BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41620.1
Length=2064
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493825 jgi|Araly1|493825|fgenesh2_kg.7__3258__AT5G41620.1 3011 0.0
Ahg474936 jgi|Araly1|474936|fgenesh2_kg.2__66__AT1G64180.1 440 2e-122
> Ahg493825 jgi|Araly1|493825|fgenesh2_kg.7__3258__AT5G41620.1
Length=2000
Score = 3011 bits (1630), Expect = 0.0
Identities = 1884/2002 (94%), Gaps = 36/2002 (2%)
Strand=Plus/Plus
Query 1 Atggaaagtaaagtaaga-g-g-agaagaagagagacaaaaagtggaaagattggtggaa 57
|||||||||||||||||| | | ||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGGAAAGTAAAGTAAGAGGAGAAGAAGAAGAGAGACAGAAAGTGGAAAGATTGGTGGAA 60
Query 58 aagttaaagGTTCataataataataataatCGATCTTCAACTCCGGCGCACATTAGCTTC 117
||||| || | ||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 61 AAGTT-AA----C-GAATCATATTAATAATCGATCTTCAACTCCGGCGCACATTAGCTTC 114
Query 118 GTTCCTAACTCAATCGTTGTGTCCTCTAGAAAGCTCGCTGCTGCTTTCTGGGAGTTTCAT 177
|| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 115 GTCCCTAACTCAATCGTTGTTTCCTCTAGAAAACTCGCTGCTGCTTTCTGGGAGTTTCAT 174
Query 178 CAGTACCACTACAAAGACGAAGAAGATTGCTCTTACTCTTACCTCTCCTCTGCTTCTGCT 237
|| ||||||||| | |||||||||| |||||||||||||||||||||||||
Sbjct 175 CAATACCACTAC-----C-AAGAAGATTG------CTCTTACCTCTCCTCTGCTTCTGCT 222
Query 238 AAAATGCACCGCGGCCCAAATGGTTTCGCCGGAGCTAGTAGCCGCCGTCAACGTCACGG- 296
| ||||||||| || | |||||||||||||||||||||| ||||||||||||||||||
Sbjct 223 AGAATGCACCGTGGGGCGAATGGTTTCGCCGGAGCTAGTAACCGCCGTCAACGTCACGGC 282
Query 297 AAAGGCGGTTGCGGTTAAGGAGAATGGTCTTGACCTTTCTCAATTCCTTCGAGATCCTTC 356
||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 283 AAA-GCGGTGGCGGTTAAGGAGAATGGTCTTGACCTTTCCCAATTCCTTCGAGATCCTTC 341
Query 357 TCCTGATCATCAGCCAGATAGTGCGGGAAGTCTAAGGAGACAGATTGGTCAAATGTTGAT 416
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 342 TCCTGATTATCAGCCAGATAGTGCGGGAAGTCTAAGGAGGCAGATTGGTCAAATGTTGAT 401
Query 417 AAAGCATCATCAATCAATCGATAGAAACAATCACGCTCTTCAGCCTGTATCTCCTGCTAG 476
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 402 AAAGCATCATCAATCAATCGAAAGAAACAATCACGCGCTTCAGCCTGTATCTCCTGCTAG 461
Query 477 TTACGGAAGCTCTCTCGAGGTTACGACATACAACAAAGCAGTAACTCCAAGTAGTTCATT 536
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 462 TTACGGAAGCTCTCTCGAGGTTACGACATACAACAAAGCGGTAACTCCAAGTAGTTCATT 521
Query 537 GGAGTTCCGAGGAAGACCGTCTAGAGAACCTCACTACAATCTCAAGACATCAACCGAACT 596
||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 522 GGATTTCCGAGGAAGAGCGTCTAGAGAACCTCATTACAATCTCAAGACATCAACCGAACT 581
