BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G41630.1
Length=1368
Score E
Sequences producing significant alignments: (Bits) Value
Ahg891500 jgi|Araly1|891500|Al_scaffold_0007_3486 1048 0.0
Ahg891473 jgi|Araly1|891473|Al_scaffold_0007_3459 451 5e-126
> Ahg891500 jgi|Araly1|891500|Al_scaffold_0007_3486
Length=1227
Score = 1048 bits (567), Expect = 0.0
Identities = 781/883 (88%), Gaps = 19/883 (2%)
Strand=Plus/Plus
Query 3 GTCGAAAATGAAGGATTTTGGTGGTGGTAGAGATATAATCAGTGATTTACCAGATGCACT 62
|||||||| ||||||||| |||||||||||||||||||||||||| |||||||| | |||
Sbjct 6 GTCGAAAAAGAAGGATTTCGGTGGTGGTAGAGATATAATCAGTGAATTACCAGACGAACT 65
Query 63 GATAGGTCACATTTTATCATTCCTTCCAACTATAGAAGCTG-TTGCCACTACTGTTCTTG 121
|||| ||||||| ||||||||||||||||||| |||||||| || | |||| |||||| |
Sbjct 66 GATATGTCACATCTTATCATTCCTTCCAACTAAAGAAGCTGCTT-CAACTAGTGTTCTCG 124
Query 122 CCAAAAGATGGAAGCCTTTGCTTTC-GTTTGTGCACAGTCTTGACTTTGATGACTCTTTG 180
||||||||||||||||||||| ||| || ||| | |||||||||||||| | ||||||||
Sbjct 125 CCAAAAGATGGAAGCCTTTGC-TTCGGTATGTACCCAGTCTTGACTTTGGTAACTCTTTG 183
Query 181 TGTTTACATCCCGCAAAGACTAACGAAGAGAAGAGAACAAATGCTACAAGTTTTATGCGG 240
||||| | ||| ||||||||| ||||||| |||||||| ||||||| |||||||||||||
Sbjct 184 TGTTTCCCTCCTGCAAAGACTTACGAAGAAAAGAGAACGAATGCTAGAAGTTTTATGCGG 243
Query 241 TTCGTGGATGGGGTGTTGGCTTTGCAAGGGAATGCTCGAATAAACAAATTCCGCCTAAAT 300
|||||||||||||||||||||||||||||||||||||| || |||| ||||| | | ||
Sbjct 244 TTCGTGGATGGGGTGTTGGCTTTGCAAGGGAATGCTCGGATTAACAGATTCCACTTTAAG 303
Query 301 GGTAAACATATTATCAATGAAA-GATGGGTGCTGGATTGGATACAAAATGTGTTGAAACG 359
||| || |||||||| |||||| | ||||||||||||||||||||||||||| |||||||
Sbjct 304 GGTGAAGATATTATCGATGAAATG-TGGGTGCTGGATTGGATACAAAATGTGGTGAAACG 362
Query 360 TGATGTATCAGATATTCGTCTATACGTCTCTTCCTGTTCGGATGGTTTTGACTCGAGTTT 419
| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 363 TCATGTATCAGATATTCGTCTATACGTCTCTTCCTTTTGGGATGGTTTTGACTCGAGTTT 422
Query 420 TTATCATTTGCCTCCAGAGATTTTTGTGAGTCAAACACTAGTTACGCTAATAATAA-TGT 478
||||| | |||||| ||||||||||||||| |||||||| |||||||||||||||| | |
Sbjct 423 TTATCCTCTGCCTCGAGAGATTTTTGTGAGCCAAACACTGGTTACGCTAATAATAAAT-T 481
Query 479 TTGAAGGTGACATCAACATTAGTGTGGGAAG-AGAAGTTTCTCTTCCGAAGCTCAAGACT 537
||||||||| | ||||||||||||||| ||| || ||||||||||||||||||||||||
Sbjct 482 TTGAAGGTGGCGTCAACATTAGTGTGG-AAGGAGCTGTTTCTCTTCCGAAGCTCAAGACT 540
Query 538 CTCCATCTGT-ACCATTTCAAGATA-AAATTGAGTACGTTTAACAAGCTTATTTCTGGTT 595
