BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41610.1
Length=2837
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947558 jgi|Araly1|947558|scaffold_703787.1 3941 0.0
> Ahg947558 jgi|Araly1|947558|scaffold_703787.1
Length=2476
Score = 3941 bits (2134), Expect = 0.0
Identities = 2370/2485 (95%), Gaps = 12/2485 (0%)
Strand=Plus/Plus
Query 201 ACAAGGTTTAGTCTGCAAGGATGGCTACAAATTCTACAAAAGCTTGTCCTGCTCCGATGA 260
||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||
Sbjct 1 ACAAGGTTTAGTCTGCAAGAATGGCTACTAATTCTACCAAAGCTTGTCCTGCTCCGATGA 60
Query 261 AAGCAACCTCTAATGGAGTTTTCCAAGGAGATAACCCTATAGACTTTGCGTTACCTCTTG 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAGCAACCTCTAATGGAGTTTTCCAAGGAGATAACCCTATAGACTTTGCGTTACCTCTTG 120
Query 321 CGATTCTGCAGATAGTTATTGTTATAGTTCTCACTCGTGTTCTTGCTTACCTTTTAAGAC 380
|||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||
Sbjct 121 CGATTCTGCAGATAGTCATTGTTATTGTTCTCACTCGTGTTCTTGCTTACATTTTAAGAC 180
Query 381 CTTTGAGACAGCCTCGTGTTATTGCTGAAGTTATTGGTGGGATTATGCTTGGACCTTCTC 440
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTTTGAGGCAGCCTCGTGTTATTGCTGAAGTTATTGGTGGGATTATGCTTGGACCTTCTC 240
Query 441 TTCTTGGTCGTTCCAAGGCT-TTTCTAGACGCTGTGTTCCCGAAGAAAAGCTTGACTGTT 499
|||||||||||||||||| | ||||| ||||||||||||||||||||||| |||||||||
Sbjct 241 TTCTTGGTCGTTCCAAGG-TCTTTCTTGACGCTGTGTTCCCGAAGAAAAGTTTGACTGTT 299
Query 500 CTTGAAACTCTGGCTAATCTCGGCCTTCTCTTCTTCCTTTTCCTTGCTGGTCTAGAGATT 559
|| |||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 300 CTAGAAACTTTGGCTAATCTCGGCCTTCTCTTCTTCCTGTTCCTTGCCGGTCTAGAGATT 359
Query 560 GATACCAAAGCCCTTCGTCGCACCGGGAAAAAGGCTTTGGGAATTGCCTTGGCTGGAATA 619
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 360 GATACCAAAGCCCTTCGTCACACCGGGAAAAAGGCTTTGGGAATTGCCCTGGCTGGAATA 419
Query 620 ACCCTCCCGTTTGCTCTTGGCATTGGTTCTTCATTCGTTTTAAAAGCAACAATCTCCAAA 679
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 420 ACCCTCCCGTTTGCTCTTGGCATTGGTACTTCATTCGTTTTAAAGGCAACAATCTCCAAA 479
Query 680 GGAGTGAATAGTACCGCGTTTCTCGTCTTCATGGGTGTGGCACTCTCTATCACTGCATTC 739
|||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 480 GGAGTGGATAGTACTGCGTTTCTCGTCTTCATGGGTGTGGCACTCTCCATCACTGCATTC 539
Query 740 CCTGTGTTGGCCCGTATCTTAGCGGAGCTAAAGCTTCTAACTACTGAGATAGGACGACTT 799
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 540 CCTGTGTTGGCCCGTATCTTAGCTGAGCTAAAGCTTCTAACTACTGAAATAGGACGACTT 599
Query 800 GCTATGTCGGCAGCTGCCGTTAACGATGTGGCAGCTTGGATTCTACTTGCTCTAGCCATT 859
|||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 600 GCTATGTCCGCAGCTGCTGTTAACGATGTGGCAGCTTGGATTCTCCTTGCTCTAGCCATC 659
Query 860 GCTCTCTCGGGATCCAATACCTCTCCCCTTGTCTCTCTCTGGGTTTTCCTTTCCGGGTGT 919
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 660 GCTCTCTCGGGATCCAATACCTCTCCCCTTGTCTCTCTCTGGGTTTTCCTTTCCGGTTGC 719
Query 920 GCTTTTGTTATCGGTGCGT-CTTTCATCATTCCACCAATCTTTAGATGGATTTCCCGGAG 978
|||||||| |||||||| | ||||||||||||| ||||| |||||||||||| |||||||
Sbjct 720 GCTTTTGTCATCGGTGC-TGCTTTCATCATTCCGCCAATATTTAGATGGATTGCCCGGAG 778