Query 597 TCTTAAAGTACTGAACCGTATTTGGAGCCTTGAGGAGCAGCATGTCTCCAATATCTCCTT 656
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 582 TCTTAAAGTATTGAACCGTATTTGGAGCCTTGAGGAGCAGCATGTCTCCAATATCTCTTT 641
Query 657 GATAAAAGCTTTGAAAACCGAGGTGGCTCATTCACGCGTTCGAATCAAGGAGCTTCTTAG 716
|||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 642 GATAAAGGCTTTGAAAACCGAGGTGGCTCATTCTCGTGTTCGAATCAAGGAGCTTCTTAG 701
Query 717 GTACCAGCAAGCCGATAGACACGAGCTAGACAGTGTGGTGAAGCAACTCGCTGAAGAAAA 776
|||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 702 GTACCAGCAAGCTGATAGACACGAGTTAGACGGTGTGGTGAAGCAACTCGCTGAAGAAAA 761
Query 777 GTTGTTGAGCAAGAATAAGGAAGTTGAGCGGATGAGCTCTGCTGTTCAGTCCGTGAGGAA 836
||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 762 GTTGTTGAGGAAGAATAAGGAAGTTGAGCGGATGAGCTCTGCTGTTCATTCTGTGAGGAA 821
Query 837 AGCGTTAGAAGATGAGCGGAAACTTAGAAAACGTTCTGAGAGTTTGCATAGGAAAATGGC 896
|| |||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||
Sbjct 822 AGAGTTAGAAGATGAGCGGAAGCTTAGGAAACGTTCTGAGAGTTTGCATAGGAAATTGGC 881
Query 897 AAGAGAGCTCTCGGAAGTGAAGTCTTCGTTGTCTAACTGTGTCAAGGAGCTTGAGAGAGG 956
| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 882 ACGAGAGCTCTCGGAAGTGAAGTCTTCGTTGTCTAACTGTGTTAAGGAGCTTGAGAGAGG 941
Query 957 GTCTAAATCAAATAAGATGATGGAGCTACTCTGCGATGAGTTTGCCAAAGGGATCAAGAG 1016
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 942 GGCTAAATCAAATAAGATGATGGAGCTACTCTGCGATGAGTTTGCCAAAGGGATCAAGAG 1001
Query 1017 TTACGAAGAGGAGATTCACGGTTTAAAGAAGAAGAATCTTGATAAGGATTGGGCGGGTCG 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1002 TTACGAAGAGGAGATTCACGGTTTAAAGAAGAAGAATCTTGATAAGGATTGGGCGGGTCG 1061
Query 1077 AGGTGGAGGAGATCAGTTGGTTCTTCATATTGCGGAATCTTGGCTTGACGAAAGGATGCA 1136
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1062 AGGTGGAGGAGATCAATTGGTTCTTCATATCGCGGAATCTTGGCTTGACGAAAGGATGCA 1121
Query 1137 GATGAGATTAGAAGGTGGAGATACATTGAATGGTAAGAACAGATCAGTGCTGGATAAGCT 1196
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 1122 GATGAGATTAGAAGGTGGAGATACATTGAATGGTAACAACAGATCAGTGTTGGATAAGCT 1181
Query 1197 GGAGGTTGAGATCGAGACATTTCTTCAGGAGAAGCGGAATGAAATACCGAGAAACCGCCG 1256
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1182 CGAGGTTGAGATCGAGACATTTCTCCAGGAGAAGCGGAATGAAATACCGAGAAACCGCCG 1241
Query 1257 GAATTCACTTGAATCTGTTCCGTTTAACACCTTGAGTGCACCACCGCGGGATGTAGACTG 1316
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1242 GAATTCACTTGAATCTGTCCCGTTCAACACCTTGAGTGCACCACCGCGGGATGTAGACTG 1301