|||||||| | | ||||||||||| |||| ||||||||||||||||||| |||||||||
Sbjct 541 CTCCATCT-TCATTATTTCAAGATAGAAAT-GAGTACGTTTAACAAGCTTCTTTCTGGTT 598
Query 596 GTCACGCACTCGAAGAATTGATGATGATTAATT-GGAAATGGGATGAGTCTTCGGAACCT 654
||||||||||||||||||| ||| || |||||| || |||||| ||||||||||||||
Sbjct 599 GTCACGCACTCGAAGAATTAATGCTGCTTAATTTGGTG-TGGGATAAGTCTTCGGAACCT 657
Query 655 GAACCTTGCTTTGTGAC--CA-TATATCTCCCAAACCTCAAGATACTAGAGTATTGTCGT 711
||||||||||||| ||| | | | | |||||| |||||||| ||||||||||||||||
Sbjct 658 GAACCTTGCTTTGCGACGTCCCTGTCTATCCCAACCCTCAAGAGACTAGAGTATTGTCGT 717
Query 712 TTTGAAAGATATGATGAGGCTAACGATAAAGTCTCATTATTATTTCATAATCCAAAGGTG 771
| ||||||| ||||||||||||| ||||| || ||||| | |||| ||| |||||| |||
Sbjct 718 TATGAAAGAGATGATGAGGCTAAAGATAAGGTTTCATTGTCATTTGATAGTCCAAATGTG 777
Query 772 GTCTACCTAGAATTTTTTGATTCAATTGCGGATAGGTATCAACAAGTGAGTTTCGGTTCA 831
||||||||||||| |||||||| |||||||||||||||||||||||||||| | |||
Sbjct 778 GTCTACCTAGAATATTTTGATTGTGTTGCGGATAGGTATCAACAAGTGAGTTTTGATTCG 837
Query 832 CTTGTTGAAGCTAGACTCGGAATTCGACTGACATATGATCAGG 874
||||||||||||||||| || ||||| |||||||||||||||
Sbjct 838 CTTGTTGAAGCTAGACTAGGCCTTCGAATGACATATGATCAGG 880
Score = 204 bits (110), Expect = 2e-51
Identities = 133/144 (92%), Gaps = 1/144 (1%)
Strand=Plus/Plus
Query 1135 GGAATGCATCACATATATTCAGATAGATGCGAGGACGAAGACGGGTGCTTATGTAGATAT 1194
||||| ||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||
Sbjct 880 GGAATCCATCACATATATTCATATAGATGTGAGGACGAAGACGGGTGCTTATGCAGATAT 939
Query 1195 CCTACTAATTTTGTGGGGGG-AGTGGTTGCTCGTCCTTGCCTATCATCAAGTCCGGTCAA 1253
|||||| |||||| |||||| ||| || |||||| |||||||||||||||||||||||||
Sbjct 940 CCTACTGATTTTGGGGGGGGGAGTAGTCGCTCGTGCTTGCCTATCATCAAGTCCGGTCAA 999
Query 1254 GGTTCTAAAGATTTTGAACTTTGG 1277
|||||||||||| |||||||||||
Sbjct 1000 GGTTCTAAAGATATTGAACTTTGG 1023
> Ahg891473 jgi|Araly1|891473|Al_scaffold_0007_3459
Length=1197
Score = 451 bits (244), Expect = 5e-126
Identities = 434/521 (83%), Gaps = 32/521 (6%)
Strand=Plus/Plus
Query 4 TCGAAAATGAAGGATTTTGGTGGTGGTAGAGATATAATCAGTGATTTACCAGATGCACTG 63
||||||| |||||| ||||||||| |||||||||||||||| ||||||||||| ||| ||
Sbjct 7 TCGAAAAAGAAGGACTTTGGTGGTTGTAGAGATATAATCAGCGATTTACCAGACGCAGTG 66
Query 64 ATAGGTCACATTTTATCATTCCTTCCAACTATAGAAGCTG-TTGCCACTACTGTTCTTGC 122
|| ||||||| ||||||||||||||||||| |||||||| || | ||||| ||||||||
Sbjct 67 ATTTGTCACATATTATCATTCCTTCCAACTAAAGAAGCTGCTT-CAACTACCGTTCTTGC 125