Query 979 GTGCCACGAGGGAGAACCTATCGAGGAAACCTACATCTGTGCCACTTTGGCTGTAGTTCT 1038
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 779 GTGCCACGAGGGAGAACCTATCGAAGAAACCTACATCTGTGCCACTTTGGCTGTAGTTCT 838
Query 1039 TGTTTGTGGATTCATAACTGATGCCATTGGAATCCACTCCATGTTTGGTGCCTTTGTGGT 1098
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 839 TGTTTGTGGATTCATTACTGATGCCATTGGAATCCATTCCATGTTTGGTGCCTTTGTGGT 898
Query 1099 GGGTGTTTTGATTCCAAAGGAAGGACCTTTTGCTGGTGCACTAGTTGAGAAGGTGGAAGA 1158
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 899 GGGTGTTTTGATCCCAAAGGAAGGACCTTTTGCTGGTGCACTCGTTGAGAAGGTGGAAGA 958
Query 1159 TCTTGTATCCGGTCTCTTCCTGCCGCTTTACTTTGTGGCAAGTGGTCTGAAAACTAATGT 1218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TCTTGTATCCGGTCTCTTCCTGCCGCTTTACTTTGTGGCAAGTGGTCTGAAAACTAATGT 1018
Query 1219 GGCAACGATCCAAGGAGCTCAGTCTTGGGGTCTTCTGGTTTTAGTCACCGCCACAGCTTG 1278
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 GGCCACGATTCAAGGAGCTCAGTCTTGGGGTCTTCTGGTTTTAGTCACCGCCACAGCTTG 1078
Query 1279 TTTCGGTAAGATATTGGGCACTCTCGGTGTTTCCCTCGCCTTCAAGATACCTATGCGAGA 1338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 TTTCGGTAAGATATTGGGCACTCTCGGTGTTTCCCTCGCCTTCAAGATACCTATGCGAGA 1138
Query 1339 AGCAATAACATTAGGATTCCTCATGAACACTAAAGGATTGGTCGAACTCATCGTCCTCAA 1398
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1139 AGCAATAACATTAGGATTCCTCATGAACACTAAGGGATTGGTCGAACTCATCGTCCTCAA 1198
Query 1399 CATCGGAAAAGATCGAAAGGTTCTTAATGATCAGACATTTGCCATAATGGTTCTAATGGC 1458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 CATCGGAAAAGATCGAAAGGTTCTTAATGATCAGACATTTGCCATAATGGTTCTAATGGC 1258
Query 1459 TCTCTTCACAACCTTCATCACCACACCAGTCGTAATGGCAGTCTACAAACCAGCGAGAAG 1518
||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1259 TCTGTTCACAACCTTCATCACCACACCAGTCGTAATGGCAGTCTACAAACCGGCTAGAAG 1318
Query 1519 AGCGAAGAAAGAAGGAGAATACAAACACAGGGCAGTAGAACGAGAGAACACAAACACACA 1578
||| ||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||
Sbjct 1319 AGCAAAGAAAGAAGGAGAATACAAACACAGGACGGTAGAACGAGAGAACACAAACTCACA 1378
Query 1579 GCTTCGAATCCTCACATGTTTCCACGGAGCAGGAAGCATTCCTTCAATGATAAACCTCCT 1638
|||||||||||||||||||||||| || || |||||||||||||||||||||||||||||
Sbjct 1379 GCTTCGAATCCTCACATGTTTCCATGGCGCCGGAAGCATTCCTTCAATGATAAACCTCCT 1438
Query 1639 AGAAGCATCAAGAGGTATCGAAAAAGGCGAAGGGCTCTGCGTTTACGCTCTCCACTTACG 1698
|||||||||||||| ||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 1439 CGAAGCATCAAGAGGCATCGAAAAAGGCGAAGGACTGTGCGTATACGCTCTCCACTTACG 1498
Query 1699 GGAACTATCAGAGAGATCATCAGCTATTCTAATGGTTCATAAAGTTCGGAAAAACGGAAT 1758
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1499 AGAACTATCAGAGAGATCATCAGCTATTCTAATGGTTCATAAAGTTCGCAAAAACGGAAT 1558
Query 1759 GCCGTTTTGGAACAGAAGAGGAGTAAACGCAGACGCTGATCAAGTAGTAGTTGCTTTCCA 1818
||| ||||||||| | ||||| || |||||| |||| |||||||||||||||||||||||
Sbjct 1559 GCCATTTTGGAACCGCAGAGGTGTCAACGCACACGCAGATCAAGTAGTAGTTGCTTTCCA 1618
Query 1819 AGCTTTTCAACAGCTAAGCAGAGTCAATGTCCGACCAATGACAGCAATCTCTTCAATGTC 1878