Query 1317 TGAAGAAGACTCTGGAGGAAGCGATTCTAATTGCTTTGAGCTCAAGAAACCTGCAGAGTC 1376
||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 1302 TGATGAAGACTCTGGAGGAAGCGATTCGAATTGCTTTGAGCTCAAGAAAGCTGCAGAGTC 1361
Query 1377 TTATGGAGACGAAACTAAGAAACCAAACCAACATAACAAAGACGGTTCGATTGATGAAAA 1436
| |||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||
Sbjct 1362 TCATGGAGACGAAACTAAGAAACCAAACCAACTTAACAAAGACAGTTTGATTGATGAAAA 1421
Query 1437 GCCGAAAAGCCCGTCGAGTTTCCAAGTGAACTTTGAGGATCAAATGGCGTGGGCGTTATC 1496
| ||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||
Sbjct 1422 GGCGAAAAGCCCGTCGAGTTTTCAAGTTAACTTTGAGGATCAAATGGCGTGGGCAATATC 1481
Query 1497 GAGTAACGGAAAGAAGAAAACCACCCGAGCTATTgaagacgaagaagaagaagaagaTGT 1556
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 1482 GAGTAACGGAAAGAAGAAAACCGCCCGAGCTATTGAAGACGAAGAAGAAGAAGA---TGT 1538
Query 1557 AAAGCCTGAGAACAGCAACAACAATAAGAAACCAGAAAATGAGTGTGCTACTACGAACAA 1616
|||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 1539 AAAGCCTGAGAATAGCAACAACATTAAGAAACCAGAAGATGAGTGTGCTACTACGAACAA 1598
Query 1617 GAACGATGTAATGGGGGAAATGATACGAACACACAGAAGGTTATTGTCCGAAACTCGTGA 1676
|||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1599 GAACGATGCAATGGGGGAAATGATTCTAACACACAGAAGGTTATTGTCCGAAACTCGTGA 1658
Query 1677 AATCGATGAAGCGTCTTGCAATTTCCCATCTTCTCGAAGACAAGCAAGTCCAGTTCGACA 1736
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1659 AATCGATGAAGCGTCTTGCAATTTCCCATCTTCTAGAAGACAAGCAAGTCCAGTTCGACA 1718
Query 1737 ATGGATTTCAAGAACCGTCGCACCTGATCTTCTAGGCCCGTCGGAGATTGCGATAGCTCA 1796
||||||||||||||| || ||||||| |||||||||| ||||||| ||||| ||||||||
Sbjct 1719 ATGGATTTCAAGAACAGTGGCACCTGGTCTTCTAGGCTCGTCGGATATTGCAATAGCTCA 1778
Query 1797 TGGAGTAAAGGATAATACTTTGAAAACTAAGCTAGCAAACAGTTCAAAGTCGCGTCTTCG 1856
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1779 TGGAGTAAAGGATAATACTTTGAAAACTAAGCTCGCAAAGAGTTCAAAGTCGCGTCTTCG 1838
Query 1857 GTTATTCAAAGGCTAATCTATCCAGAGTGGTTCGGTCGAAAACGGACAAAAACGAGAGTT 1916
|||||||||||||||||| ||||||||||||||||||||||||| | ||| ||
Sbjct 1839 GTTATTCAAAGGCTAATCCATCCAGAGTGGTTCGGTCGAAAACG-A-------GAG--TT 1888
Query 1917 CTTGTTGGATACACACAGATCCCTGAGTTTCATTCATATTCACGTTCTTTGTAAATCAAA 1976
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 1889 CTTGTTGGATACACACAGATCCCTGAATTTCATTCATATTCATGTTCTTTGTAAATCAAA 1948
Query 1977 CACATCTATATATTTGTATAAT 1998
|| |||||||||||||||||||
Sbjct 1949 CATATCTATATATTTGTATAAT 1970
