BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G41605.1 Length=84 Score E Sequences producing significant alignments: (Bits) Value Ahg947559 jgi|Araly1|947559|scaffold_703788.1 150 1e-36 Ahg315021 jgi|Araly1|315021|fgenesh1_pm.C_scaffold_2000054 69.4 3e-12 > Ahg947559 jgi|Araly1|947559|scaffold_703788.1 Length=205 Score = 150 bits (81), Expect = 1e-36 Identities = 83/84 (99%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 1 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGTAAGAGGGCG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 15 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGTAAGAGGGCG 74 Query 61 TGGGTTCAAACCCCACTTCTGACA 84 |||||||||||||||||| ||||| Sbjct 75 TGGGTTCAAACCCCACTTTTGACA 98 > Ahg315021 jgi|Araly1|315021|fgenesh1_pm.C_scaffold_2000054 Length=324 Score = 69.4 bits (37), Expect = 3e-12 Identities = 37/37 (100%), Gaps = 0/37 (0%) Strand=Plus/Plus Query 7 ATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTG 43 ||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTG 37 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 2369697846 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5