Query 123 CAAAAGATGGAAGCCTTTGCTTTC-GTTTGTGCACAGTCTTGACTTTGATGACTCTTTGT 181
|||||||||||||||||||| ||| || ||| | ||||||||| ||||||||||||||||
Sbjct 126 CAAAAGATGGAAGCCTTTGC-TTCGGTGTGTACCCAGTCTTGAGTTTGATGACTCTTTGT 184
Query 182 GTTTACATCC-CGCAAAGACTAACGAAGAGAA-GAGAACAAATGCTACAAGTTTTATGCG 239
|||| ||||| | ||| |||| ||||||| || ||| || ||||||| ||||||||||||
Sbjct 185 GTTTCCATCCTC-CAATGACTTACGAAGA-AAGGAGCACGAATGCTAGAAGTTTTATGCG 242
Query 240 GTTCGTGGATGGGGTGTTGGCTTTGCAAGGGAATGCTC-GAATAAACAAATTCCGCCTAA 298
|||||||||||||||| | ||||||||||||||||| || | |||| ||||| | | |
Sbjct 243 GTTCGTGGATGGGGTG--G-CTTTGCAAGGGAATGCTAAGA-TCAACAGATTCCACTTTA 298
Query 299 ATGGTAAACATATTATCAATGAAA-GATGGGTGCTGGAT-TGGATACAAAATGTGTTGAA 356
| ||| || |||| ||| || ||| | |||||||| || || |||| ||||||||||||
Sbjct 299 AGGGTGAAGATATCATCGATCAAATG-TGGGTGCTTGAAATG-ATACCAAATGTGTTGAA 356
Query 357 ACGTGATGTATCAGATATTCG-TCTATACGTCTCTTCC-TGTTCGGATGGTTTTGACTCG 414
||||| |||||||||| || | |||| || ||||||| | || |||| |||||||||||
Sbjct 357 ACGTGGTGTATCAGATCTT-GATCTAGACATCTCTTCGAT-TTGGGATAGTTTTGACTCG 414
Query 415 A-GTTTTTATCATTTGCCTCCAGAGATTTTTGTGAGTCAA-ACACTAGTTACGCTAATAA 472
| ||||| ||||| |||||||| |||| |||||||| | | ||| | |||| ||||| ||
Sbjct 415 ATGTTTT-ATCATCTGCCTCCAAAGATCTTTGTGAG-CGAGACATTGGTTAGGCTAA-AA 471
Query 473 T-AATGTTTG-A-AGGTGACATCAACATTAGTGTGGGAAGA 510
| || |||| | | | | | ||||||||||||||| ||||
Sbjct 472 TTAAAATTTGTACAAG-G-CGTCAACATTAGTGTGG-AAGA 509
Score = 241 bits (130), Expect = 1e-62
Identities = 174/195 (89%), Gaps = 4/195 (2%)
Strand=Plus/Plus
Query 1133 AAGGAATGCATCACATATATTCAGATAGATGCGAGGACGAAGACGGGTGCTTATGTAGAT 1192
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct 785 AAGGAATGCATCACATATATTCAGATAGATGTGAGGATGAAGACGGGTGCTTATGCAGAC 844
Query 1193 ATCCTACTAATTTTGTGGGGGGA-GTGGTTGCTCGTCCTTGCCTATCATCAAGTCCGGTC 1251
|||||||| |||| ||||||| |||||||||||| |||||||||| ||||||||||||
Sbjct 845 ATCCTACTGGGTTTG-GGGGGGAAGTGGTTGCTCGTACTTGCCTATCGTCAAGTCCGGTC 903
Query 1252 AAGGTTCTAAAGATTTTGAACTTTGGTGAAATTTGcgatg-tacatgaggacgatgagga 1310
|||||||| ||||| |||||||||||||||||||| |||| | |||||||||| ||| ||
Sbjct 904 AAGGTTCTGAAGATATTGAACTTTGGTGAAATTTGTGATGAT-CATGAGGACGTTGAAGA 962
Query 1311 cgacgacgacgatga 1325
||| || || |||||
Sbjct 963 CGATGATGAAGATGA 977
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51199077531
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5