCTCATCCTT 1086 |||||||||| |||||||||||| |||||||||||||||||| Sbjct 1030 ATATTGTTGTTGGTTATTTGTCTTTAGTTAATTTCTCATCCTT 1072 > Ahg935582 jgi|Araly1|935582|scaffold_403570.1 Length=809 Score = 84.2 bits (45), Expect = 2e-15 Identities = 73/86 (85%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 242 AAGATTTACCGACT-TTTCGGAAGGGAGAAACCTGTTCACAAGGTTCTCGGTGGTGGAAA 300 ||||| || || || ||| || || ||||| ||||||||||||||||||||||||||||| Sbjct 163 AAGATCTATCGTCTGTTT-GGCAGAGAGAAGCCTGTTCACAAGGTTCTCGGTGGTGGAAA 221 Query 301 ACCTGCTGATATATTCCTT-TGGAGG 325 ||||||||| | ||| || |||||| Sbjct 222 GCCTGCTGATGTGTTC-TTGTGGAGG 246 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40791521190 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5