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1619 AGCTTTTCAACAACTAAGCAGAGTCAATATCCGACCAATGACAGCAATCTCTTCAATGTC 1678
Query 1879 TGATATTCATGAAGATATCTGCACAACAGCTGTAAGaaaaaaaGCAGCCATTGTGATTCT 1938
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 1679 TGATATTCATGAAGATATCTGCACAACAGCTGCAAGAAAAAAAGCTGCCATTGTGATTCT 1738
Query 1939 TCCGTTTCACAAGCATCAACAGCTTGATGGTTCGTTAGAGACTACACGTGGCGATTACCG 1998
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1739 TCCGTTTCACAAGCATCAACAGCTCGATGGTTCGTTAGAGACTACACGTGGCGATTACCG 1798
Query 1999 TTGGGTTAACCGGAGAGTTTTGCTTCAAGCTCCTTGTTCGGTTGGTATATTCGTTGACCG 2058
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 1799 TTGGGTTAACCGGAGAGTTTTGCTTGAAGCTCCTTGTTCAGTTGGTATATTCGTTGACCG 1858
Query 2059 TGGACTCGGAGGTTCAAGTCAAGTCTCAGCTCAAGATGTTTCTTACTCTGTTGTTGTTCT 2118
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1859 TGGACTCGGTGGTTCGAGTCAAGTCTCAGCTCAAGATGTTTCTTACTCTGTTGTTGTTCT 1918
Query 2119 GTTCTTCGGTGGTCCTGATGATCGTGAAGCGTTGGCTTATGGATTACGTATGGCGGAGCA 2178
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1919 GTTCTTCGGTGGTCGTGATGATCGTGAAGCATTGGCTTATGGATTACGTATGGCGGAGCA 1978
Query 2179 TCCCGGAATTGTTTTGACTGTTTTCCGATTTGTGGTATCGCCGGAGAGAGTCGGAGAGAT 2238
|||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1979 TCCCGGAATTACTTTGACGGTTTTCCGATTTGTGGTATCGCCGGAGAGAGTCGGAGAGAT 2038
Query 2239 TGTTAATGTTGAAGTGAGTAACAATAACAACGAGAATCAGAGTGTGAAGAATCTGAAATC 2298
|||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 2039 TGTTAACGTTGAAGTGAGTAACACTAACAACGAGAGTCAGAGTGTGAAGAATCTGAAATC 2098
Query 2299 GGATGAGGAGATTATGTCTGAGATAAGGAAGATATCTTCGGTGGACGAATCGGTTAAGTT 2358
||||||||||||||| |||||||||| ||||||||| |||||||| ||||||||||||||
Sbjct 2099 GGATGAGGAGATTATATCTGAGATAAAGAAGATATCGTCGGTGGAGGAATCGGTTAAGTT 2158
Query 2359 CGTGGAGAAACAGATTGAAAACGCCGCCGTGGATGTTAGATCGGCGATTGAGGAAGTGCG 2418
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 2159 CGTGGAGAAACGGATTGAAAACGCCGCCGCGGATGTTAGATCGGCGATTGAGGAAGTACG 2218
Query 2419 GCGGAGCAATTTGTTTTTGGTTGGTAGAATGCCAGGTGGAGAAATTGCATTGGCGATTAG 2478
||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||
Sbjct 2219 GCGGAGCAATTTGTTTTTGGTTGGTCGAATGCCAGGTGGCGAAATAGCATTGGCGATTAG 2278
Query 2479 GGAGAATAGTGAATGTCCGGAGCTTGGACCTGTAGGAAGCTTGTTGATTTCGCCGGAATC 2538
||| || |||||||||||||||||||||||||| ||||| || |||||||||||||||||
Sbjct 2279 GGAAAACAGTGAATGTCCGGAGCTTGGACCTGTCGGAAGTTTATTGATTTCGCCGGAATC 2338
Query 2539 TTCGACAAAAGCATCGGTTTTGGTGATTCAGCAGTACAACGGCACCGGAATAGCTCCGGA 2598
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 2339 TTCGACAAAAGCATCGGTTTTGGTGATTCAGCAGTATAACGGCACCGGAACAGCTCCGGA 2398
Query 2599 TTTGGGTGCGGCTGAGACGGAGGTATTGACTTCTACGGATAAAGACTCTGATTGAATGAA 2658
||||| | | |||| |||||||||||||||||| ||||||||||||||||||||| |
Sbjct 2399 TTTGGCTTCAGCTGGGACGGAGGTATTGACTTCAACGGATAAAGACTCTGATTGA--G-- 2454
Query 2659 TC-ATTGGTTAAAAACAAGAACGGT 2682
|| ||||||||| ||||||||||
Sbjct 2455 TCCATTGGTTAA---CAAGAACGGT 2476
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107071678695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5