BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G41605.1

Length=84
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg947559 jgi|Araly1|947559|scaffold_703788.1                        150    1e-36
  Ahg315021 jgi|Araly1|315021|fgenesh1_pm.C_scaffold_2000054          69.4    3e-12


> Ahg947559 jgi|Araly1|947559|scaffold_703788.1
Length=205

 Score =  150 bits (81),  Expect = 1e-36
 Identities = 83/84 (99%), Gaps = 0/84 (0%)
 Strand=Plus/Plus

Query  1   GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGTAAGAGGGCG  60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  15  GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGTAAGAGGGCG  74

Query  61  TGGGTTCAAACCCCACTTCTGACA  84
           |||||||||||||||||| |||||
Sbjct  75  TGGGTTCAAACCCCACTTTTGACA  98


> Ahg315021 jgi|Araly1|315021|fgenesh1_pm.C_scaffold_2000054
Length=324

 Score = 69.4 bits (37),  Expect = 3e-12
 Identities = 37/37 (100%), Gaps = 0/37 (0%)
 Strand=Plus/Plus

Query  7   ATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTG  43
           |||||||||||||||||||||||||||||||||||||
Sbjct  1   ATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTG  37



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 2369697846


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5