> Ahg474936 jgi|Araly1|474936|fgenesh2_kg.2__66__AT1G64180.1
Length=1988
Score = 440 bits (238), Expect = 2e-122
Identities = 492/611 (81%), Gaps = 32/611 (5%)
Strand=Plus/Plus
Query 538 GAGT-TCCGAGGAAGAC--CG-TCTAGAGAACCTCACTACAATCTCAAGACATCAACCGA 593
|||| |||| ||||||| || || | || ||| |||||||||||||||||||||||||
Sbjct 624 GAGTCTCCG-GGAAGACGACGAGCTGGTGAGCCTAACTACAATCTCAAGACATCAACCGA 682
Query 594 ACTTCTTAAAGTACTGAACCGTATTTGGAGCCTTGAGGAGCAGCATGTC-TCCAATATCT 652
||||||||||||||||||||| || |||||||| || ||||||||| || || |||||||
Sbjct 683 ACTTCTTAAAGTACTGAACCGAATCTGGAGCCTCGAAGAGCAGCAT-TCCTCTAATATCT 741
Query 653 CCTTGATAAAAGCTTTGAAAACCGAGGTGGCTCATTCACGCGTTCGAATCAAGGAGCTTC 712
|||| |||||| |||| ||||||||| | ||||||||||| | || ||||| |||||||
Sbjct 742 CCTTAATAAAATCTTTAAAAACCGAGCTTGCTCATTCACGTGCCCGGATCAAAGAGCTTC 801
Query 713 TTAGGTACCAGCAAGCCGATAGACACGAGCTAGAC-AGTGTGGTGAAGCAACTCGCTGAA 771
| || | |||||| |||||||||| ||| | || | | | |||||||||||||| | |
Sbjct 802 TCAGATGCCAGCAGGCCGATAGACGCGATATGGATGATT-TAGTGAAGCAACTCGCGGGA 860
Query 772 GAAAAGTTGTTGAGCAAGA-AT-AAGGAAGTTGAGCGGATGAGCTCTGCTGTTCAGTCCG 829
|||||| ||| | |||| | |||||| ||| ||| | |||| ||| ||||| || |
Sbjct 861 GAAAAGCTGTCAA--AAGATACGAAGGAACATGATCGGTTAAGCTATGCGGTTCAATC-G 917
Query 830 TGAGGAAAGCGTTAGAAGATGAGCGGAAACTTAGAAAACGTTCTGAGAGTTTGCATAGGA 889
| | |||||||||||||||||| || |||||||||||||||||| ||||||
Sbjct 918 ---------C-T-AGAAGATGAGCGGAAACTGAGGAAACGTTCTGAGAGTTTGTATAGGA 966
Query 890 AAATGGCA-AGAGAGCTCTCGGAAGTGAAGTCTTCGTTGTCTAACTGTGTCAAGGAGCTT 948
|| ||||| | ||||||||||||||||||||| | |||| |||||| || |||||| |
Sbjct 967 AATTGGCACA-AGAGCTCTCGGAAGTGAAGTCAACTTTGTGTAACTGCGTTAAGGAGATG 1025
Query 949 GAGAGAGGGTCTAAATCAAATAAGATGATGGAGCTACTCTGCGATGAGTTTGCCAAAGGG 1008
||||||||| |||| ||||| ||||| ||||| | | || ||||||||||| ||||||
Sbjct 1026 GAGAGAGGGACTAAGTCAAAGAAGATTCTGGAGAGATTATGTGATGAGTTTGCAAAAGGG 1085
Query 1009 ATCAAGAGTTACGAAGAGG-AGATTCACGGTTTAAAGAAGAAGAATCTTGATAAGGATTG 1067
||||||||||||||| ||| ||||||| ||||||||| ||||| | | |||||| | ||
Sbjct 1086 ATCAAGAGTTACGAA-AGGGAGATTCATGGTTTAAAGCAGAAG--T-TGGATAAGAACTG 1141
Query 1068 GGCGGGTCGAGGTGGAGGAGATCAGTTGGTTCTTCATATTGCGGAATCTTGGCTTGACGA 1127
| ||| | |||| | ||||||| |||||||| |||||||||||| |||||||| ||
Sbjct 1142 GAAAGGTTGGGGTGAACAAGATCAGATGGTTCTTTGTATTGCGGAATCATGGCTTGATGA 1201
Query 1128 AAGGATGCAGA 1138
|||||| ||||
Sbjct 1202 AAGGATTCAGA 1212
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77627919310
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5